mRNA_L-elsbetiae_contig7212.16062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7212.16062.1
Unique NamemRNA_L-elsbetiae_contig7212.16062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7212.16062.1 vs. uniprot
Match: A0A6H5LDS9_9PHAE (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS9_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 1.120e-125
Identity = 179/228 (78.51%), Postives = 199/228 (87.28%), Query Frame = 1 
Query:    1 MDFKTKASRALCWAVKEQTLDGLEAHASRAGLKLEQAWKAPRGEGFKAAAARLIVDGQDVLIVAFRATFGNDEWLEYPQKYWKNRFIPHDGCEAGTDLKVFSVWSLTLDEVWKVSGDKPDGPKDNLRGLIWRQLNAGNRVWLAGHSKGGAVATTAASRLVLGDSSVGDKEEMADPAVRRPPPELLSVRGGPLSRLSVLTYNAPMAFSAPLADLYDEKLAEVAGRGEAG 684
            +++K   SR LCWAVKE TL+GLE+HA++ GL + QAW+APRGEGFKAAAAR  VD +DVLIVAFRAT GN+EWLEYPQKY+K R IPHDG   GT+LKVF VWSLTLDEVWKV GDKPDGPKDNLRGLIWRQLNAGNRVWL GHSKGGAVATTAASRL+LGDSSVG KEE ADPAVRRP P++LS+RGGPLSRLSV TYNAPMAFS PLADLYD ++AE+ GR E G
Sbjct:    9 LEYKKMISRELCWAVKEPTLEGLESHAAKHGLTIVQAWRAPRGEGFKAAAARFFVDAEDVLIVAFRATIGNEEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNLRGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAFSIPLADLYDARMAEI-GRREGG 235
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BLAST of mRNA_L-elsbetiae_contig7212.16062.1 vs. uniprot
Match: D7FQZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ6_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 1.880e-115
Identity = 166/206 (80.58%), Postives = 182/206 (88.35%), Query Frame = 1 
Query:    1 MDFKTKASRALCWAVKEQTLDGLEAHASRAGLKLEQAWKAPRGEGFKAAAARLIVDGQDVLIVAFRATFGNDEWLEYPQKYWKNRFIPHDGCEAGTDLKVFSVWSLTLDEVWKVSGDKPDGPKDNLRGLIWRQLNAGNRVWLAGHSKGGAVATTAASRLVLGDSSVGDKEEMADPAVRRPPPELLSVRGGPLSRLSVLTYNAPMAF 618
            +++K   SR LCWAVKE TL+GLE+HA++ GL + QAW+APRGEGFKAAAAR +VD  DVLIVAFRAT GNDEWLEYPQKY+K R IPHDG   GT+LKVF VWSLTLDEVWKV GDKPDGPKDNLRGLIWRQLNAGNRVWL GHSKGGAVATTAASRL+LGDSSVG KEE ADPAVRRP P++LS+RGGPLSRLSV TYNAPMAF
Sbjct:    9 LEYKKAISRELCWAVKETTLEGLESHAAKHGLTIVQAWRAPRGEGFKAAAARFVVDAADVLIVAFRATIGNDEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNLRGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAF 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7212.16062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDS9_9PHAE1.120e-12578.51Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
D7FQZ6_ECTSI1.880e-11580.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7212contigL-elsbetiae_contig7212:5586..9779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-09_003150.1
Exons3
Model size983
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7212.16062.1prot_L-elsbetiae_contig7212.16062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7212 5603..9779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.2456164-UTR-L-elsbetiae_contig7212:5585..56021622816803.2456164-UTR-L-elsbetiae_contig7212:5585..5602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7212 5586..5602 -
1691683825.413777-UTR-L-elsbetiae_contig7212:5585..56021691683825.413777-UTR-L-elsbetiae_contig7212:5585..5602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7212 5586..5602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.2589293-CDS-L-elsbetiae_contig7212:5602..60731622816803.2589293-CDS-L-elsbetiae_contig7212:5602..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 5603..6073 -
1691683825.4251738-CDS-L-elsbetiae_contig7212:5602..60731691683825.4251738-CDS-L-elsbetiae_contig7212:5602..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 5603..6073 -
1622816803.2694838-CDS-L-elsbetiae_contig7212:6801..69661622816803.2694838-CDS-L-elsbetiae_contig7212:6801..6966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 6802..6966 -
1691683825.4340982-CDS-L-elsbetiae_contig7212:6801..69661691683825.4340982-CDS-L-elsbetiae_contig7212:6801..6966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 6802..6966 -
1622816803.281696-CDS-L-elsbetiae_contig7212:9449..97791622816803.281696-CDS-L-elsbetiae_contig7212:9449..9779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 9450..9779 -
1691683825.4435205-CDS-L-elsbetiae_contig7212:9449..97791691683825.4435205-CDS-L-elsbetiae_contig7212:9449..9779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7212 9450..9779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7212.16062.1

>prot_L-elsbetiae_contig7212.16062.1 ID=prot_L-elsbetiae_contig7212.16062.1|Name=mRNA_L-elsbetiae_contig7212.16062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=322bp
MDFKTKASRALCWAVKEQTLDGLEAHASRAGLKLEQAWKAPRGEGFKAAA
ARLIVDGQDVLIVAFRATFGNDEWLEYPQKYWKNRFIPHDGCEAGTDLKV
FSVWSLTLDEVWKVSGDKPDGPKDNLRGLIWRQLNAGNRVWLAGHSKGGA
VATTAASRLVLGDSSVGDKEEMADPAVRRPPPELLSVRGGPLSRLSVLTY
NAPMAFSAPLADLYDEKLAEVAGRGEAGAGGGGFFHLRGGGGEGEGQQGE
EEEEQQHVRFEHRSDRVRKLPPSMGMRHVGERVLEGSGLIEDAGVLTGAV
IAIGGVVAALIAAAAKVVNSH*
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mRNA from alignment at L-elsbetiae_contig7212:5586..9779-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7212.16062.1 ID=mRNA_L-elsbetiae_contig7212.16062.1|Name=mRNA_L-elsbetiae_contig7212.16062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4194bp|location=Sequence derived from alignment at L-elsbetiae_contig7212:5586..9779- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTTTAAAACGAAAGCTAGCCGAGCGCTCTGCTGGGCCGTCAAGGA
GCAAACCCTCGATGGACTCGAGGCGCACGCGAGCAGAGCCGGACTCAAGC
TCGAACAGGCATGGAAAGCTCCCAGAGGCGAGGGCTTCAAGGCGGCAGCG
GCGAGGCTCATTGTGGATGGTCAGGACGTTTTAATCGTGGCCTTTCGGGC
GACCTTTGGGAATGACGAATGGCTCGAGTACCCGCAAAAGTACTGGAAGA
ATAGGTTCATTCCCCACGATGGATGCGAAGCTGGGACTGACCTCAAAGTG
TTTAGTGTCTGGAGCCTAACGCTGGACGAGGTGCGTGATGTGCCGGCATT
TTATCACCTGATCTTGAACAACGTGTCATTTTGCGTTTGCACCTGGTCTG
AGCGAAGATTTAAAGAAACGAAAGTGCCTTCACGGCAGGGCTCAGCAGGG
AGATGTTTGTCCGCAGCGGATGTTTTCTGCTGACGTCTAGAATAGAGAAC
GAGGAACGAGGGCGAGAGTTGATTGCCCGGAGAAAGGGAGAAAACAACAG
GGATCAGCCCTCTGTGCGTTCTGTTCCCCTGTCATGTTTGCTTCCACACG
TTCATGGATCACCAACAACCTCTCTGTTCTTTCTCTCTGTTTGGCTGTTC
GTGAACGTGTTTTTTCAAAAGTTCAACTCAGCATTTTCCACGAAAGGGAT
TTACGATAAATAGTACGAATATGCTGTACAGCAGTATAGGTACGCCCGCC
CATAAGAAACACATTCCTATTTGAAGCGAGGCTCAGATTTTCAAAAATTA
AGACGGGCGAGGCTCGGCATCTGCTGCACATAAGAGAAAGGTGCCCCCCC
ACTATGTACCTGATACCTGGCGACCCCGCTCTACCCCTACCAGCACATGT
ACAAACACGATGTCGACAGTAGTGTAAACGTAGGTATGTATGTACAATAG
TCTACCTGGTAGACACTTTCCCCCAAAAATATCGAAAAGTTGACAGCCAG
CGTCGCCAGATAGTACTGTGAAACATTTCCGCCCGCCGCTCCAGCAGCAG
GGCGGCGAGGTAGCGCTGATTTTTGAAGATTGAAAGTGGCGACATTTCTT
TACACCAGGGCTGACTTGGGCAAGCGGAAGCACTAGGGGGCGTTGAACAC
GGAGCAGTTCGGACTGCTTAAAAAATAGAGCAAAACTCATTTATGGAGTC
AGTGACTCAGAGGAGGAGAGCACGGGGGGGAGGCAGTGTTTACTGCTGAT
GTGTTCCGCTCGTCCAATCGTCCAATCGGGCATTTTTTTGTAGTGATCCA
CCCGTCACTAGGTGCTTGTCGGGCAGCAAAAATCGACGCCCGCACGCAAG
CGCCTTTTTGTTCAGAATCTCCGAAAAATCGAAAAATCCGTGCTTTAATC
AAGTCAATACAGAAACAAGTAGTCTAGTCCGGGGTCTGGTTTCTTTTCCA
TATTAATCTCGGTGCAATAGCGATATTTTTGTAACAATCTCCGATCTCTC
GCGGTCAAATAAAACACGGGCAAACTAGGAACACGTCAGAGAGAAAAAAA
CTTATGTATCAGCAAGCAGATAATTACCGCCACCTCCGCCACTACTGCTG
CCATGTTAGCTCGTTCGTCGTGGCCCATGTTGCCCACTACTGTTTTTACA
CAGCGTGAGTGCGCGTGCGTGTCTGCCTGGCAACAGCTTCAACAAAGTAG
CCCTTCCTTGTTGAAGCGAAAAGAGACGAAATATATTTATCTTAAAAAAA
AACGTCGAGGAGATCAGTCAGTACACGACACTGTCTATTTAGACCTGCCG
TTCCTTCTTTGTGGAACAACTGGACGCACTGCCGTCAGCACGCACGCATA
TGCGCTCTCGGTAGAAGCAGTCGAAGAATCAACGGGGGGTGGGGATGGGG
GGGGGGGGTCAACACCCAAGCCCCGCGAACAAACAGCCCAGCAGCAGCCG
CAGCAGTATTAAGTGGAAGTACATCAGAGACAGACAGAGATTTGTTTCGA
CCACCATACATATGTACGTACACACAAACACGCGTATGCATGTGCAGACA
AAACGACACTTTTTCTCTATCCACCAGCAACCAATGTGGTCCTGGTTCAA
TAGGTCCCGCGTGCAGAGCTCGCTGGTTATATTATTAGGATGTTGCCTCT
CTGCGTTGGACAATGTCGGCCACTACTTGATACTTCATGGCGGCCCGCAA
CCAAATATATACCCTTCTCCCAGCCTCCAATATACCACCGGCAGGCTGTC
TGCAAGAATCCACTCCTTGGTTCACTGCCCGATATCTTATCCCTACTGCC
CCTTCGGTTCAGTATGGCTGCTGCCCGGCACGCCCACAAGCGGTGGGCGC
ACCCCACAAAATATTGCGATACATAAAGCCGTTCCTTACAGGACATAAAA
AAACTAACAGAAAAAGTAGCATTGGCCCGTGAATGTCACTGGGCGCTAAT
TACGTGAAAACTCAGCAGCAGTCGGCAAGAAAAAGCTGAGCACCACCCAG
TTCTCGGCCCCTGGGGCACCGATCGCAATCGGAGCACTTCAGGCGTGTGC
TGTATGGTAATATCTCTGGGTGTGCCAGTCGTATGGGGCATAGGCCTTGC
GTGTGGCGAGAGCTTTGTGGCGGAGTACAATCCGATCGAACTTTTCGGCC
CCGCAACGCGATCGGATTTTGATAAGAAACGGCCCAACACAGAGAATGAG
CCTCACAACTCAAAATCCAACCTACCCCGAGCCGATAGATGCATTCCCTT
TGCCATACATCCCGCACCGCCTCAGCTCATATTTTCAAACCACGATAATC
GAAACTGATCAAGGTCTGGAAAGTGTCTGGCGACAAACCGGACGGGCCCA
AAGACAACCTGCGCGGCCTTATCTGGCGGCAGCTGAACGCAGGCAACAGG
GTATGGCTGGCGGGGCATAGCAAGGGCGGGGCCGTCGCAACCACCGCAGC
TTCTCGTCTTGTCCTGGGAGATTCATCGGTGCGTGCCTCAAGTGTACTTG
GGGGGTGGTATGGTACAATAGGTAGATAGATATGCAGCAGATCACTATTT
TTGTAAAAAACTTGATAGGCAAGATGCATATCTATCTCGGCAAGATGATT
CTACGACCCTGGCGGTACGACCGTCATAAATGTTTCGCAGTGTGCTGTAC
ACGCGCCAGGTACTCCATGCCTTTTATCATGCCCAAATACCGCGTACAGT
AGGGAGGCATGTTCTATGAGGTACCAATGAAGCGTAGTTTGTCTGTATCA
CCAAGTTTGTCTGTATCACCGCAACTGCTTGATGCCATCACAGACAAGGC
CATAACGTCGGACTGGAGGAGGGGGGGGGGGCTCCGCCTATGATGTGATT
GACCTCCAGATAGGCACTAGAACATATGTATTAACCTAGACCCGCTGGAT
GCATGAAAGCGGAGGCTGTTGGTATATACAACCGTCCCGTGCAGCAATAC
CAGCGTCATCTTGAATACGCCCCCCCCGCGCCCCCCTTTCGGCAGGTGAC
TCCTCGGTATGTCGCCATTGAGAGTTGGTTAAGTTGTATTTCGCTCTTTC
TGTGTGTGTGTTTTTTCTGGTGCTTGGTTTTGGCATGCACATACCCTTGT
CGCCCACGATGGAGGAGAGTTCCGCATCTAAACCTGCGGAAAATTGTTTC
TATGTTTTGCTTTTGCGCGCCCCTGCATACCATACGTGCATGCTGTCTTT
CGTCAGGTGGGCGACAAGGAAGAGATGGCCGACCCAGCCGTGCGCCGCCC
GCCACCAGAGCTGCTCTCCGTGCGCGGCGGGCCGCTGTCCCGGCTCTCGG
TCCTGACGTACAACGCGCCGATGGCGTTCTCCGCGCCCCTGGCAGACCTC
TACGACGAGAAGTTGGCCGAGGTTGCGGGTCGGGGGGAGGCGGGCGCGGG
AGGAGGAGGGTTCTTCCACTTGAGAGGAGGAGGAGGAGAGGGGGAGGGGC
AGCAGGGGGAGGAAGAAGAGGAGCAGCAGCACGTGCGGTTTGAGCACAGG
TCGGACCGGGTCAGGAAGCTTCCGCCGTCGATGGGCATGAGACACGTTGG
CGAGAGAGTTCTGGAAGGGTCCGGGTTGATCGAGGACGCCGGGGTGCTCA
CAGGGGCCGTGATTGCGATCGGAGGGGTGGTGGCGGCGTTGATCGCAGCG
GCAGCCAAAGTCGTCAACAGCCACTGAAAGCGATACTCGGAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7212:5586..9779-

>mRNA_L-elsbetiae_contig7212.16062.1 ID=mRNA_L-elsbetiae_contig7212.16062.1|Name=mRNA_L-elsbetiae_contig7212.16062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1932bp|location=Sequence derived from alignment at L-elsbetiae_contig7212:5586..9779- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTTTAAAACGAAAGCTAGCCGAGCGCTCTGCTGGGCCGTCAAGGA
GCAAACCCTCGATGGACTCGAGGCGCACGCGAGCAGAGCCGGACTCAAGC
TCGAACAGGCATGGAAAGCTCCCAGAGGCGAGGGCTTCAAGGCGGCAGCG
GCGAGGCTCATTGTGGATGGTCAGGACGTTTTAATCGTGGCCTTTCGGGC
GACCTTTGGGAATGACGAATGGCTCGAGTACCCGCAAAAGTACTGGAAGA
ATAGGTTCATTCCCCACGATGGATGCGAAGCTGGGACTGACCTCAAAGTG
TTTAGTGTCTGGAGCCTAACGCTGGACGAGATGGATTTTAAAACGAAAGC
TAGCCGAGCGCTCTGCTGGGCCGTCAAGGAGCAAACCCTCGATGGACTCG
AGGCGCACGCGAGCAGAGCCGGACTCAAGCTCGAACAGGCATGGAAAGCT
CCCAGAGGCGAGGGCTTCAAGGCGGCAGCGGCGAGGCTCATTGTGGATGG
TCAGGACGTTTTAATCGTGGCCTTTCGGGCGACCTTTGGGAATGACGAAT
GGCTCGAGTACCCGCAAAAGTACTGGAAGAATAGGTTCATTCCCCACGAT
GGATGCGAAGCTGGGACTGACCTCAAAGTGTTTAGTGTCTGGAGCCTAAC
GCTGGACGAGGTCTGGAAAGTGTCTGGCGACAAACCGGACGGGCCCAAAG
ACAACCTGCGCGGCCTTATCTGGCGGCAGCTGAACGCAGGCAACAGGGTA
TGGCTGGCGGGGCATAGCAAGGGCGGGGCCGTCGCAACCACCGCAGCTTC
TCGTCTTGTCCTGGGAGATTCATCGGTCTGGAAAGTGTCTGGCGACAAAC
CGGACGGGCCCAAAGACAACCTGCGCGGCCTTATCTGGCGGCAGCTGAAC
GCAGGCAACAGGGTATGGCTGGCGGGGCATAGCAAGGGCGGGGCCGTCGC
AACCACCGCAGCTTCTCGTCTTGTCCTGGGAGATTCATCGGTGGGCGACA
AGGAAGAGATGGCCGACCCAGCCGTGCGCCGCCCGCCACCAGAGCTGCTC
TCCGTGCGCGGCGGGCCGCTGTCCCGGCTCTCGGTCCTGACGTACAACGC
GCCGATGGCGTTCTCCGCGCCCCTGGCAGACCTCTACGACGAGAAGTTGG
CCGAGGTTGCGGGTCGGGGGGAGGCGGGCGCGGGAGGAGGAGGGTTCTTC
CACTTGAGAGGAGGAGGAGGAGAGGGGGAGGGGCAGCAGGGGGAGGAAGA
AGAGGAGCAGCAGCACGTGCGGTTTGAGCACAGGTCGGACCGGGTCAGGA
AGCTTCCGCCGTCGATGGGCATGAGACACGTTGGCGAGAGAGTTCTGGAA
GGGTCCGGGTTGATCGAGGACGCCGGGGTGCTCACAGGGGCCGTGATTGC
GATCGGAGGGGTGGTGGCGGCGTTGATCGCAGCGGCAGCCAAAGTCGTCA
ACAGCCACTGAGTGGGCGACAAGGAAGAGATGGCCGACCCAGCCGTGCGC
CGCCCGCCACCAGAGCTGCTCTCCGTGCGCGGCGGGCCGCTGTCCCGGCT
CTCGGTCCTGACGTACAACGCGCCGATGGCGTTCTCCGCGCCCCTGGCAG
ACCTCTACGACGAGAAGTTGGCCGAGGTTGCGGGTCGGGGGGAGGCGGGC
GCGGGAGGAGGAGGGTTCTTCCACTTGAGAGGAGGAGGAGGAGAGGGGGA
GGGGCAGCAGGGGGAGGAAGAAGAGGAGCAGCAGCACGTGCGGTTTGAGC
ACAGGTCGGACCGGGTCAGGAAGCTTCCGCCGTCGATGGGCATGAGACAC
GTTGGCGAGAGAGTTCTGGAAGGGTCCGGGTTGATCGAGGACGCCGGGGT
GCTCACAGGGGCCGTGATTGCGATCGGAGGGGTGGTGGCGGCGTTGATCG
CAGCGGCAGCCAAAGTCGTCAACAGCCACTGA
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