mRNA_L-elsbetiae_contig7236.16097.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7236.16097.1
Unique NamemRNA_L-elsbetiae_contig7236.16097.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7236.16097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7236contigL-elsbetiae_contig7236:3163..4178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size244
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7236.16097.1prot_L-elsbetiae_contig7236.16097.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7236 3163..4177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.075284-CDS-L-elsbetiae_contig7236:3162..32181622816806.075284-CDS-L-elsbetiae_contig7236:3162..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 3163..3218 +
1691683827.3156636-CDS-L-elsbetiae_contig7236:3162..32181691683827.3156636-CDS-L-elsbetiae_contig7236:3162..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 3163..3218 +
1622816806.086765-CDS-L-elsbetiae_contig7236:3574..36331622816806.086765-CDS-L-elsbetiae_contig7236:3574..3633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 3575..3633 +
1691683827.3429654-CDS-L-elsbetiae_contig7236:3574..36331691683827.3429654-CDS-L-elsbetiae_contig7236:3574..3633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 3575..3633 +
1622816806.0966597-CDS-L-elsbetiae_contig7236:4049..41771622816806.0966597-CDS-L-elsbetiae_contig7236:4049..4177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 4050..4177 +
1691683827.3797772-CDS-L-elsbetiae_contig7236:4049..41771691683827.3797772-CDS-L-elsbetiae_contig7236:4049..4177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7236 4050..4177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7236.16097.1

>prot_L-elsbetiae_contig7236.16097.1 ID=prot_L-elsbetiae_contig7236.16097.1|Name=mRNA_L-elsbetiae_contig7236.16097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
AVEALFDALEPFLPLFDILFKIGDIFQALTCPPFLGFLCFIEDLIAAIID
VIFSPLEAIFAPLIDPLVDLIGLPEIGFSIS
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mRNA from alignment at L-elsbetiae_contig7236:3163..4178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7236.16097.1 ID=mRNA_L-elsbetiae_contig7236.16097.1|Name=mRNA_L-elsbetiae_contig7236.16097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1016bp|location=Sequence derived from alignment at L-elsbetiae_contig7236:3163..4178+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTCCTGCCGCTCTTCGA
CATTCTGTGAGTTTAGTCCACAATTTCGGGCGTCTCTTGGGTGAAAAACG
TAACCAGCTGTGTTTATAGCTAAGAGGTCGCAAGTTTGGAGCGGACATGT
GGCAATTTTCCGAGAGAGTATTCCTCGAACCTCGCTCCAGTATTCGCCGA
ATGCATCTACTATAGGTAGTCTCTATTTATATACCGGTAGTCGCATAGAG
AGCAGACCGTCGTCTTATTTTGTCGAAGTGTTTCACATTCAACCCCAATA
TAAATACCACCAAATCTTTCGGAGCGTTGCACCAGAAGAAATTCAGTAAA
CTTCGACGCCAACCTCCATCTTCACCTTGTTCCCGCCAATACCCACCCTC
CTCCCGCCACAGGTTCAAGATAGGAGACATTTTCCAGGCTTTAACTTGCC
CGCCGTTCCTCGGGTTTCTCTGTGAGTGATTACCACCACGTTATTTGGCG
AACACTACTGAAGCCGAAGAGCTGACGACCCGCGTACTTGAGCTCCTCCC
GACGTGTAGTTTCGACCGAATATGTGCTTTGCCGAGTGATTAGCCAGCCA
GCCCAAGTTTTGCAGGCCTTGCCGTTCTCCTCTTGAGGAGAATGACACCA
GTGCAGGCACTCCCACTTGCACGCACCTCCTAGAACCGAAATTATACCGA
ACGAGGCACGGCCTTACCTGCGTGACAAAGGGGTGCCGTGTTCTACTCAC
TGCTGTTTGGGTTCGCTCGGTTGTGTTGCTTACCGTGGGCGGATGCTCCA
CCGTCGGGAGACTTTCCCCGAAATCACAAGGTGTTCAACACGCGTCGATG
CCGAACCCCCTGCGCGGCGTACCTCTCTCTGGCACAGGTTTCATCGAAGA
CCTCATCGCTGCGATAATCGACGTGATATTCTCTCCCCTCGAGGCCATCT
TCGCGCCTCTGATCGACCCGCTCGTTGACCTGATCGGTCTTCCCGAAATC
GGCTTCAGCATCTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7236:3163..4178+

>mRNA_L-elsbetiae_contig7236.16097.1 ID=mRNA_L-elsbetiae_contig7236.16097.1|Name=mRNA_L-elsbetiae_contig7236.16097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7236:3163..4178+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTCCTGCCGCTCTTCGA
CATTCTGCCGTCGAGGCTCTGTTTGATGCGCTCGAACCTTTCCTGCCGCT
CTTCGACATTCTGTTCAAGATAGGAGACATTTTCCAGGCTTTAACTTGCC
CGCCGTTCCTCGGGTTTCTCTGTTCAAGATAGGAGACATTTTCCAGGCTT
TAACTTGCCCGCCGTTCCTCGGGTTTCTCTGTTTCATCGAAGACCTCATC
GCTGCGATAATCGACGTGATATTCTCTCCCCTCGAGGCCATCTTCGCGCC
TCTGATCGACCCGCTCGTTGACCTGATCGGTCTTCCCGAAATCGGCTTCA
GCATCTCGGTTTCATCGAAGACCTCATCGCTGCGATAATCGACGTGATAT
TCTCTCCCCTCGAGGCCATCTTCGCGCCTCTGATCGACCCGCTCGTTGAC
CTGATCGGTCTTCCCGAAATCGGCTTCAGCATCTCG
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