mRNA_L-elsbetiae_contig722.16071.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig722.16071.1
Unique NamemRNA_L-elsbetiae_contig722.16071.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig722.16071.1 vs. uniprot
Match: A0A6H5KLH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLH0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 2.670e-83
Identity = 151/257 (58.75%), Postives = 180/257 (70.04%), Query Frame = 3 
Query:  123 DHTDDAELGGFHNPMFSSSCGVPIPRDRSLFPSIEIPADKETTNISKASSLVMRRHGRKDGRKEGSLVDTTRQRL---KKTSSERQMRRLSSQDVPACVVVKKGDASDAGGILQHCAFRMEAFRVHTKSPSEG---PSTTTFLFVFHSGQPNQAALEITHKPRPTTAGAXXXXXXXXXXXXADDTILGRLPPSPTN-GEGRVTMTLGGMNVPHLPGEPYSCHIHQVGTVTFNPRKQAKGSYLYILSQEGRTLFTALS 872
            D  DD  + GFHNP+FS++     P+D  LFP+ +    +E     K+SS+VMRRH +KD R++G+LVD T++R+   +K +SERQMRR+SS DVPACV VK  DASDAG ILQHCAF MEAFRVHTK+ +     P+ TTF+FVFH GQPNQA LE+TH P   T               A D   G   P PT+ GEGRVTMTLGG NVPH PGEPYSC+I QVG VTFNPRKQA+G YLYILSQEGRTLFT+LS
Sbjct:   14 DAQDDVAVSGFHNPLFSNAVSG-APKDERLFPTTK---GEEANERRKSSSMVMRRHMKKDCRQDGTLVDKTKRRVDRSQKITSERQMRRVSSLDVPACVAVKSEDASDAGEILQHCAFHMEAFRVHTKNQTVAAGAPTPTTFMFVFHGGQPNQATLEVTHTPPCLTPARGK----------AGDG--GGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARG-YLYILSQEGRTLFTSLS 253
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig722.16071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLH0_9PHAE2.670e-8358.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig722contigL-elsbetiae_contig722:27343..31719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001460.1
Exons5
Model size1079
Cds size792
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.8655627-UTR-L-elsbetiae_contig722:27342..274251622816803.8655627-UTR-L-elsbetiae_contig722:27342..27425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig722 27343..27425 +
1691683825.773476-UTR-L-elsbetiae_contig722:27342..274251691683825.773476-UTR-L-elsbetiae_contig722:27342..27425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig722 27343..27425 +
1622816803.9521523-UTR-L-elsbetiae_contig722:31515..317191622816803.9521523-UTR-L-elsbetiae_contig722:31515..31719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig722 31516..31719 +
1691683825.8283346-UTR-L-elsbetiae_contig722:31515..317191691683825.8283346-UTR-L-elsbetiae_contig722:31515..31719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig722 31516..31719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.879519-CDS-L-elsbetiae_contig722:27425..275501622816803.879519-CDS-L-elsbetiae_contig722:27425..27550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 27426..27550 +
1691683825.782997-CDS-L-elsbetiae_contig722:27425..275501691683825.782997-CDS-L-elsbetiae_contig722:27425..27550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 27426..27550 +
1622816803.8938928-CDS-L-elsbetiae_contig722:29117..292521622816803.8938928-CDS-L-elsbetiae_contig722:29117..29252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 29118..29252 +
1691683825.7948065-CDS-L-elsbetiae_contig722:29117..292521691683825.7948065-CDS-L-elsbetiae_contig722:29117..29252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 29118..29252 +
1622816803.9112673-CDS-L-elsbetiae_contig722:29968..300801622816803.9112673-CDS-L-elsbetiae_contig722:29968..30080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 29969..30080 +
1691683825.8044355-CDS-L-elsbetiae_contig722:29968..300801691683825.8044355-CDS-L-elsbetiae_contig722:29968..30080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 29969..30080 +
1622816803.9256032-CDS-L-elsbetiae_contig722:30275..306291622816803.9256032-CDS-L-elsbetiae_contig722:30275..30629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 30276..30629 +
1691683825.812512-CDS-L-elsbetiae_contig722:30275..306291691683825.812512-CDS-L-elsbetiae_contig722:30275..30629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 30276..30629 +
1622816803.939309-CDS-L-elsbetiae_contig722:31449..315151622816803.939309-CDS-L-elsbetiae_contig722:31449..31515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 31450..31515 +
1691683825.82045-CDS-L-elsbetiae_contig722:31449..315151691683825.82045-CDS-L-elsbetiae_contig722:31449..31515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig722 31450..31515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig722.16071.1prot_L-elsbetiae_contig722.16071.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig722 27426..31515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig722.16071.1

>prot_L-elsbetiae_contig722.16071.1 ID=prot_L-elsbetiae_contig722.16071.1|Name=mRNA_L-elsbetiae_contig722.16071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
MTAMNMHLSLMGEDHTDDAELGGFHNPMFSSSCGVPIPRDRSLFPSIEIP
ADKETTNISKASSLVMRRHGRKDGRKEGSLVDTTRQRLKKTSSERQMRRL
SSQDVPACVVVKKGDASDAGGILQHCAFRMEAFRVHTKSPSEGPSTTTFL
FVFHSGQPNQAALEITHKPRPTTAGAAGGAGGGGGGGGADDTILGRLPPS
PTNGEGRVTMTLGGMNVPHLPGEPYSCHIHQVGTVTFNPRKQAKGSYLYI
LSQEGRTLFTALS*
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mRNA from alignment at L-elsbetiae_contig722:27343..31719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig722.16071.1 ID=mRNA_L-elsbetiae_contig722.16071.1|Name=mRNA_L-elsbetiae_contig722.16071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4377bp|location=Sequence derived from alignment at L-elsbetiae_contig722:27343..31719+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCATCCCACATCCACAATCCACCAGACACACACACACCAGACACGGGA
AGAGAAGGCTTCGCTGCCGAGAGGGAAAATAACATGACTGCGATGAACAT
GCACCTGAGCTTAATGGGAGAAGATCACACGGATGACGCCGAGCTGGGCG
GCTTTCACAACCCGATGTTTTCGAGCTCTTGCGGCGTCCCGATCCCGAGG
GACAGAAGGTATGCGTCCTGGCTACGTATGTACGGTACACCACAAGACCA
CCCCCGCAATTGAGTTGTAGCGAATGTTTTCTTGCCCTAGAGGCTGTGGT
AGAATACCCGCTACCTGAAACTTTCCGGTGGTAGCGGCGAGAGAGACGAA
GCAAAAATAGCGGATGATACCTTGATGTAGGTCCACGTGTGTTTTGTGCG
GGCAAGCGGTCCCGAAACGACCACCAAACAGAGGTAGCGCCAGACCCGAT
CATCTCCTCATCCCAGCTTGTTTCTAGAGCTGATCCTCTAGCCTTGTGTA
TGGCGGGATGGCTTTGTAGCACCAAGTAATAGAACAAACCCGGCCTCATG
ACGTGTTGACGTTTTCCCGATTTTTTTCGCTTCAATTATTTCCTCGTCAA
CATCCTGCAAGGGTCAAAAAGATCCAAGCTACGGTAACCCAGACACAGCA
GCAGCTAGGCACCGAGTCACCGAGTCGTATGCACATGTATGAGCTCGCCT
TGTAGCCGGTTGTTTGTGGGGCTGATACCCGCTCAGGTGCAGCACACGGG
TTATTTTTGTCACAGCTTTTTCCCCTCATTCACCGACATTCATCAGAGGC
GCGATCCGGTGTATCTAAAAAAATGTCGCAGCGGATAAATATCTGTTGGG
CACACGTTGAATGTTATGCCGGGTCTACATATCGAAAGCCTGCGTGCTCG
CAAGAGCACAGATGGATTGTTTTGGGTTGTTTTCAGCACGGCAGGCGCTT
GAGCGTTTGTGAGGCCACTTGATGCAGCGGGGCATTTTTTTTATTTATCC
ATGAAGTGTTCTCAGTTGTCCAAGGCTGTCACGTGAAAATATGAGAACAT
GAAGAGATGACGGAGCGAAAAACGTTGGGCGGTGGTGGTATGTATGTATG
TAGGCTTATCTTGAGTCTTTCTCTACGCCCAGGGCGAGGCGTCTTCGATA
GACGTCGCGATGCTGTACCCTTTCGCAGAGGTGATTCCATAAGAAACAAA
CGGTGGCAAATTGCATCAGGTGTGCTTCACTTTCTCAGTTTTCCGGACCC
GGTGACGTACATATATTTGCTGATACATTTCTGTCCTCGAGGTTTCCCGA
TGTATGTATCTAGTCTAGGTTGCGTACACTAGTCTATAGGTATCTAGTTA
GGAGTACCATACTATTTAGCGCAGATTTTGCAACGCTCTGCCACGGACGC
CACGCCCAGGGCCAAGAGCGAGCAGCGTGCGGAAAACATTCTTGCTACTA
GTATGTACCGCGGGCTACCTACTGCGGGCTACCTGCCGCTAGGTCCAAAC
CTCACTGCGAGACGAGGCCTACCGGCGAAGAAACCGCAAAAAAGCGTATC
TCGAGCTGAGAGTCTACGATTGAACTCGGCCGCAGGCCCCATACCGTTTG
TCGCAGCGACCCTTTTCCCCGCTTTCCCCTCATCCCCTCGTAACCCCACG
CCCGATTCGCCCACCACACTGCCGCATGCTATAAATAGGAAGTCGTGTTC
GGTTCGTCATATTTTTTGTAACGCTGACGTTTCGATACTGCTTTTGTTTT
TTTCGCTGCGGGTTTATTTTGCCAGCCTCTTCCCTTCGATAGAGATCCCC
GCCGACAAGGAGACTACGAACATCAGCAAAGCCTCCAGCCTGGTGATGCG
GCGGCACGGGCGAAAGGACGGCCGGAAGGAGGGTAGCTTGGTGGACACCA
CGAGACAGCGGTAGGTTATTTCTATTTTTATTTTTTTAATATTTCTTCAC
ATTTGTTTCCAGTGCTCGACGGGCTCCTCGCCACGAGAGCATCATCTTGC
CAGAGAGTACTGAGAGCCGTGGTCACATAGAAGGGTTCCTCTCCCCCAGG
ACCAAAGGGACGAACCGCACGACGGCTGTGCTGTTGATCCAACCACACGC
ACGTGTGCACAACATTTATCTTGTCAGTCGTAGATTCGACGTGGGTGCTC
TTTCACCGCTTGCGCTCGTGTGTACACTCGGAGGAAGAGAGGGCCGAAAC
TCTTCTCGCGTTAAAAGCAAAATGAAGTTGAAGGCAAGCACCGCAAAAGG
TGGGAGTGGGGGCCTCAAGGAGAGAAACCCTTCTGCGTGACCACGGTTCA
AAACTCAGGCGAGAAGGGCTCCTCCTTGCACAAGGAGCTCTTCGATCGCT
GGAAAAATAACGTGAAAAACAAACATCGCGAGCAGTATGCGCCGCCCCCC
CCCCCCTGCCTTTGCCCGCGGTGGTGCAGTTGGTGGGTGGTCGTGTGCCG
CGTACCGTCGACTCGTCTTGGTTTGATTCGCTCGACCATTCATCTATAAA
TCTAACCTCATCTGTCTTGAAAATAAATCAGGACACGAGGAAAATGGAAA
GATCCTCCCCACATTTTGTTTCCCCCGCTTTTTTTTCTGCCGAACCAAAA
CCATCATCAAACGACACTATATCTAGGTTGAAAAAGACGAGTAGCGAGAG
GCAAATGCGGCGACTCAGCTCCCAAGATGTGCCGGCGTGCGTGGTGGTGA
AGAAGGGAGACGCGTCCGATGCCGGGGGGATTCTGCAGGTGAGAGCAGCC
GGCCACACACGAGCGGATACATATACAGTAGTGCATCATGCAACTCCGTC
ATCCGAGCACTCGCTGACCCCCCCCCCCCGCGCGCGCGCCCGTCCGCTTC
CGCTTGCCACCCACCCCCCGGAACCGGTTTTCAACACGACTGACTCGGTG
CGCAAAATTCAATTGCCGGACAAACAAAAACAGCACTGTGCGTTCCGCAT
GGAAGCCTTCCGGGTGCACACCAAGTCCCCGTCCGAAGGGCCCTCCACCA
CGACGTTCCTGTTCGTGTTCCACAGCGGCCAGCCCAACCAGGCCGCCCTC
GAGATCACGCACAAGCCGCGGCCTACTACGGCGGGCGCGGCCGGGGGTGC
CGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGACACGATACTGGGGCGCC
TCCCGCCGTCCCCCACCAACGGGGAAGGGCGAGTCACGATGACCCTCGGC
GGGATGAACGTGCCCCATCTCCCGGGGGAGCCGTACTCGTGCCACATCCA
CCAGGTCGGCACGGTCACCTTCAACCCGCGCAAGCAGGTGCGGCAGGCGC
GCGGGACGCGCGGGGCGGAGAGAGAGGGATAGGGGAAGGGGGGGGGGGAG
TAGCAGCAGGGTCGAGGGTGTTTTCGGGCCGGCCCTCTGGCGATGCGTCA
CATCCCATCGTTGTGTGCTTGCTTGCTTGTGCGCAGAATAAATAACGACT
TGACTTGCGCAGGTTCCGCGGATGTACATACTTCTACGTAGGTATTTAGC
ATCGACGTACATATTGTAGAAGTGGGGCTTGCTTGTCCGCTGTGAAATAA
TTTTTCGAGCGCGGTCTTAATTAAAGAGCGACGACCGGATTTGTTTCCGG
ACCCCGGTCGGTCGGACCATGACTTGTCTGCCCGGGACAACCGGCCTTCG
CGAAGAAACTAACTTTTATCCAGGAAAGAGAGACAGGAGCTCCGTGACCC
TAGCCCTTACTCAAAACCCCGACCCCCCGGTTCCTATACCTTTATCCAAG
CAGCCAACTCGATCCCACACACTGCCACGCCTGGGAGTCGTTGGCAGAGG
CTCATCATCCCTGTTCCGTTTTGTAGATAATAACGAAAAGCAAACACAGC
AACAAACACAACAACAACAAAACAACAGCAACAGCAACAGGGCAAAGCCC
ATAACGCCCCTGGTCCCGAACGGTACGCGACAGGTGTCGTGCGGTATCAT
GCACAGTCTATGTATCTGTTTTGTTCTACTATTGAATAGGAGTGTTTGGA
ATCCCCCCCACCCCCCGCTGCTTTTCTAAATGTTTCCAAACTCTTTGTGT
TCCTCCGCGCTCGTGGGCTACGTACGTACCGCACGTACCGCAACCGCACA
CCGGCAGGCGAAAGGGAGCTACCTGTACATCCTCAGCCAAGAGGGTCGGA
CGCTCTTCACCGCGCTCAGCTGAAGCTTCTCCCGGACGCCGCCGCGAGAG
GAGGGGAAGGGGCGTGCCGTGTTCGAACCACCCCCCTAACCCCTCCCCCC
AACGATTGTCGCATGTCGACTCATTGCGTAGAGACTTGAGAGACTTGCGG
TTGCCGGCGTAGTACCGTCTGGCGCAAGCACGACGAGAAAAAGCTTGTTC
TGGATGGTGGTTTTGCCGATTACGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig722:27343..31719+

>mRNA_L-elsbetiae_contig722.16071.1 ID=mRNA_L-elsbetiae_contig722.16071.1|Name=mRNA_L-elsbetiae_contig722.16071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig722:27343..31719+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGCGATGAACATGCACCTGAGCTTAATGGGAGAAGATCACACGGA
TGACGCCGAGCTGGGCGGCTTTCACAACCCGATGTTTTCGAGCTCTTGCG
GCGTCCCGATCCCGAGGGACAGAAGATGACTGCGATGAACATGCACCTGA
GCTTAATGGGAGAAGATCACACGGATGACGCCGAGCTGGGCGGCTTTCAC
AACCCGATGTTTTCGAGCTCTTGCGGCGTCCCGATCCCGAGGGACAGAAG
CCTCTTCCCTTCGATAGAGATCCCCGCCGACAAGGAGACTACGAACATCA
GCAAAGCCTCCAGCCTGGTGATGCGGCGGCACGGGCGAAAGGACGGCCGG
AAGGAGGGTAGCTTGGTGGACACCACGAGACAGCGCCTCTTCCCTTCGAT
AGAGATCCCCGCCGACAAGGAGACTACGAACATCAGCAAAGCCTCCAGCC
TGGTGATGCGGCGGCACGGGCGAAAGGACGGCCGGAAGGAGGGTAGCTTG
GTGGACACCACGAGACAGCGGTTGAAAAAGACGAGTAGCGAGAGGCAAAT
GCGGCGACTCAGCTCCCAAGATGTGCCGGCGTGCGTGGTGGTGAAGAAGG
GAGACGCGTCCGATGCCGGGGGGATTCTGCAGGTTGAAAAAGACGAGTAG
CGAGAGGCAAATGCGGCGACTCAGCTCCCAAGATGTGCCGGCGTGCGTGG
TGGTGAAGAAGGGAGACGCGTCCGATGCCGGGGGGATTCTGCAGCACTGT
GCGTTCCGCATGGAAGCCTTCCGGGTGCACACCAAGTCCCCGTCCGAAGG
GCCCTCCACCACGACGTTCCTGTTCGTGTTCCACAGCGGCCAGCCCAACC
AGGCCGCCCTCGAGATCACGCACAAGCCGCGGCCTACTACGGCGGGCGCG
GCCGGGGGTGCCGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGACACGAT
ACTGGGGCGCCTCCCGCCGTCCCCCACCAACGGGGAAGGGCGAGTCACGA
TGACCCTCGGCGGGATGAACGTGCCCCATCTCCCGGGGGAGCCGTACTCG
TGCCACATCCACCAGGTCGGCACGGTCACCTTCAACCCGCGCAAGCAGCA
CTGTGCGTTCCGCATGGAAGCCTTCCGGGTGCACACCAAGTCCCCGTCCG
AAGGGCCCTCCACCACGACGTTCCTGTTCGTGTTCCACAGCGGCCAGCCC
AACCAGGCCGCCCTCGAGATCACGCACAAGCCGCGGCCTACTACGGCGGG
CGCGGCCGGGGGTGCCGGCGGCGGCGGCGGCGGCGGCGGCGCCGACGACA
CGATACTGGGGCGCCTCCCGCCGTCCCCCACCAACGGGGAAGGGCGAGTC
ACGATGACCCTCGGCGGGATGAACGTGCCCCATCTCCCGGGGGAGCCGTA
CTCGTGCCACATCCACCAGGTCGGCACGGTCACCTTCAACCCGCGCAAGC
AGGCGAAAGGGAGCTACCTGTACATCCTCAGCCAAGAGGGTCGGACGCTC
TTCACCGCGCTCAGCTGAGCGAAAGGGAGCTACCTGTACATCCTCAGCCA
AGAGGGTCGGACGCTCTTCACCGCGCTCAGCTGA
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