mRNA_L-elsbetiae_contig723.16089.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig723.16089.1
Unique NamemRNA_L-elsbetiae_contig723.16089.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig723.16089.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.160e-15
Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:    1 MPLYHQRL---SRPAPSRRRRXXXXXXXXX-----GSTCCNPWTILLVSPLVLMAFGLGTFFGIELAQTPGGRGTGLHAGASAPGGNYMPTLEHPTE----GAGAKWANNGNFAAP 312
            +PLYHQ     SR   +RRRR              GS C   W++L+V  LV +AFGLGTF GIELAQ PGG GT LH G  AP G++MP LEHP+     G GA   N     AP
Sbjct:    9 IPLYHQNKLGGSRAWSTRRRRSGAGGSSKSKRNVGGSLC---WSVLVVGTLVFVAFGLGTFTGIELAQAPGGSGTSLHNGNHAPRGSFMPNLEHPSGQEQVGGGAGGRNKREKPAP 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig723.16089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGK4_ECTSI1.160e-1547.41alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig723contigL-elsbetiae_contig723:25491..30338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue4.9e-14
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size433
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.1033223-CDS-L-elsbetiae_contig723:25490..257041622816805.1033223-CDS-L-elsbetiae_contig723:25490..25704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 25491..25704 +
1691683826.6163561-CDS-L-elsbetiae_contig723:25490..257041691683826.6163561-CDS-L-elsbetiae_contig723:25490..25704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 25491..25704 +
1622816805.1150815-CDS-L-elsbetiae_contig723:30120..303381622816805.1150815-CDS-L-elsbetiae_contig723:30120..30338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 30121..30338 +
1691683826.6300812-CDS-L-elsbetiae_contig723:30120..303381691683826.6300812-CDS-L-elsbetiae_contig723:30120..30338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 30121..30338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig723.16089.1prot_L-elsbetiae_contig723.16089.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig723 25491..30338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig723.16089.1

>prot_L-elsbetiae_contig723.16089.1 ID=prot_L-elsbetiae_contig723.16089.1|Name=mRNA_L-elsbetiae_contig723.16089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MPLYHQRLSRPAPSRRRRASTPKKRNGGSTCCNPWTILLVSPLVLMAFGL
GTFFGIELAQTPGGRGTGLHAGASAPGGNYMPTLEHPTEGAGAKWANNGN
FAAPPHRPPQHEPRAPRPTPQGFGAHDQAAQHQPEPATAGVGHG
back to top

mRNA from alignment at L-elsbetiae_contig723:25491..30338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig723.16089.1 ID=mRNA_L-elsbetiae_contig723.16089.1|Name=mRNA_L-elsbetiae_contig723.16089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4848bp|location=Sequence derived from alignment at L-elsbetiae_contig723:25491..30338+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTGTATCACCAGAGATTGAGCCGACCGGCACCCTCGAGGAGGAG
GAGAGCTAGCACGCCAAAAAAGAGGAATGGCGGCAGCACGTGTTGTAACC
CGTGGACCATCCTGCTCGTTTCTCCGCTCGTGCTGATGGCCTTCGGCCTC
GGCACGTTCTTTGGGATAGAGCTTGCCCAGACTCCCGGCGGAAGAGGAAC
GGGTTTACATGCAGGTGTGTCCAGTAGTCTGTGGCGAAAGCGGTGGGTAG
GTAAAGCATGTGGTGTGCCATATGATATGTAGCTCTCCCCTCGGGACATT
GATTGGGTACACACCGTTGACAGGATTGCGAACAATTCCGCTGTGGTCGT
CGACAGCAGTCGTGGGCTACGCAGGCACCCGAGGAACTCAAGCGCGTGTG
GGCGACGAGGGCGAAGTCTTCTTGCTTGGAGTCTGCGCGTGTGTGGTGTC
ACGAAACGATGGGTGGGGTGTGTTACGAGTACATATCTACATTTTATTTT
GGATAAAGAACAGAACCCTCTCCAGGAACAAATGGAGCGGGTAATCTGTA
CCAACGAATTTTTTTGACATAAATTCATTTCGAGCAGCTTCCGCAACCGC
CCATGCCCATCAATGCCACACCACAGACCACATTCAACGTTGCACCGCGG
GACCGCACTCGAGTTGTGCGTTTCGTGTGCCACGTGTTGATGTGTGTAAA
TGTATGTGTACATGCTGCTGCCAGCGCAAATCAAAGATGGCGAATAGACT
CCAAGATGCGGTCTATTTAAAAACGTCGAGGGGTTGGTGCTCGCGTTGTC
CCAAACGCTCTGAAGAAATGTGGGCACGCCTTCACCCCGAGCTTCGCCCT
GCCACCTATAGGTGGCTTCGTGATACATGCGATACCTTCGGATGAAGCTG
ATACCCTGTAGAGCACAGAATACTTTGAAACAGCAGCATCGGCGACAGGT
TTTGTGTTCAACGGCAGTTTTTTTGTTGCTTCCCTTGCCGCACCGCAGCA
CTCCAACACGCATACCTCGCTGAATACGTCACGCCTCCAAAATAAACCAC
CATCTACGTGTAGGCCTCAACTGTGCGGTTGTGCAGAACTGTCTTTCGAT
GGCTCGGATGCAACCCGCAGCTTTCATGGTCAACGTTTGAAGAAATTCTC
CCCGCTCACGTGTATACCTGCATGCGGGCACATTATCCTGAATTCTCCGC
ACCCGACCACCCGGGCAAATGGCTACTCTATTCACCTACTGGTACCTACT
ACAGACAATTTCGGAACAGACGCAGTTGTTTGCTCGACTTTGGTTGTGAT
GGCTTTGGTTAATTGTTCTTTTTGGCCGCACGTACGCGCCCTGCCATTCA
GACAGCACTTCAGACTTCGGACACAATCTCTGCGTGTACGTTTTTCGTCT
CTACTGCTATCTATGTACCGCGTCTCTTTGTAGGCAGCACTTCAGACAGC
CGTAGTAACTTTATTGCTACCTAGAGTCGGCAACTACGCGCACCGGTTAG
CAGTGGAACGAGAGGGGGGAGGTAGACTGCGTATATGTGGTAGTCGAATG
GAGACTACTACTGTGGACGTGTGGTTTAGTCACGTGGTTGGACATACAGC
AATTGGACACACATCAACGTTGCCGAAAATTCGGTGTACCTCTTTTCGTT
TTTTTGGTGTACCTTTCATCTTTCATTTCTCATTTCCTGCGTGTGTGTCT
TGTATATTTTGATGGTTCCTGCACTTTTGTGACCACGGGCCGTGAGTTGC
TAGATTTTTTGGTATAAGCAATCTCGGTAACACAAGCTAGCGTGAAGAAA
ACATCAACATGGCATGCAGGCCATATAAAGCCGGGTGAGGATGTACATAC
ATATTTATGTACCTCTACCTACATATGTCTACATATGTATCAAGTAGGGA
TGTCTATTGTATAACCGGTTATAACCGGTTCTTGTGTTCCGCGGTAGGTT
CTCCGGAAACTCCCGGGGGGGCCTCATCGGTGGGGAGGGGTATTTCCTTG
GTGCGTCCCCCCCTTTTCTCCCCCTTTTTTTGTCTAGAACTGAACACAAA
AATACCAGCACACAGCAGGCCGCCGCCCCACACAACCACACAACGCACAA
TAGCATGTCCCACCACGCACAGACCACCAGACCCTGTCATCTGCCTTTCG
GGGATCTCTGGGGCGCCGCACTTTCGGTTCGAGAGGGCGGTGATGCCCTT
CTTGACCTGGGGTGACTTCCTGTTGTCTCGTTGTTTCTCCTTTTTCCACG
TGCGTCTTGCGCGCGATGGGAGCCTTTCCATCCACATTAGCACTGATGAG
TGCATTTATTTTCGAAGAGAAGCCGTTGTTTCCATTTTCTTGTTTAGTTT
TATCATCCACTTGCATCCATCCACAGGAAAAACTGCATCACAAGAACCTC
GCATTGCAACTGCATTATGCCATTGTCACGTGGTGGGAAGCAGACGATAG
ACAGGCAGCAGCAGTGACGGCAAACACGCAGCAGTGCGTCGTCACTGTTT
ACAGCATACAGCATGTCTCGAGAGCTTCCGAACGAACAAAATAAAATATC
TAAAGTTACGTTGTATATCACCCGGGGATGGCACGTTTGAGTCCCCGTCA
GCGCGGTTGTAACCGGTACGTTCTCTCAAATGCTGATTTGGGGTTAATCC
GGTGCATTCTTAGTCCCGGCGTGGTTACAGACATCCCTGAGTATATAGCA
TATCCATCTGCCGGTTCGCAGACCAAGAGTCATTATCGTCTCTATTTCGC
AAACGCGAACGAACCTTAAAATATTATGGGGGTGTTTGGTGTGATGGTGG
ACAATCATTGTTGTTGTTGTTGCTGTCTTCACACCGCGACGATCTCTCCA
CCCAGTACCTCCCTATGTCCGTACTATTCCGACACTTGATACGGTCGATT
ACCATGGTCGCAGGCTAACTTACACCGTACAAAAGCTGTTGTAGACGAAA
ATAAAATGGACCCGAAGGGCCAGCACAGCGATACAAATCAAAGACAAAGA
GAGTGGAGCCCCCCGCCCCCCTCTACACGCTATGCGAGGTAAAAACGAAA
ATGGACAAGCCAACATTACCAACCGGGGGTGTACACCCCTTGGTTCTTTT
TTGGTACCCCGACAATGCCAGGGTGTTCCGTGCCGGGTTCTCGCTAGTTA
GGTCCACAAATTTAGTCCTCCCTATCGGTTATACCGCACACATGATATAA
AAAACAGGGCAAAAAAGACGTCGATCAAGACAAGACGCAAGCCGAAAGTA
CAAACAAACAGACACACAGACATCCATTAGCCCCAGAAAAGATAAGAAAC
AAACACGCCATCACTCCTCCGGTGGTGGTGCAAGTGGTACCGTGTAGTAT
TGATTCAGCCCGCAACGTGTCGCGCTACTGCGTCCGCCTCCGCCCTCTTG
CGTACGTCGCGTGCAGTTTCGATCGTCTCCGGCCTTGCAACGAGTAATTT
CGGGCCTTTCCCCGCCCCCGTTTCGATTTCGATATTCGATTTGCACGCTT
CGGCTGCCTGGACGCAACCGCCAATCGATTCGATATATCGATTTTCGATT
CAGAAAAAATGTTTAATAAGATCCACCTGACGCCGCTGCTCCCGAAAATC
GTAACGCCCATCAAGCTATTCAAAGAATCATCTTACCACTTTGACCCTTG
TTACCACACATTTTTTCTTGCGATATGTATTGGTAAGAAGGGTATGATTT
ACTTGCACTCCAGTGCTTCCTATACACGTATGTAAATCGATATCGCTCAA
AATAGAGGCAAGGAGGGGGGGAGGAGGGGGGGCTTTGCACCGAGCCCCTG
CCCTCCAGGCGACCCCTTGGGTTGATCGATTGACTACCGAAAGGTGTGCG
TGTGTGCGTTGAAGCGTGCGCGGCCGGAGACGCAAGATGATTCATGCTAC
ACAGGCCACGAGAGCTCAGACGCGAAAGTAATGAAAAAACGGCTCCTAAT
GTTGGTGTTCAATTCAAGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTTTTTTTTTGTGATTTTCGCCCACGTGGTGGGCCCACCGCGGTGTCGAC
ACTGTATTGTATTGTGTCTGCATTACAGCTCAGGTTTGGGCCAACCCAGG
TGTGGTGCCAATACTCGAAACTGCCCCTGCTGAAAACCGGCGTGCCTTTA
ACTCAGCAACAACAATCGCGGGCGGCAGCACACTAAACCGGCAGTAGGCA
AAGGGAGGGAGAGAACTGCGCCAGCCCCCAAGTTCCTGCGACACGTGGCC
CCCTCCTTTTCGTTACTGCTTCATAATATTCCGGTTTTGCCTACAGCAGT
ACGTAGTTCGTGTTCATACTGTTTGTATAACCACTCCCTTCCTCGGCCAC
CTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNN
NNNNNNNNTTGTCTACTCCATTCGCACGGGGTTTGTGTTTTTTTCTTTTT
TTCTCCCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCGACCCCTGCGCACGCCGCGCGTAAAAAAAAAACACGCACGTTCGTCCG
TTCGCACACCAAATAACCACACCGCCCCAGGCGCTAGCGCACCGGGGGGG
AACTACATGCCGACGCTCGAGCACCCCACGGAAGGCGCGGGCGCGAAATG
GGCGAACAACGGCAACTTCGCCGCCCCTCCACATCGACCACCCCAGCACG
AGCCGCGGGCGCCGCGGCCGACGCCGCAAGGTTTCGGTGCTCACGACCAG
GCAGCGCAGCATCAGCCAGAGCCGGCGACTGCGGGGGTAGGACACGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig723:25491..30338+

>mRNA_L-elsbetiae_contig723.16089.1 ID=mRNA_L-elsbetiae_contig723.16089.1|Name=mRNA_L-elsbetiae_contig723.16089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig723:25491..30338+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTGTATCACCAGAGATTGAGCCGACCGGCACCCTCGAGGAGGAG
GAGAGCTAGCACGCCAAAAAAGAGGAATGGCGGCAGCACGTGTTGTAACC
CGTGGACCATCCTGCTCGTTTCTCCGCTCGTGCTGATGGCCTTCGGCCTC
GGCACGTTCTTTGGGATAGAGCTTGCCCAGACTCCCGGCGGAAGAGGAAC
GGGTTTACATGCAGATGCCGTTGTATCACCAGAGATTGAGCCGACCGGCA
CCCTCGAGGAGGAGGAGAGCTAGCACGCCAAAAAAGAGGAATGGCGGCAG
CACGTGTTGTAACCCGTGGACCATCCTGCTCGTTTCTCCGCTCGTGCTGA
TGGCCTTCGGCCTCGGCACGTTCTTTGGGATAGAGCTTGCCCAGACTCCC
GGCGGAAGAGGAACGGGTTTACATGCAGGCGCTAGCGCACCGGGGGGGAA
CTACATGCCGACGCTCGAGCACCCCACGGAAGGCGCGGGCGCGAAATGGG
CGAACAACGGCAACTTCGCCGCCCCTCCACATCGACCACCCCAGCACGAG
CCGCGGGCGCCGCGGCCGACGCCGCAAGGTTTCGGTGCTCACGACCAGGC
AGCGCAGCATCAGCCAGAGCCGGCGACTGCGGGGGTAGGACACGGGGCGC
TAGCGCACCGGGGGGGAACTACATGCCGACGCTCGAGCACCCCACGGAAG
GCGCGGGCGCGAAATGGGCGAACAACGGCAACTTCGCCGCCCCTCCACAT
CGACCACCCCAGCACGAGCCGCGGGCGCCGCGGCCGACGCCGCAAGGTTT
CGGTGCTCACGACCAGGCAGCGCAGCATCAGCCAGAGCCGGCGACTGCGG
GGGTAGGACACGGG
back to top