mRNA_L-elsbetiae_contig7226.16082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7226.16082.1
Unique NamemRNA_L-elsbetiae_contig7226.16082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7226.16082.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.720e-6
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:    2 AEFCAQHAQEGMVDVRTKRCGHPTCTELPSYGLADTR 112
            AEFC+QH Q+ MV+V +KRCGHP CT+ PSYG A ++
Sbjct:   22 AEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7226.16082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE1.720e-662.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7226contigL-elsbetiae_contig7226:1830..4014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-05_005140.1
Exons2
Model size1790
Cds size1113
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7226.16082.1prot_L-elsbetiae_contig7226.16082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7226 1864..2976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.8562596-UTR-L-elsbetiae_contig7226:1829..18631622816804.8562596-UTR-L-elsbetiae_contig7226:1829..1863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 1830..1863 +
1691683826.4417863-UTR-L-elsbetiae_contig7226:1829..18631691683826.4417863-UTR-L-elsbetiae_contig7226:1829..1863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 1830..1863 +
1622816804.8779085-UTR-L-elsbetiae_contig7226:2976..30051622816804.8779085-UTR-L-elsbetiae_contig7226:2976..3005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 2977..3005 +
1691683826.4587216-UTR-L-elsbetiae_contig7226:2976..30051691683826.4587216-UTR-L-elsbetiae_contig7226:2976..3005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 2977..3005 +
1622816804.8879802-UTR-L-elsbetiae_contig7226:3400..40141622816804.8879802-UTR-L-elsbetiae_contig7226:3400..4014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 3401..4014 +
1691683826.466785-UTR-L-elsbetiae_contig7226:3400..40141691683826.466785-UTR-L-elsbetiae_contig7226:3400..4014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7226 3401..4014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.8676956-CDS-L-elsbetiae_contig7226:1863..29761622816804.8676956-CDS-L-elsbetiae_contig7226:1863..2976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7226 1864..2976 +
1691683826.4507966-CDS-L-elsbetiae_contig7226:1863..29761691683826.4507966-CDS-L-elsbetiae_contig7226:1863..2976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7226 1864..2976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7226.16082.1

>prot_L-elsbetiae_contig7226.16082.1 ID=prot_L-elsbetiae_contig7226.16082.1|Name=mRNA_L-elsbetiae_contig7226.16082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=371bp
MVDVRTKRCGHPTCTELPSYGLADTRKAEFCAQHALEGMVAKSAAWCIHR
GCSKRPSYGVEGTDIAEFCSPHAKQGMVDVRTKRCKHPSCKTRPSYGVEG
TRQTLFCAKHAQDGMVDTCSTRCRHPRCTTRPHYGIGGSKKPEFCGRHAR
DGMIDIVNKKCGHPACTITPSYGVDGTHKSEFCVQHAQHGMVDVISKRCA
HQGCRKSPSFGFEEGRIKEFCATHAKNGMTGYWIWSRPGSTSALATDDNA
GAGGGGKRRRRHSQEVRDTARRDGDLSRRLRSRATAFGEEETAVLAAGKS
TSASSKRARVYVNDDAARAACPDPVKEEVVDQTVMDDTEGPSSEPEERGS
GQQAHQESESAPEVVVEGSS*
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mRNA from alignment at L-elsbetiae_contig7226:1830..4014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7226.16082.1 ID=mRNA_L-elsbetiae_contig7226.16082.1|Name=mRNA_L-elsbetiae_contig7226.16082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2185bp|location=Sequence derived from alignment at L-elsbetiae_contig7226:1830..4014+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGAATTCTGCGCGCAGCATGCTCAGGAAGGGATGGTTGACGTCCGTA
CCAAGAGGTGCGGGCATCCAACTTGCACAGAACTACCGTCGTATGGCCTG
GCAGACACCAGGAAGGCGGAATTCTGCGCTCAGCATGCTCTGGAGGGAAT
GGTCGCCAAAAGTGCCGCTTGGTGCATCCATCGAGGGTGCAGCAAAAGGC
CATCCTACGGCGTTGAGGGAACCGATATCGCAGAGTTTTGCAGCCCCCAC
GCCAAGCAGGGGATGGTTGACGTCCGCACAAAGAGGTGCAAACATCCAAG
TTGCAAGACCAGACCATCGTACGGCGTGGAAGGAACCAGACAAACGCTGT
TCTGTGCGAAACACGCTCAGGATGGAATGGTTGACACCTGCAGCACGAGG
TGTCGGCACCCAAGGTGCACCACCCGGCCGCACTATGGCATTGGAGGTAG
TAAAAAGCCGGAGTTCTGTGGCCGCCATGCGCGCGACGGAATGATAGATA
TCGTCAACAAGAAGTGCGGGCATCCAGCCTGCACCATAACTCCGTCCTAC
GGCGTAGACGGTACTCATAAGAGCGAGTTCTGCGTCCAACATGCCCAGCA
CGGAATGGTCGACGTGATTAGCAAGAGGTGCGCACACCAGGGTTGTCGAA
AAAGTCCGTCATTCGGATTTGAAGAGGGCCGCATAAAGGAGTTCTGCGCC
ACGCACGCGAAGAATGGGATGACTGGCTACTGGATTTGGTCCCGGCCAGG
CAGCACCAGTGCACTCGCTACGGATGATAACGCCGGCGCCGGCGGCGGTG
GCAAGCGCCGGCGGCGCCATTCGCAGGAGGTACGCGACACGGCGCGCCGT
GATGGTGACTTGAGCCGAAGGCTGAGGAGCCGTGCTACTGCCTTCGGTGA
GGAGGAGACCGCTGTCTTGGCGGCGGGGAAGAGCACGAGCGCGAGCAGTA
AGCGAGCCCGCGTGTACGTCAACGACGATGCCGCTCGCGCCGCTTGTCCG
GACCCAGTCAAAGAAGAGGTGGTTGATCAAACGGTGATGGACGACACCGA
GGGCCCATCGTCGGAGCCGGAAGAACGAGGATCAGGGCAGCAAGCTCATC
AAGAAAGCGAGTCTGCGCCCGAGGTGGTCGTCGAGGGCTCCTCCTAACGC
AAAGAAAACTGCGCGAAAGACTTAAGGTGCGTGAGGGTGTTGCGTCGCAC
TGCTGTGTGTTGCTTCGCAGCTACTGCGCGTTCTAGCAAGCAGTTAGCGG
AGGAATTTTTGTCTCACCACTTGTTAAACACTCTTACTTCATGTGTGCAC
TTCGGCATGTTTTCGCCTGCGCGATCCTTTGTCTTTTCTATCACGTTGCA
GTGGTGGTCTGTCCTTTAGTTTTATGCGGAGGGTGGAGATGCCCTATCTA
TGTTCTGGTAAATGAACCGAGCAGGTGTTGACGAAAGGATCTCTCTTTTT
ACTGACGACCCAAAATAAATTGAACTCAGCTGTGCATCAGGTATAGCACG
ACACTTCAACACCAAAAGTTGCTTTCATGCGTCCCTTCTTCTGTCTGTGC
AACTGGCCTATCGAACCACAGGCAGAAGAAGGAAAGAGGTGACGGGAAAG
ACATATGGCCTCTACTGCTGGGAAGATGGCTCTGCTGTGGCGGTCGTTTT
TAAAGGTGTAGAGCTGAGGTTCTCTTTGCAGGTGGTCAACGTTTATATTT
TCGTCGCTTTTCTTGGCATTTGTAACAAACCGGGTTAAAATCGTTTCCGG
CTGCTCCACGTAGACGTTACATGCAAAACGTCGTATTTGTGTACCTACAG
CCTACAGTTTTGCACGTTTGGTGTTTTGTTTTTAGTACACGTTAAGATCA
ATCGTGTATGGTGATAAGTGGTCTCGTACTAGCGGCGTTCGTTCTATCTT
TTTTGCGGTTTGGGTTCTAGAGAAGAGATTAGTGTGAAAGGTGCTAAAAG
TGTGCCAGAGCATTCTACACTCAACTTGACGGTATTATTTAGGCGGGCAA
TGCGGAGATAGATGCGACGGAGGCAATCGAGCCGCTTAAGCCTTACCTCA
GCGTGGGTTCGGGTGCTTCAAGATGGGAGTAAACAGTAGTACTTTCGTAT
TCTCGAGAGTGCTCCACAACATTTATATATATGGGCCACCTCCAATTCTT
GTCAAGTGTGCGCGTCTTTGCTTGGGAGGGGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7226:1830..4014+

>mRNA_L-elsbetiae_contig7226.16082.1 ID=mRNA_L-elsbetiae_contig7226.16082.1|Name=mRNA_L-elsbetiae_contig7226.16082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2226bp|location=Sequence derived from alignment at L-elsbetiae_contig7226:1830..4014+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGACGTCCGTACCAAGAGGTGCGGGCATCCAACTTGCACAGAACT
ACCGTCGTATGGCCTGGCAGACACCAGGAAGGCGGAATTCTGCGCTCAGC
ATGCTCTGGAGGGAATGGTCGCCAAAAGTGCCGCTTGGTGCATCCATCGA
GGGTGCAGCAAAAGGCCATCCTACGGCGTTGAGGGAACCGATATCGCAGA
GTTTTGCAGCCCCCACGCCAAGCAGGGGATGGTTGACGTCCGCACAAAGA
GGTGCAAACATCCAAGTTGCAAGACCAGACCATCGTACGGCGTGGAAGGA
ACCAGACAAACGCTGTTCTGTGCGAAACACGCTCAGGATGGAATGGTTGA
CACCTGCAGCACGAGGTGTCGGCACCCAAGGTGCACCACCCGGCCGCACT
ATGGCATTGGAGGTAGTAAAAAGCCGGAGTTCTGTGGCCGCCATGCGCGC
GACGGAATGATAGATATCGTCAACAAGAAGTGCGGGCATCCAGCCTGCAC
CATAACTCCGTCCTACGGCGTAGACGGTACTCATAAGAGCGAGTTCTGCG
TCCAACATGCCCAGCACGGAATGGTCGACGTGATTAGCAAGAGGTGCGCA
CACCAGGGTTGTCGAAAAAGTCCGTCATTCGGATTTGAAGAGGGCCGCAT
AAAGGAGTTCTGCGCCACGCACGCGAAGAATGGGATGACTGGCTACTGGA
TTTGGTCCCGGCCAGGCAGCACCAGTGCACTCGCTACGGATGATAACGCC
GGCGCCGGCGGCGGTGGCAAGCGCCGGCGGCGCCATTCGCAGGAGGTACG
CGACACGGCGCGCCGTGATGGTGACTTGAGCCGAAGGCTGAGGAGCCGTG
CTACTGCCTTCGGTGAGGAGGAGACCGCTGTCTTGGCGGCGGGGAAGAGC
ACGAGCGCGAGCAGTAAGCGAGCCCGCGTGTACGTCAACGACGATGCCGC
TCGCGCCGCTTGTCCGGACCCAGTCAAAGAAGAGGTGGTTGATCAAACGG
TGATGGACGACACCGAGGGCCCATCGTCGGAGCCGGAAGAACGAGGATCA
GGGCAGCAAGCTCATCAAGAAAGCGAGTCTGCGCCCGAGGTGGTCGTCGA
GGGCTCCTCCTAAATGGTTGACGTCCGTACCAAGAGGTGCGGGCATCCAA
CTTGCACAGAACTACCGTCGTATGGCCTGGCAGACACCAGGAAGGCGGAA
TTCTGCGCTCAGCATGCTCTGGAGGGAATGGTCGCCAAAAGTGCCGCTTG
GTGCATCCATCGAGGGTGCAGCAAAAGGCCATCCTACGGCGTTGAGGGAA
CCGATATCGCAGAGTTTTGCAGCCCCCACGCCAAGCAGGGGATGGTTGAC
GTCCGCACAAAGAGGTGCAAACATCCAAGTTGCAAGACCAGACCATCGTA
CGGCGTGGAAGGAACCAGACAAACGCTGTTCTGTGCGAAACACGCTCAGG
ATGGAATGGTTGACACCTGCAGCACGAGGTGTCGGCACCCAAGGTGCACC
ACCCGGCCGCACTATGGCATTGGAGGTAGTAAAAAGCCGGAGTTCTGTGG
CCGCCATGCGCGCGACGGAATGATAGATATCGTCAACAAGAAGTGCGGGC
ATCCAGCCTGCACCATAACTCCGTCCTACGGCGTAGACGGTACTCATAAG
AGCGAGTTCTGCGTCCAACATGCCCAGCACGGAATGGTCGACGTGATTAG
CAAGAGGTGCGCACACCAGGGTTGTCGAAAAAGTCCGTCATTCGGATTTG
AAGAGGGCCGCATAAAGGAGTTCTGCGCCACGCACGCGAAGAATGGGATG
ACTGGCTACTGGATTTGGTCCCGGCCAGGCAGCACCAGTGCACTCGCTAC
GGATGATAACGCCGGCGCCGGCGGCGGTGGCAAGCGCCGGCGGCGCCATT
CGCAGGAGGTACGCGACACGGCGCGCCGTGATGGTGACTTGAGCCGAAGG
CTGAGGAGCCGTGCTACTGCCTTCGGTGAGGAGGAGACCGCTGTCTTGGC
GGCGGGGAAGAGCACGAGCGCGAGCAGTAAGCGAGCCCGCGTGTACGTCA
ACGACGATGCCGCTCGCGCCGCTTGTCCGGACCCAGTCAAAGAAGAGGTG
GTTGATCAAACGGTGATGGACGACACCGAGGGCCCATCGTCGGAGCCGGA
AGAACGAGGATCAGGGCAGCAAGCTCATCAAGAAAGCGAGTCTGCGCCCG
AGGTGGTCGTCGAGGGCTCCTCCTAA
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