mRNA_L-elsbetiae_contig7225.16081.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7225.16081.1
Unique NamemRNA_L-elsbetiae_contig7225.16081.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A6H5KSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.510e-28
Identity = 53/60 (88.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 SESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            SESPVEEF++RGRRVLVKRDDKMRLA+SGLSGNKARKLYALN+TPA SFP++VASHGGPQ
Sbjct:   30 SESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFPEVVASHGGPQ 89
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: D7G221_ECTSI (Similar to 1-Aminocyclopropane-1-Carboxylate Deaminase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G221_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.990e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 SESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVA 162
            SESPVEEF++RGRRVLVKRDDKMRLA+SGLSGNKARKLYALN+TPA SFP+  A
Sbjct:  187 SESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFPESNA 240
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A835YPC9_9STRA (Tryptophan synthase beta subunit-like PLP-dependent enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPC9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 SESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            ++SPV+ F +RGR VLVKRDDKMRL  SG+SGNKARKLY  N TPAD  P +V SHGG Q
Sbjct:    3 TQSPVDTFTIRGRTVLVKRDDKMRLKGSGISGNKARKLYTFNATPADQLPDLVVSHGGAQ 62
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A448Z2S8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2S8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.300e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 SESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            S SPVE   +RGR V VK DD++RLA SG+SGNKARK++ LN  PA+ FP  + S+GGPQ
Sbjct:   45 SPSPVEIRTIRGRTVHVKHDDQLRLAGSGISGNKARKMWTLNEIPAEEFPSCLVSYGGPQ 104
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A7S2DJY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJY8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.360e-12
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 SPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            S VE   VRGRR+ VKRDDK RL ++GL GNKARKLY+LN      FP+ + SHGGPQ
Sbjct:   58 SRVEAVEVRGRRIFVKRDDKYRLPETGLCGNKARKLYSLNNL--SPFPQDLVSHGGPQ 113
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A7S2LIY0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIY0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.730e-10
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    7 SPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRT-PADSFPKIVASHGGPQ 180
            SP+E  +V  RRV VKRDD +RL  S  SGNKARK+  L    PA+ FP +V S+GGPQ
Sbjct:   50 SPIETVMVNDRRVYVKRDDLLRLHGSNASGNKARKMLVLGEMIPAEDFPDVVVSYGGPQ 108
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A7S4CGT2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGT2_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 3.690e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 SPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            S V+ F VRG ++ VKRDD++RL  + LSGNKARK+YAL+R      P+++ S+GG Q
Sbjct:  114 SGVDAFTVRGHKIFVKRDDQLRLPGTNLSGNKARKMYALHRWGPGQVPRMLVSYGGAQ 171
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: A0A7S1TP75_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP75_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.110e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 ESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            ++ V+E ++RG  VLVKRDD++RL  SG+ GNK RKL+ LN      FP  +AS GGPQ
Sbjct:  113 DTDVDEVMIRGAPVLVKRDDQLRLLDSGVFGNKGRKLWWLNSRTEQQFPASLASFGGPQ 171
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BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: R1FIR6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FIR6_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 2.320e-6
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    7 SPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            SP+E F +RG ++LVKRDD++ L  SG+SGNKARKL AL        P ++ S GG Q
Sbjct:   17 SPIEAFSLRGTQLLVKRDDRLALG-SGVSGNKARKLLALEAMSPG--PSLIGSFGGHQ 71
[Close]
BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Match: R1DYP1_EMIHU (Selenoprotein O n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DYP1_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 2.420e-6
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    7 SPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFPKIVASHGGPQ 180
            SP+E F +RG ++LVKRDD++ L  SG+SGNKARKL AL        P ++ S GG Q
Sbjct:   17 SPIEAFSLRGTQLLVKRDDRLALG-SGVSGNKARKLLALEAMSPG--PSLIGSFGGHQ 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7225.16081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KSQ9_9PHAE5.510e-2888.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G221_ECTSI1.990e-2185.19Similar to 1-Aminocyclopropane-1-Carboxylate Deami... [more]
A0A835YPC9_9STRA1.670e-1868.33Tryptophan synthase beta subunit-like PLP-dependen... [more]
A0A448Z2S8_9STRA4.300e-1460.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2DJY8_9STRA4.360e-1262.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LIY0_9STRA2.730e-1055.93Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4CGT2_9EUGL3.690e-1051.72Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1TP75_9STRA5.110e-1052.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
R1FIR6_EMIHU2.320e-651.72Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DYP1_EMIHU2.420e-651.72Selenoprotein O n=1 Tax=Emiliania huxleyi TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7225contigL-elsbetiae_contig7225:8824..9738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D7G221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1-aminocyclopropane-1-carboxylate deaminase activity
EggNOG OGs2RXQ8@2759,COG2515@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.8168163-CDS-L-elsbetiae_contig7225:8823..88891622816804.8168163-CDS-L-elsbetiae_contig7225:8823..8889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 8824..8889 +
1691683826.4232388-CDS-L-elsbetiae_contig7225:8823..88891691683826.4232388-CDS-L-elsbetiae_contig7225:8823..8889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 8824..8889 +
1622816804.8271153-CDS-L-elsbetiae_contig7225:9624..97381622816804.8271153-CDS-L-elsbetiae_contig7225:9624..9738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 9625..9738 +
1691683826.4331145-CDS-L-elsbetiae_contig7225:9624..97381691683826.4331145-CDS-L-elsbetiae_contig7225:9624..9738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7225 9625..9738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7225.16081.1prot_L-elsbetiae_contig7225.16081.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7225 8824..9738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7225.16081.1

>prot_L-elsbetiae_contig7225.16081.1 ID=prot_L-elsbetiae_contig7225.16081.1|Name=mRNA_L-elsbetiae_contig7225.16081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
SESPVEEFIVRGRRVLVKRDDKMRLAQSGLSGNKARKLYALNRTPADSFP
KIVASHGGPQ
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mRNA from alignment at L-elsbetiae_contig7225:8824..9738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7225.16081.1 ID=mRNA_L-elsbetiae_contig7225.16081.1|Name=mRNA_L-elsbetiae_contig7225.16081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=915bp|location=Sequence derived from alignment at L-elsbetiae_contig7225:8824..9738+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGAGCCCCGTCGAGGAGTTCATTGTGCGGGGGAGGCGTGTACTGGT
GAAGAGGGACGACAAGGTAACTTGGTTTTTCGAGTGGAGGGGGGGGGGGG
GGGATCGTTTTTTTTTTACGGCGCGAGGCTAGGACAGCTTCGTGTTAGTT
TTCGATCGGAACGGAGGGGGGACGGTTCAGTTTTGTGTGGCGTCAGACCC
CCCCTTCCCCGAATACTCACCGTTTTCTCCACACCCTGCACACAGGCACC
TCTCTCCTTGCTACACCGGCACAAAACCTCTCGCCGTTTCCCCCACTCCC
TGCCCGAGCGGCTTCTCTCCTGAAATTAACGGGAGAGCGATATTGTGGGG
TGTGTCCGCGCCGATAGAGTCATCAGCAAGAGCTACGTCACTATATGGAA
TACCGATTGAATCTCACGGAGTCCCGTCTCAATGTGGGTTAGGTTCCATT
TTGGATTAACTGTTTTATTTTTCAGAACTGGGGGACGGAAAAGGCACCCG
TGCGCGGGGTGGGTGGATGGGTAGTGGATGATGGATTATTGGTGGACACC
ATCCCGCGGGCCGGGGGTCGGGATCGCACACACAGCAGGGGAGCAAACCA
CAGGTACAGCAGGTCTCTGTTCACAACTCTCCGCTTTGCCCCGCATTGCT
TTCTCGCTTGGCTTTTTGACGGATGCAACTCTCCGCTTTGCTCCGCAGTG
CTTTCGCTTGGCTTTTGACGGGTGAAACTCTCCGCTTTGCTCCGCATTGC
TCCGCATCGCCCCGCATTGCCCCGCATTGCTTTCGCTTGGCTTTTGACAA
GATGCGACTGGCGCAGAGCGGCCTGTCGGGGAACAAGGCGCGAAAGCTGT
ACGCGCTCAACCGGACCCCGGCCGACTCCTTCCCCAAGATTGTCGCCAGC
CACGGCGGTCCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7225:8824..9738+

>mRNA_L-elsbetiae_contig7225.16081.1 ID=mRNA_L-elsbetiae_contig7225.16081.1|Name=mRNA_L-elsbetiae_contig7225.16081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig7225:8824..9738+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGAGAGCCCCGTCGAGGAGTTCATTGTGCGGGGGAGGCGTGTACTGGT
GAAGAGGGACGACAAGAGCGAGAGCCCCGTCGAGGAGTTCATTGTGCGGG
GGAGGCGTGTACTGGTGAAGAGGGACGACAAGATGCGACTGGCGCAGAGC
GGCCTGTCGGGGAACAAGGCGCGAAAGCTGTACGCGCTCAACCGGACCCC
GGCCGACTCCTTCCCCAAGATTGTCGCCAGCCACGGCGGTCCGCAGATGC
GACTGGCGCAGAGCGGCCTGTCGGGGAACAAGGCGCGAAAGCTGTACGCG
CTCAACCGGACCCCGGCCGACTCCTTCCCCAAGATTGTCGCCAGCCACGG
CGGTCCGCAG
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