mRNA_L-elsbetiae_contig723.16088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig723.16088.1
Unique NamemRNA_L-elsbetiae_contig723.16088.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: D8LGK3_ECTSI (Vta1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK3_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.890e-30
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 MAMTVPPGLKPVTQYVRRAEKLDKAPEPEAPVVAYHCRLYATEQAMKLQDNTEAG 165
            MAM++PPGLKPVTQYVRRAE+LDKAPEPEAPVVAYHCR+YATEQAMKLQDN+EAG
Sbjct:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG 55          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S2R0K1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0K1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.400e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 MAMTVPPGLKPVTQYVRRAEKLDKAPEPEAPVVAYHCRLYATEQAMKLQDNT 156
            M + VPP LK +TQ+VRRAE+LD    PE+ VV+Y+ R YA +  + L  +T
Sbjct:    1 MPLKVPPELKKITQFVRRAEELDSESSPESRVVSYYSRQYAVQMGLPLAGST 52          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: W7TAT1_9STRA (Vacuolar protein sorting-associate Vta1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAT1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.050e-6
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   10 TVPPGLKPVTQYVRRAEKLDK-APEPEAPVVAYHCRLYATEQAMKLQ 147
            TVPP LK +T ++RRAE+LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.730e-6
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   10 TVPPGLKPVTQYVRRAEKLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            T+PP LKP+T Y+RRAE+LD+    PE+ +VAY CR YA E  + L
Sbjct:    3 TIPPVLKPITSYIRRAEELDRDTSRPESVLVAYFCRSYAMELGIPL 48          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: F0YCQ0_AURAN (Vta1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCQ0_AURAN)

HSP 1 Score: 51.2 bits (121), Expect = 4.630e-6
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 MAMTVPPGLKPVTQYVRRAEKLDKAPEPEAPVVAYHCRLYATEQAMKLQD 150
            ++ +VP  +K    +++RAE+LD+A +P A VVAYHCR YA E  + L+D
Sbjct:    3 LSSSVPADMKACKSFLQRAEELDRASDPNAKVVAYHCRQYAMELGIALRD 52          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S2LH26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH26_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.890e-6
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    7 MTVPPGLKPVTQYVRRAEKLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            + +PP LK +TQY+RRAE+LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A4D9D241_9STRA (Vta1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D241_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.740e-6
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   10 TVPPGLKPVTQYVRRAEKLDK-APEPEAPVVAYHCRLYATEQAMKLQ 147
            TVPP LK +T ++RRAE+LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S2LHP1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHP1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.720e-5
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    7 MTVPPGLKPVTQYVRRAEKLDK-APEPEAPVVAYHCRLYATEQAMKL 144
            + +PP LK +TQY+RRAE+LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S2RMG8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMG8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.320e-5
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   13 VPPGLKPVTQYVRRAEKLDKAPEPEAPVVAYHCRLYATEQAMKL 144
            +PP LK VT YVRRA+++++  +P A V+AY+CR +A E  +K+
Sbjct:    4 IPPDLKAVTPYVRRAKEVEQTGDPRAYVIAYYCRTHAMELGLKI 47          
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Match: A0A7S4AWR7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWR7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.210e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 MAMTVPPGLKPVTQYVRRAEKLDKAP-EPEAPVVAYHCRLYATEQAMKL 144
            M +T+PP LK +T YVRRAE+LD+    PE+ +VA++CR YA    + L
Sbjct:    1 MPLTIPPELKKITPYVRRAEELDRDQGNPESRLVAFYCRQYAVHSGIVL 49          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig723.16088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LGK3_ECTSI5.890e-3090.91Vta1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2R0K1_9STRA1.400e-648.08Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
W7TAT1_9STRA2.050e-651.06Vacuolar protein sorting-associate Vta1 n=1 Tax=Na... [more]
A0A7S4D8M6_HETAK2.730e-654.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YCQ0_AURAN4.630e-646.00Vta1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2LH26_9STRA7.890e-648.94Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A4D9D241_9STRA8.740e-651.06Vta1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2LHP1_9STRA1.720e-548.94Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2RMG8_9STRA2.320e-547.73Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4AWR7_9STRA3.210e-548.98Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig723contigL-elsbetiae_contig723:25050..25214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.5165448-CDS-L-elsbetiae_contig723:25049..252141622816805.5165448-CDS-L-elsbetiae_contig723:25049..25214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 25050..25214 -
1691683826.9419136-CDS-L-elsbetiae_contig723:25049..252141691683826.9419136-CDS-L-elsbetiae_contig723:25049..25214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 25050..25214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig723.16088.1prot_L-elsbetiae_contig723.16088.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig723 25050..25214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig723.16088.1

>prot_L-elsbetiae_contig723.16088.1 ID=prot_L-elsbetiae_contig723.16088.1|Name=mRNA_L-elsbetiae_contig723.16088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MAMTVPPGLKPVTQYVRRAEKLDKAPEPEAPVVAYHCRLYATEQAMKLQD
NTEAG
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mRNA from alignment at L-elsbetiae_contig723:25050..25214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig723.16088.1 ID=mRNA_L-elsbetiae_contig723.16088.1|Name=mRNA_L-elsbetiae_contig723.16088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig723:25050..25214- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAATGACCGTGCCTCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG CCGGGCGGAGAAGCTCGACAAGGCGCCGGAGCCGGAGGCGCCGGTTGTTG CCTACCACTGCAGGCTGTACGCAACGGAACAGGCCATGAAGCTCCAGGAC AATACCGAAGCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig723:25050..25214-

>mRNA_L-elsbetiae_contig723.16088.1 ID=mRNA_L-elsbetiae_contig723.16088.1|Name=mRNA_L-elsbetiae_contig723.16088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig723:25050..25214- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAATGACCGTGCCTCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG
CCGGGCGGAGAAGCTCGACAAGGCGCCGGAGCCGGAGGCGCCGGTTGTTG
CCTACCACTGCAGGCTGTACGCAACGGAACAGGCCATGAAGCTCCAGGAC
AATACCGAAGCAGGGATGGCAATGACCGTGCCTCCCGGGCTGAAGCCCGT
GACGCAGTACGTGCGCCGGGCGGAGAAGCTCGACAAGGCGCCGGAGCCGG
AGGCGCCGGTTGTTGCCTACCACTGCAGGCTGTACGCAACGGAACAGGCC
ATGAAGCTCCAGGACAATACCGAAGCAGGG
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