mRNA_L-elsbetiae_contig7230.16090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7230.16090.1
Unique NamemRNA_L-elsbetiae_contig7230.16090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.450e-133
Identity = 211/275 (76.73%), Postives = 223/275 (81.09%), Query Frame = 1
Query:    1 SSARTLATLLALFSCVSLSRAF--VSGRAAATTTTTATNGCRHTAVRGRPLCRVSSRPPAPVAGLPPRAPPELRSTGGDS-EGGDGDDGIFGGLKRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816
            S AR LA LL L S V LSRAF  +SGR  AT+T   +   +H A  G     V  R  +P+ GLPPR P  LRS  GD  +G     GIFGG++ WW  DGKSDLKIYGTSLA+ALVVRSVA+EPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKF EFS RG  DALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWP WR GTIET
Sbjct:   14 SGARALAGLLVLSSLVQLSRAFGGISGRTTATSTARTSGWRQHHAHGGG----VRHRSLSPIVGLPPRVPHGLRSEAGDGGQGXXXXXGIFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 284          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 2.050e-124
Identity = 181/211 (85.78%), Postives = 188/211 (89.10%), Query Frame = 1
Query:  187 LPPRAPPELRSTGGDS-EGGDGDDGIFGGLKRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816
            +PPR P  LRS  GD  +G     GIFGG++ WW  DGKSDLKIYGTSLA+ALVVRSVA+EPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKF EFS RG  DALIKRVIAVGGD VQIKDGSLFVNGQEQFEDYTFEEPEY WGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWP WR GTIET
Sbjct:    1 MPPRVPHGLRSEAGDGGQGXXXXXGIFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 211          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 258 bits (658), Expect = 9.330e-79
Identity = 127/185 (68.65%), Postives = 152/185 (82.16%), Query Frame = 1
Query:  268 GLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGS-LFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816
            GL  W  ++ GK DL+IYGTSLA+ALV+R+  +EPR+IPSLSM+PTF+IGDQLAVDKLS K++RPYQR+DVVVF PP  FS FS R   +ALIKRV+AV GD V+IKDG  LF+NG++Q E YT E+  Y+WGPQTVP+G V+VLGDNRNHSLD H+WGFLPTEN+IGRAVFKYWP WR G I  
Sbjct:   88 GLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLS-KVARPYQRRDVVVFTPPDAFSIFSDR-RGEALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGIAV 270          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 243 bits (619), Expect = 5.010e-73
Identity = 126/216 (58.33%), Postives = 156/216 (72.22%), Query Frame = 1
Query:  187 LPPRAPPELRSTGGDSEG---GDGDDGIFGGLKRWWIT-DGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTN-DALIKRVIAVGGDAVQIKDG-SLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET 816
            LPP         G   EG   G+ DD +    +RWW   D ++++K Y  SL +AL+ R+  +EPRFIPSLSMFPTF++GDQLAVDK+S K+ RPY+R DVVVF PP  F +    GT  +ALIKRV+AV GD V++KDG +L+VNG  Q E +T E+  Y WGP+ VP GM+MVLGDNRNHSLDSH+WGFLP ENVIGRAVFKYWP+WR+G IET
Sbjct:   47 LPPIGRRGNAPEGSSDEGAKDGNVDDSLQAKAQRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKIS-KVVRPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIET 261          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 230 bits (587), Expect = 6.470e-70
Identity = 105/151 (69.54%), Postives = 126/151 (83.44%), Query Frame = 1
Query:  361 IEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813
            +EPR+IPSLSMFPTFE+GDQLAV+K++ +  RPY R DVVVFYPP  FS FS+RGT++ALIKR++AV GD VQI+ G +++NGQ Q E +  ++PEY+WGP  VP G VMVLGDNRNHSLDSHIWGFLP ENVIGRAVFKYWP WR G +E
Sbjct:    1 MEPRYIPSLSMFPTFEVGDQLAVEKVT-RYYRPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA)

HSP 1 Score: 232 bits (591), Expect = 2.620e-68
Identity = 112/194 (57.73%), Postives = 145/194 (74.74%), Query Frame = 1
Query:  247 GDDGIFGGLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF-------SSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVG 804
            G+DGI  G++RW  +D GK D+K Y TSLA+AL++R   IEPRFIPSLSM+PTF++GDQLAV+K++ ++ +P  R++VVVF PP  F E          +   +ALIKR++A+ GD V++K G L++NG  Q E YT E+ EY++GP  VPEG V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWP WR+G
Sbjct:  111 GEDGILSGIQRWLKSDEGKEDIKTYFTSLALALLLRFTIIEPRFIPSLSMYPTFDVGDQLAVEKVTKRI-KPLYRREVVVFNPPATFREVIVNDYGQDPKRAKEALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS)

HSP 1 Score: 227 bits (579), Expect = 2.990e-68
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  277 RWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF---SSRGTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGT 807
             W+ +D GK D+K Y  SL +AL++R + IEPR+IPSLSMFPTFE+GDQLAV+K++ ++ RP+ R +VVVF+PP KF E    +SR   +ALIKR++A  GD V++  G LFVNG EQ E +T E+ EY +GP  VP G V+VLGDNRNHSLD HIWGFLPTENVIGRAVF YWP WR G+
Sbjct:    1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRI-RPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGS 180          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A7J7IBZ0_9RHOD (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBZ0_9RHOD)

HSP 1 Score: 226 bits (576), Expect = 6.260e-67
Identity = 110/200 (55.00%), Postives = 138/200 (69.00%), Query Frame = 1
Query:  274 KRWW----ITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSR----------------GTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813
            +RWW      +  SD++++  S A A+++R   IEPR+IPSLSMFPTFEIGDQL VDK + KL R  +R DVVVFYPPP   E S                  G  DA+IKRV+AV GD V ++DG L+VNG+ Q E Y  E+P+Y+WGP  VPEG ++VLGDNR++SLDSHIWGFLP  NVIGRAVF+YWP+ R+G IE
Sbjct:   46 RRWWHRLLYDEQFSDVRVFTASFAAAVLLRVFVIEPRYIPSLSMFPTFEIGDQLFVDKATQKLGRHIERGDVVVFYPPPALIEASKMTAQALNAAGEKDVHQYGAKDAMIKRVVAVAGDTVAVRDGRLYVNGEAQIEPYVTEQPDYRWGPVQVPEGCLVVLGDNRSNSLDSHIWGFLPERNVIGRAVFRYWPITRMGLIE 245          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: M1UNG9_CYAM1 (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UNG9_CYAM1)

HSP 1 Score: 228 bits (581), Expect = 1.810e-66
Identity = 107/196 (54.59%), Postives = 139/196 (70.92%), Query Frame = 1
Query:  274 KRWWITDGKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSR----------------GTNDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIE 813
            +R W  D  +D++++  S   A+ +R+  +EPR+IPSLSM+PTF++GDQL VDK++ KL R  QR DVVVFYPPP   E S                  G  DA+IKRV+A+GGD V+I+DG L+VNG+ Q E Y  E P+Y+WGP  VP+G ++VLGDNR++SLDSH+WGFLP  NVIGRAVF+YWPL RVGTIE
Sbjct:  140 QRLWRDDKFADVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGRHIQRGDVVVFYPPPALIEASKETAKALNAAGETGAHQYGARDAMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTRVGTIE 335          
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.200e-66
Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 1
Query:  259 IFGGLKRWWITD-GKSDLKIYGTSLAIALVVRSVAIEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEF---SSRGTNDALIKRVIAVGGDAVQIK-DGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVG 804
             F  ++ W+ +D GK D+K Y  SL++AL++R + IEPR+IPSLSM+PTFE+GDQLAV+K++ ++ RP+ R +VVVF PP +F E    SSR + +ALIKR++AV GD V++K  G LFVNG +Q E +T E+ EY++GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWP WRVG
Sbjct:   96 FFEQIQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7230.16090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS42_ECTSI1.450e-13376.73Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6H5KUG3_9PHAE2.050e-12485.78Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6T5N089_HETAK9.330e-7968.65Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA5.010e-7358.33Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA6.470e-7069.54Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7R9WYP6_9STRA2.620e-6857.73Mitochondrial inner membrane protease subunit n=1 ... [more]
B8BZJ0_THAPS2.990e-6860.77Mitochondrial inner membrane protease subunit (Fra... [more]
A0A7J7IBZ0_9RHOD6.260e-6755.00Mitochondrial inner membrane protease subunit n=1 ... [more]
M1UNG9_CYAM11.810e-6654.59Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6V1AJW1_9STRA2.200e-6659.36Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7230contigL-elsbetiae_contig7230:1081..4753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue8.5e-75
Seed eggNOG ortholog2880.D8LS42
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Ec32 ortholog descriptionSignal peptidase I (SPase I) (Leader peptidase I)
Ec32 orthologEc-12_004880.1
Exons4
Model size1658
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7230.16090.1prot_L-elsbetiae_contig7230.16090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7230 2492..3914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.5599954-UTR-L-elsbetiae_contig7230:1080..13481622816805.5599954-UTR-L-elsbetiae_contig7230:1080..1348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 1081..1348 +
1691683826.9539788-UTR-L-elsbetiae_contig7230:1080..13481691683826.9539788-UTR-L-elsbetiae_contig7230:1080..1348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 1081..1348 +
1622816805.5767777-UTR-L-elsbetiae_contig7230:2369..24911622816805.5767777-UTR-L-elsbetiae_contig7230:2369..2491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 2370..2491 +
1691683826.9686167-UTR-L-elsbetiae_contig7230:2369..24911691683826.9686167-UTR-L-elsbetiae_contig7230:2369..2491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 2370..2491 +
1622816805.6212327-UTR-L-elsbetiae_contig7230:3914..47531622816805.6212327-UTR-L-elsbetiae_contig7230:3914..4753Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 3915..4753 +
1691683827.015335-UTR-L-elsbetiae_contig7230:3914..47531691683827.015335-UTR-L-elsbetiae_contig7230:3914..4753Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7230 3915..4753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.5878744-CDS-L-elsbetiae_contig7230:2491..26351622816805.5878744-CDS-L-elsbetiae_contig7230:2491..2635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 2492..2635 +
1691683826.9821572-CDS-L-elsbetiae_contig7230:2491..26351691683826.9821572-CDS-L-elsbetiae_contig7230:2491..2635Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 2492..2635 +
1622816805.5993538-CDS-L-elsbetiae_contig7230:3107..32121622816805.5993538-CDS-L-elsbetiae_contig7230:3107..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 3108..3212 +
1691683826.992788-CDS-L-elsbetiae_contig7230:3107..32121691683826.992788-CDS-L-elsbetiae_contig7230:3107..3212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 3108..3212 +
1622816805.6113338-CDS-L-elsbetiae_contig7230:3734..39141622816805.6113338-CDS-L-elsbetiae_contig7230:3734..3914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 3735..3914 +
1691683827.0041173-CDS-L-elsbetiae_contig7230:3734..39141691683827.0041173-CDS-L-elsbetiae_contig7230:3734..3914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7230 3735..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7230.16090.1

>prot_L-elsbetiae_contig7230.16090.1 ID=prot_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFSEFSSRGTNDAL
IKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYKWGPQTVPEGMVM
VLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPLWRVGTIET*
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mRNA from alignment at L-elsbetiae_contig7230:1081..4753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7230.16090.1 ID=mRNA_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3673bp|location=Sequence derived from alignment at L-elsbetiae_contig7230:1081..4753+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAGCGCTCGCACCTTGGCGACCTTACTGGCACTTTTTTCTTGCGTTTC GTTGTCACGAGCGTTCGTCTCGGGCAGAGCAGCAGCAACAACAACAACAA CCGCAACGAACGGTTGTCGACATACCGCCGTACGGGGACGACCGCTTTGT CGGGTCTCCTCTAGACCACCTGCACCCGTTGCCGGGTTGCCGCCACGAGC GCCACCCGAATTGCGATCGACTGGTGGTGATAGCGAAGGAGGTGACGGTG ATGATGGTATATTCGGAGGTGAGGAAAATTTGACATTTTACATATATATT CCGAAGACGCGGTGCAACCAAACAACATGTGTAAGGTATAGATAGATATA GCCAAGGTAGACTTTCGAGACTACATGTGCTGCTGTACTCCGATAATCTA CACCTACACAGATCAATCCACCGACGCTCCCTTGCTTGCATTATATCATT TCGTTTTCGTCGCTCCCTAGATTTTGCGGTTGCTCCATAATCCAGCTGAT AATCCAACGGTTCGCCAGACTCGCAGCCAAGCACTGAGCTCTTTCTATTT TGTAGTGAGAGACCTGTAGTCTAAGTCGTTCTAGCAGTCTAGAGCTGCGT TATGGACCTTCGTGCGAGGGGACGGTGAAGCACACGGGCAGCACCGTGAC ACTCCCCCTTCGCCGTTCGCACAATCCAACGAAACCCGCACGCACGCCAA CCACTGCTGCTGCGTATATTTACCAAAGAAAAATATTTTCCTCCAGCCGA TGTGGGCGGCGGAGTCTTCAGTGGTTCGCATTCAATGGATGGAACTGGAA CTTCGAATTTCAAAGCAGTAGACTAGACCAACGGTACCCTTCTGCCGTAT TGTCTAAGCTGCACGCACAGAGAGCGGGTTTTTCCGGCCTCGAGAATGCA GCACACGACCGCCCATGTTCGCTGTCCACCTGCCGTGGCTCTGAATAAGA GACGTCCACCCCTGAACGGTCCGGGGCCCGACGAACGGCATGCTCCCACG TAGCTCGGGTATGTATCTACTCTAGACTAGGACCAGACAAACGCGGCACT TAAAAAACAACACTTGACAACCCTGGGAAGTGAAAAGGGTAAAAAAATGT CTTGGACTGGAGATGGGGGTTTCATAGATGTCCTGTACAACAGGGATGAC CTCCACAACACGGCGCGATTTGATCAGTGTATCGATGCACGCCCCCACGC TCACGACCACAACAGTAGCAACGGCCGCCAGATCACGACGAAACGAGACC GCCAAACAACCGAACCAACCCCCCGCCAAAACAATTCAGGGCTTAAACGG TGGTGGATAACGGACGGCAAGTCGGACCTGAAGATCTACGGCACCTCCCT CGCGATTGCGCTGGTGGTGAGATCGGTGGCCATCGAGCCGCGTTTCATCC CGTCCCTGTCCATGTTCCCGACCTTCGAGATCGGAGACCAGCTGGCGGTG GACAAGCTATCGAGCAAGCTCTCTCGCCCCTACCAGAGAAAAGACGTGGT CGTGTTCTACCCGCCGCCCAAGTTCAGCGAGTTCTCCAGCAGGGGAACGA ATGACGTGAGATACAGAGATACACAGAGAGAGGGAGAGAGAGGGAGAGAG AGAGAGAGAACGAGGGAGTGTTTGTGCATGTTTGTAGTATGCATATGTGT GCTGATTGCACTCGTTGATCGAACGAATGCTGTAGTCCCACCGGGTAGGC CTAATAATACTAAAGGCGCGGAGCACGCGTGTGTGTCGTGTTTTCGCCGA CCAGGCTCGCGTAGGGGGGGCAGCGCATGAGGGAGGAGAGCTGGCTCTTC CGAGTACAACTGCTTGCGACAGTCCTCAGACGCAGCACTAACATATTTTG GCGTATGTTTTGGCGTAGACTACACATGTAGCATATGATATGATAAATAC CAAGATTCGTGCAAGTGTGTCGCGTTTTCAACTCCAAGGCGGAATGTTTC TCGTGCCCGCTTTCGTTGTGGGTGCTGCCGTGCCCCCGGCCTCTTGCCCA TCTCGACGACGGGCCTCATCCGCCCAGGCACTCATCAAGCGCGTCATCGC TGTGGGCGGGGACGCTGTGCAGATCAAGGACGGCTCGCTATTCGTCAACG GGCAGGAGCAGTTTGAGGACTACACTTTCGAGGTGCGGTGCGCGCATGTT TTTTTCTGGGTTTCATAGTTCCAGCTAGTGGCAAAAGTTGTTGATAACAT ACATATGATGTGTACATCGAAGCTTGGTTCTTTGTCATAGAGCGCGAGTC TGCAACGGAATGGAATTTTCGCTTCCCAGTCGCGATGCGGTGCGGTGCGG GGAGTCATCCCATATTGCTCCGGTCCAGGAGGCGGATACCATGTGCCAAG TTTTCAAGACGGTGGGAATGCCGATCTTTCCATTTCCGTTGTCCAAGGCG CGCGTCCACATAAACCGCCTTCGACGGCGCGGACAAAGCAAGCGTCGATT TTCCATCGTTTTCGGCATCTGCAAGTACATATTTCTATATAAATATGTAC CACATAACATTCGGAACGGCTTTTTGTGTTTCACAGGTTGGGCGTATGAA GACCGCTGACGTTTGGTAGAAAAGTCGAAGTATTTTCTTTGACGGCATTC ACGACGAACACAAACCGTATTTTCTTGTACTTTTTTGTGGTCTGTCGTCA CCAGGAGCCGGAGTACAAGTGGGGGCCGCAGACCGTCCCGGAGGGGATGG TGATGGTCCTGGGGGACAACAGGAACCACAGCTTGGACTCTCACATTTGG GGGTTTCTGCCGACAGAGAACGTCATCGGAAGAGCCGTTTTCAAGTACTG GCCACTGTGGCGAGTCGGCACTATTGAGACCTAACAGAGAGTAGTAGCCT GATGGTGGCTTTGAGATCGAAACCTCATATCGTATTAACCCGCTGCTGCG GAACCAAGCGGGCGGTGTCAATGCCCCCTCCACTATGTAGCTATGGTTCC GAGCTACCTTCAGCTACATCCGAGAAGCCACGAATCACGGAGAAAAGCGC GGTTGTTCGGCGAGGAGTGCAATGAATCGAACAAATTGCTAATCTGACAA GCACGTTTACGCGCTCATAAGAAGATTGCTGTCGTGATAGGTGTTTGGTT TGCTTGTAAACGCCTTTGGCCTGTTACGCGGGCGGCTTTTGGTTGATTGC TTAGTAATGCTGCGTGTTGCGCAAACACGCACATACGGGTGTACTCCCCC CATTGCCAACCAAGCCTTAAAAAAACGGGCATTGTTATAGAGCAGCAGCA AGCACGGTAGTTTTTTTGGGGCAACGACATTTAAATGAACGGCAGTGACG GCAGCACCTGTCGCGAGTGGGATGCATCGTCTTCGTACAGAACGGACCCT CTGTACCGACTACCGATTTTCTATCTGTTCAAGTCCCTCTTGGGTCATGC GTGTTGACCAATAGGAAAGCTGCGGGCACGTAATGCCTCTCGGGTCAGAA ACATGCCTCTTTGTAGACCCTAAAGAGAAGATGGCGAATTGTTGTGGAGG AAATTAGAGAGGAAGAGAGAGCGAGCGCGCAACGAGCATAATAGAAAGAC GGAGGTGTGTGGCTACAGCTTATGTTCGTGGCAAACAGTAGCGGTATGCA GCGGAGTGCGACGCTGCAGTCTTCGGCTGTAATTAGGCAGCATCGGTGAT AAAAAAAGAGAACACGTACTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7230:1081..4753+

>mRNA_L-elsbetiae_contig7230.16090.1 ID=mRNA_L-elsbetiae_contig7230.16090.1|Name=mRNA_L-elsbetiae_contig7230.16090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig7230:1081..4753+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCCGACCTTCGAGATCGGAGACCAGCTGGCGGTGGACAAGCTATC
GAGCAAGCTCTCTCGCCCCTACCAGAGAAAAGACGTGGTCGTGTTCTACC
CGCCGCCCAAGTTCAGCGAGTTCTCCAGCAGGGGAACGAATGACATGTTC
CCGACCTTCGAGATCGGAGACCAGCTGGCGGTGGACAAGCTATCGAGCAA
GCTCTCTCGCCCCTACCAGAGAAAAGACGTGGTCGTGTTCTACCCGCCGC
CCAAGTTCAGCGAGTTCTCCAGCAGGGGAACGAATGACGCACTCATCAAG
CGCGTCATCGCTGTGGGCGGGGACGCTGTGCAGATCAAGGACGGCTCGCT
ATTCGTCAACGGGCAGGAGCAGTTTGAGGACTACACTTTCGAGGCACTCA
TCAAGCGCGTCATCGCTGTGGGCGGGGACGCTGTGCAGATCAAGGACGGC
TCGCTATTCGTCAACGGGCAGGAGCAGTTTGAGGACTACACTTTCGAGGA
GCCGGAGTACAAGTGGGGGCCGCAGACCGTCCCGGAGGGGATGGTGATGG
TCCTGGGGGACAACAGGAACCACAGCTTGGACTCTCACATTTGGGGGTTT
CTGCCGACAGAGAACGTCATCGGAAGAGCCGTTTTCAAGTACTGGCCACT
GTGGCGAGTCGGCACTATTGAGACCTAAGAGCCGGAGTACAAGTGGGGGC
CGCAGACCGTCCCGGAGGGGATGGTGATGGTCCTGGGGGACAACAGGAAC
CACAGCTTGGACTCTCACATTTGGGGGTTTCTGCCGACAGAGAACGTCAT
CGGAAGAGCCGTTTTCAAGTACTGGCCACTGTGGCGAGTCGGCACTATTG
AGACCTAA
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