mRNA_L-elsbetiae_contig7239.16101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7239.16101.1
Unique NamemRNA_L-elsbetiae_contig7239.16101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.980e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:  121 DKARQAAEDEAKE-ELCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSAN---CPTCRIAFKKITKTLTGDDI 333
            ++ ++AA D+AK+ ELC IC E LP + RG+I CGH FCF CIH W+  S +   CP+CR+ F KI KTL+  D+
Sbjct:   42 ERTKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDV 116
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.590e-16
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  121 DKARQAAEDEAKE-ELCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQT---SANCPTCRIAFKKITKTLTGDDI 333
            ++ R+AA D+AK+ ELC IC E LP + RG+I CGH FCF CIH W      SA CP+CR  F KI KTL+  DI
Sbjct:   42 ERTRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDI 116
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.260e-15
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  163 LCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSANCPTCRIAFKKITKTLTGDDIAE 339
            +C IC + LP + RGV+ CGHVFCF+CIH WT+ S+ CP CR+  K+ITKTL+  D A+
Sbjct:   79 MCAICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAK 137
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.740e-15
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  163 LCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSANCPTCRIAFKKITKTLTGDDIAE 339
            +C IC + LP + RGV+ CGHVFCF+CIH WT+ S+ CP CR+  K+ITKTL+  D A+
Sbjct:  175 MCAICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAK 233
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: A0A1R2BZC3_9CILI (RING-type domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZC3_9CILI)

HSP 1 Score: 62.4 bits (150), Expect = 2.770e-10
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:  160 ELCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSANCPTCRIAFKKITK 312
            +LC ICY  +   G  V  CGH+FCFSCIH W++T   CP C+  F KITK
Sbjct:   10 DLCAICYNQIELQGC-VDSCGHLFCFSCIHKWSETENTCPICKARFFKITK 59
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: A0A6P4BUW5_ARADU (uncharacterized protein LOC107471428 n=9 Tax=Arachis TaxID=3817 RepID=A0A6P4BUW5_ARADU)

HSP 1 Score: 56.6 bits (135), Expect = 5.450e-7
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  151 AKEELCPICYEILPAMGRGVIPCGHVFCFSCIHLW------TQTSANCPTCRIAFKKITKTLTGDDI 333
            + E  C IC+    A  RG++PCGH FCF CIH W      T+ +A CP C+ +F+ I K    D I
Sbjct:  290 SSELSCVICHADFSAT-RGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADRI 355
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: UPI0010A49F90 (E3 ubiquitin-protein ligase RNF126-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A49F90)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-6
Identity = 24/48 (50.00%), Postives = 27/48 (56.25%), Query Frame = 1 
Query:  163 LCPICYEILPAMG-RGVIPCGHVFCFSCIHLWTQTSAN--CPTCRIAF 297
            +CPIC E     G  G +PCGH FCF CIH+W     N  CP CR  F
Sbjct:   13 ICPICKEEFKLGGDAGKLPCGHFFCFECIHVWLNFDQNDTCPVCRRPF 60
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: UPI00201F67D8 (peroxisome biogenesis factor 10-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201F67D8)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 1 
Query:  157 EELCPICYEILPAMGRG---VIPCGHVFCFSCIHLWTQTSANCPTCRIAF 297
            +  CP+C E     GR    V PCGH+FC+ CIH W QT A CP CR  F
Sbjct:  243 DRKCPLCLE-----GRQFSTVTPCGHLFCWKCIHEWCQTKAECPLCRDQF 287
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: UPI0009E26718 (uncharacterized protein LOC110019553 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E26718)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-6
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:  145 DEAKEELCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSAN------CPTCRIAFKKITK 312
            D+  E  C IC+    ++ RGV+PCGH FC+SCI +W    A+      CP C+  F  ITK
Sbjct:  297 DQQTEPSCVICWTEFCSL-RGVLPCGHRFCYSCIQVWADCMASKGKVSACPLCKANFTSITK 357
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BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Match: A0A835YZ14_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ14_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.580e-6
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:  136 AAEDEAKEELCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSANCPTCRIAFKKI 306
            A +  A  E C IC+E LP   +GV+ CGH +CF CI  W++T   CP C+  +  I
Sbjct:   61 AGDPGAAAEACSICFE-LPTK-KGVLKCGHFYCFDCIMEWSKTETTCPLCKARYTSI 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7239.16101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L829_9PHAE4.980e-1650.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGW0_ECTSI9.590e-1654.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE5.260e-1555.93RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI7.740e-1555.93Similar to PHD finger family protein, partial n=1 ... [more]
A0A1R2BZC3_9CILI2.770e-1052.94RING-type domain-containing protein n=2 Tax=Stento... [more]
A0A6P4BUW5_ARADU5.450e-741.79uncharacterized protein LOC107471428 n=9 Tax=Arach... [more]
UPI0010A49F901.540e-650.00E3 ubiquitin-protein ligase RNF126-like n=1 Tax=Pr... [more]
UPI00201F67D81.640e-650.00peroxisome biogenesis factor 10-like n=2 Tax=Halio... [more]
UPI0009E267182.580e-641.94uncharacterized protein LOC110019553 n=1 Tax=Phala... [more]
A0A835YZ14_9STRA3.580e-642.11RING-type domain-containing protein n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7239contigL-elsbetiae_contig7239:2534..4456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D8LMP5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RING-type zinc-finger
EggNOG OGs2D0HG@1,2SE7A@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size339
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7239.16101.1prot_L-elsbetiae_contig7239.16101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7239 2546..4456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.4740262-UTR-L-elsbetiae_contig7239:2533..25451622816806.4740262-UTR-L-elsbetiae_contig7239:2533..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7239 2534..2545 +
1691683827.6337962-UTR-L-elsbetiae_contig7239:2533..25451691683827.6337962-UTR-L-elsbetiae_contig7239:2533..2545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7239 2534..2545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.4890027-CDS-L-elsbetiae_contig7239:2545..26361622816806.4890027-CDS-L-elsbetiae_contig7239:2545..2636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 2546..2636 +
1691683827.647287-CDS-L-elsbetiae_contig7239:2545..26361691683827.647287-CDS-L-elsbetiae_contig7239:2545..2636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 2546..2636 +
1622816806.501585-CDS-L-elsbetiae_contig7239:3735..38511622816806.501585-CDS-L-elsbetiae_contig7239:3735..3851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 3736..3851 +
1691683827.6576157-CDS-L-elsbetiae_contig7239:3735..38511691683827.6576157-CDS-L-elsbetiae_contig7239:3735..3851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 3736..3851 +
1622816806.511795-CDS-L-elsbetiae_contig7239:4336..44561622816806.511795-CDS-L-elsbetiae_contig7239:4336..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 4337..4456 +
1691683827.6696396-CDS-L-elsbetiae_contig7239:4336..44561691683827.6696396-CDS-L-elsbetiae_contig7239:4336..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7239 4337..4456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7239.16101.1

>prot_L-elsbetiae_contig7239.16101.1 ID=prot_L-elsbetiae_contig7239.16101.1|Name=mRNA_L-elsbetiae_contig7239.16101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MASAMVSPPVVAGPSGNGKGSGSAAPLPEGATSGMSDKARQAAEDEAKEE
LCPICYEILPAMGRGVIPCGHVFCFSCIHLWTQTSANCPTCRIAFKKITK
TLTGDDIAE
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mRNA from alignment at L-elsbetiae_contig7239:2534..4456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7239.16101.1 ID=mRNA_L-elsbetiae_contig7239.16101.1|Name=mRNA_L-elsbetiae_contig7239.16101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1923bp|location=Sequence derived from alignment at L-elsbetiae_contig7239:2534..4456+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGCCGATCGATGGCATCTGCCATGGTTTCACCTCCGGTGGTGGCTGG
TCCCAGTGGCAACGGCAAAGGCAGCGGCAGCGCTGCCCCTCTGCCCGAAG
GAGGTGCGTGTAAAATGTTTGTGGCACGAAGACGTTTGGTACACGCGCCC
TAAGTATACGAAAAAGAAAAACCTCAAGAGCAGAATGCTTCCGAGCCTTT
GCGCACATAATAGGACTTCCAGGCTGCTTCTCTTAAGCCTGTAAACCCGG
CTACCTACTGCTGTGATTCCTTTTGCTGCATCTTTGAAGCACCGGTGTGT
TTTCTCTGGACATGGCGCGAGGGGCCTCCGCGTGAAGGGGAGCGGTGCGC
TGTTTCGTGGGGGTGGGTTAGCACTTCGTGGGAGTATCGCGCACACGCTC
AGTCAGTACACACACCCGCGCCGTGGACAGTCAAAGTTCGGGAGACGATG
CATGCCGTGTTGCTCGGCTTGCGCATCCTCCCCGTTCTTGAATACGAAGC
AGCATGTATGCACGATTATAACGAGAAAATCGGCACCGGAAAGACGGGGG
AGGGGCTCGCGTCGGTTTCGGCTTCGCCATGTACGGCTTCGCTGCTGCTG
TCTGTTATCATGTGGCTGTCATCGTGTTGCTGTCACCCGCCGGTGATGGA
GCAAAAAATCCCGATTGTTTGGCGGTATTATGTTTGTTGGCGTGTCCGCC
ATGTGCATACGATGCAGCAGTGTATGGCACAGTGTTTGCTGGTGTGTCCG
CCATGTGCGATGCAGCAGTGTGTAGCATACACTGCCGTCCTCTTGGGAGG
CTGTGTGAGGCCGCAGTTTCAAAAGTACGAACCCACATTTTGTTGCACCG
AGTCCTGTACCCGCCGTAGCGTATTTTCCGAAACGTCGTTGCCGCGGACG
ACGACAACGGTGGAGGCTTTTCCAGGCTGCGGTAGATAAGCAGAGGCGGT
TTTTGGTATTTACCCCCCCTTGTTGTATGCTTGTGTCCTGGCTTGCCTCG
ACACTCACTCTCACTGTGTGTACAGCAGGATGGTGATTGCATGATGTATG
GTGTCGTGGAAAGCAATCGCAGCAACATCAAGACGAGGTGCCTTGGTTTT
CGACGAGATGCGTTTGAAGACTATTTATGTACCAACAACACCATCAACGA
CAATCAACCTTACGTACATCCCGTACAACTGCTGCCCCTCTTGCCGCGGC
AGCCACCAGTGGCATGAGCGACAAAGCCAGGCAGGCTGCCGAGGACGAGG
CCAAGGAGGAATTGTGCCCCATCTGCTACGAAATTCTCCCCGCCATGGGA
AGGGGCGTCATCCCGTGTGTGAGTTTCGGTGATATGTGTATGGCTGGAGC
AGCTAATCGGCTGGGGAGGATTTGTCAGTGTTGCGACTCGAGCGTATGAG
TCCTCTCCTGTGTAGACCAACTTTCCGCAGATGACGGCGAAATATCCTGT
TTTGTTTTGTATAGTCAATGTCAAAAGTGTACCTTGATTACCTAGCTGGT
GCCACTACCCTACCCTATGGTGGCGAAATAGGAAATCGCCCCTTACTGGT
TGGGTTTGAGGAAGGCCCTGGGCGAGCAAGGTTCGAAATTGCGTGTCTGC
GTATTTTTGCCTTGGTGTTGAAGCGGCCCGACTACATAACTGCCTTCAGG
ATCCAGGGTCTTTTCTTGCTTTCGTCCCCCCACCCAACGCGAGGCCGCTC
TCCATGCTCGAAGGGATAATCCATATCCAAGGCTATGTCCGTCTCACGTT
TCTCTTCTCCCTGCCCCTTCTCTCCGCTCCTACCAACGACGCTTTATTTT
CAGGGCCACGTGTTCTGCTTCTCATGCATTCACCTGTGGACCCAGACCAG
CGCCAACTGCCCGACCTGCCGCATCGCTTTCAAGAAGATCACCAAAACTC
TGACGGGGGACGACATCGCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7239:2534..4456+

>mRNA_L-elsbetiae_contig7239.16101.1 ID=mRNA_L-elsbetiae_contig7239.16101.1|Name=mRNA_L-elsbetiae_contig7239.16101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7239:2534..4456+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATCTGCCATGGTTTCACCTCCGGTGGTGGCTGGTCCCAGTGGCAA
CGGCAAAGGCAGCGGCAGCGCTGCCCCTCTGCCCGAAGGAGATGGCATCT
GCCATGGTTTCACCTCCGGTGGTGGCTGGTCCCAGTGGCAACGGCAAAGG
CAGCGGCAGCGCTGCCCCTCTGCCCGAAGGAGCCACCAGTGGCATGAGCG
ACAAAGCCAGGCAGGCTGCCGAGGACGAGGCCAAGGAGGAATTGTGCCCC
ATCTGCTACGAAATTCTCCCCGCCATGGGAAGGGGCGTCATCCCGTGTCC
ACCAGTGGCATGAGCGACAAAGCCAGGCAGGCTGCCGAGGACGAGGCCAA
GGAGGAATTGTGCCCCATCTGCTACGAAATTCTCCCCGCCATGGGAAGGG
GCGTCATCCCGTGTGGCCACGTGTTCTGCTTCTCATGCATTCACCTGTGG
ACCCAGACCAGCGCCAACTGCCCGACCTGCCGCATCGCTTTCAAGAAGAT
CACCAAAACTCTGACGGGGGACGACATCGCCGAGGGCCACGTGTTCTGCT
TCTCATGCATTCACCTGTGGACCCAGACCAGCGCCAACTGCCCGACCTGC
CGCATCGCTTTCAAGAAGATCACCAAAACTCTGACGGGGGACGACATCGC
CGAG
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