mRNA_L-elsbetiae_contig7209.16058.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7209.16058.1
Unique NamemRNA_L-elsbetiae_contig7209.16058.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 3.660e-47
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            + EMVG+HGVV+YSK+YCP+C KAKKAL  +GAKYE IELD+V  GSAIQDAL +ITGQRSVPNVFIGG+SIGGGDDTVRLQKSGELLTKVTA GA+
Sbjct:    8 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.890e-29
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            IK  V    VV+YSKSYCPYC KAK+AL +I A +E IELDQV  G+ IQ AL  +TG  +VP VF+GG  IGGGDDT R Q++GEL+  VTA G +
Sbjct:    5 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.070e-29
Identity = 52/98 (53.06%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGA-KYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            I++ +G + VV++SK+YCP+C KAK++L ++G   ++++ELDQ+  GS+IQ  L+++TGQR+VPNVFIGG SIGGGDDT  L++SG+L T + A GA+
Sbjct:   13 IQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: UPI0012638DCE (glutaredoxin n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012638DCE)

HSP 1 Score: 111 bits (278), Expect = 3.750e-27
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:    8 KEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            KEMV  + VV++SK+YCP+CV  KK LD +GA Y+TIELD    GS IQ AL   TGQR+VPNVFIGG  IGG D T  + K G+LL  +T  GAI
Sbjct:    7 KEMVQSNSVVVFSKTYCPFCVTVKKLLDDVGATYKTIELDTESDGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTGIHKEGKLLPLLTESGAI 102
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A7S0Q1V6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V6_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 9.880e-27
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            ++++V +H V+++SKSYCPYC  AK+ L   GAK+  IELD+   G+AIQ+AL+ +TGQ++VPNVF+GG SIGGG +T  L +SGEL  K+ A  A+
Sbjct:   20 VEKLVEEHAVMVFSKSYCPYCKLAKEVLTKEGAKFHAIELDKRDDGNAIQNALLKLTGQKTVPNVFVGGKSIGGGSETKALSQSGELKKKLVAAKAL 116
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: L1ILS6_GUITC (Glutaredoxin domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ILS6_GUITC)

HSP 1 Score: 110 bits (275), Expect = 1.350e-26
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:    8 KEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            K+ +  + VV++SKSYCP+C KAK ALDS+ AKYE +ELD    G+AIQDAL T+TG RSVP VF+ G  IGGGDD V  + SGEL T +   GA+
Sbjct:   20 KKAIENNPVVVFSKSYCPFCAKAKDALDSLNAKYEVLELDLRDDGNAIQDALNTLTGGRSVPRVFVKGKFIGGGDDMVSKKASGELETILQEAGAL 115
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A662X5U1_9STRA (Glutaredoxin domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5U1_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.430e-26
Identity = 52/97 (53.61%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            ++  +    VV+YSKSYCPYC K K  L  +GAKYE +ELDQ+ GG   QDAL TITGQ +VPNVF+GG SIGG  D  +L K+G L   +   GA+
Sbjct:   20 VEAQISASPVVVYSKSYCPYCSKTKALLSKLGAKYEVVELDQISGGDEQQDALETITGQSTVPNVFVGGKSIGGNSDVQKLHKAGNLEPLLEQNGAL 116
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A7N0UBR4_KALFE (Glutaredoxin domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UBR4_KALFE)

HSP 1 Score: 110 bits (274), Expect = 1.540e-26
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:    8 KEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            K++V  H VV++SKSYCPYCV+ KK LD +GA ++ +ELD    GS IQ AL   T QR+VPNVFIGG  IGG DDTV L   G+L+  +T  GAI
Sbjct:    7 KDLVATHPVVVFSKSYCPYCVRVKKLLDDLGATFKALELDVESDGSEIQAALAEWTKQRTVPNVFIGGKHIGGCDDTVGLNSQGKLVPLLTEAGAI 102
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A6D2L6S0_9BRAS (Glutaredoxin domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L6S0_9BRAS)

HSP 1 Score: 109 bits (273), Expect = 2.580e-26
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:    8 KEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            K++V  + VV++SKS+CPYCV+ K  L  +GAK+  +ELD+   GS IQ AL   TGQR+VPNVFIGG  IGG D T  L K+G+L+T +T  GAI
Sbjct:    7 KDLVSNNAVVVFSKSFCPYCVRVKDLLKQLGAKFIAVELDKESDGSKIQSALAEWTGQRTVPNVFIGGKHIGGCDSTTNLHKNGKLVTLLTEAGAI 102
[Close]
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Match: A0A329S920_9STRA (GST N-terminal domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S920_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.710e-26
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:    5 IKEMVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDALVTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI 295
            ++  +    VV+YSKSYCPYC K K  L  +GAKYE +ELDQ+ GGS  QDAL  +TGQ +VPNVF+GG SIGG  D  +L K+G L   +   GA+
Sbjct:    8 VQAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKYEVVELDQIDGGSEQQDALEDLTGQSTVPNVFVGGKSIGGNSDVRKLHKAGNLGPLLKESGAL 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7209.16058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC00_ECTSI3.660e-4780.41Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A836CIL9_9STRA3.890e-2958.76Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S1B3V4_9STRA5.070e-2953.06Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
UPI0012638DCE3.750e-2758.33glutaredoxin n=1 Tax=Pistacia vera TaxID=55513 Rep... [more]
A0A7S0Q1V6_9EUKA9.880e-2752.58Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
L1ILS6_GUITC1.350e-2657.29Glutaredoxin domain-containing protein (Fragment) ... [more]
A0A662X5U1_9STRA1.430e-2653.61Glutaredoxin domain-containing protein (Fragment) ... [more]
A0A7N0UBR4_KALFE1.540e-2656.25Glutaredoxin domain-containing protein n=1 Tax=Kal... [more]
A0A6D2L6S0_9BRAS2.580e-2654.17Glutaredoxin domain-containing protein n=1 Tax=Mic... [more]
A0A329S920_9STRA2.710e-2652.58GST N-terminal domain-containing protein n=3 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7209contigL-elsbetiae_contig7209:6441..8265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog164328.Phyra71855
KEGG koko:K03676
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutaredoxin
EggNOG OGs3QG6U@4776,COG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
Exons3
Model size936
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7209.16058.1prot_L-elsbetiae_contig7209.16058.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7209 7079..8252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.777322-UTR-L-elsbetiae_contig7209:6440..70781622816802.777322-UTR-L-elsbetiae_contig7209:6440..7078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7209 6441..7078 -
1691683825.0435917-UTR-L-elsbetiae_contig7209:6440..70781691683825.0435917-UTR-L-elsbetiae_contig7209:6440..7078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7209 6441..7078 -
1622816802.8282661-UTR-L-elsbetiae_contig7209:8252..82651622816802.8282661-UTR-L-elsbetiae_contig7209:8252..8265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7209 8253..8265 -
1691683825.0868702-UTR-L-elsbetiae_contig7209:8252..82651691683825.0868702-UTR-L-elsbetiae_contig7209:8252..8265Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7209 8253..8265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.791866-CDS-L-elsbetiae_contig7209:7078..71621622816802.791866-CDS-L-elsbetiae_contig7209:7078..7162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 7079..7162 -
1691683825.0572503-CDS-L-elsbetiae_contig7209:7078..71621691683825.0572503-CDS-L-elsbetiae_contig7209:7078..7162Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 7079..7162 -
1622816802.803752-CDS-L-elsbetiae_contig7209:7540..76421622816802.803752-CDS-L-elsbetiae_contig7209:7540..7642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 7541..7642 -
1691683825.067413-CDS-L-elsbetiae_contig7209:7540..76421691683825.067413-CDS-L-elsbetiae_contig7209:7540..7642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 7541..7642 -
1622816802.817607-CDS-L-elsbetiae_contig7209:8153..82521622816802.817607-CDS-L-elsbetiae_contig7209:8153..8252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 8154..8252 -
1691683825.0769374-CDS-L-elsbetiae_contig7209:8153..82521691683825.0769374-CDS-L-elsbetiae_contig7209:8153..8252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7209 8154..8252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7209.16058.1

>prot_L-elsbetiae_contig7209.16058.1 ID=prot_L-elsbetiae_contig7209.16058.1|Name=mRNA_L-elsbetiae_contig7209.16058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MVGKHGVVMYSKSYCPYCVKAKKALDSIGAKYETIELDQVPGGSAIQDAL
VTITGQRSVPNVFIGGSSIGGGDDTVRLQKSGELLTKVTACGAI*
back to top

mRNA from alignment at L-elsbetiae_contig7209:6441..8265-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7209.16058.1 ID=mRNA_L-elsbetiae_contig7209.16058.1|Name=mRNA_L-elsbetiae_contig7209.16058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1825bp|location=Sequence derived from alignment at L-elsbetiae_contig7209:6441..8265- (Laminarionema elsbetiae ELsaHSoW15)
TGGCATCAAAGAAATGGTAGGCAAGCACGGCGTGGTGATGTACTCCAAGT
CGTACTGCCCCTACTGCGTCAAGGCCAAGAAGGCTTTGGACTCCATCGGG
GCCAAGTACGAGGTGCGTCTGCATCTGGGCGAGTCTTGGATCAGCCTCGA
CCCGCCCTACAAGTTCCGGATATTTTGTGTGTGAATATTTAGTTACACAC
AGAGTTGTCGATCACGATCTAAAGAGCGCCACCCAAGTTGGTGGTTTCCC
ACCTACACACTACATACCTTTACCTACACACTACATACCTTTTGGAACGC
ATCATAGATGTTCAAGGTCCCAGCTGCTGCTCTTCCGTGTAAGAAGAACG
GCACAGATGGCCCTAAAAAACTCGTGCGAGCAGCTCAATGTATGTAGAAT
TGTTTCGTCTCAGCTACTGCCTACCGCTGTGCTCCGTTGTTCTCGAGCCG
GCGAGAACATTGCAGTGCCATCTGGATGGAATACACTGCCAGACAGCAGT
GAATTATAGCTTGCAGCAACAAAGACGCCTCCTAACTCTCTACACCCCCC
CCTCCTCCCCCCTCTCTTTCGTGTTCCCTCCTTCCGGTGTGTGCCGTTTG
TTTGTTTCTTCCTTCTGGAGCAGACTATTGAGCTGGACCAGGTGCCAGGC
GGCAGCGCCATTCAGGATGCTCTTGTGACGATCACTGGTCAGCGCTCTGT
GCCGAACGTGTTCATCGGAGGATCGGTAAGGGAGTGGATATTTTTGGATA
TTTCAGCACACACTTCTTAGTTGTTGTGTGCTCGTGTCAGGTCGATATGT
TGCCGCACGCTATCATAGATCACTTCAGGGACCAAGCAGGGCGCGGTGTT
TTCTCACTCGAGCCGAGTCCAATGTTTTGCTGCAAAACTGCATCTATTTA
GTCTACAACTCCCAACCTGCGCATGTGAAGCGGAGAGTAAACACGCTGAA
CTTTCCCAAAACTGCAAGGCTTTTGTTAGACTTCTTGACTTCTTGAGCCC
CAGCTGCCCATCCCAACGCTTTGCCTTCCTTAAGTACACCGCTCTTTTGC
TTTTCCGTTGCACTTGTTGACTTGCTTGCTCTTGCACTCGGCATGGCGTG
CAGTCCATCGGCGGAGGGGACGACACGGTCAGGTTGCAGAAGTCGGGGGA
GTTGCTCACCAAGGTCACTGCCTGCGGCGCCATTTGATTCGTTTGGTTCT
GGATTCGACGGGGATGCCCAACGTATTAGGCCTGTATATATGGTTTGAAA
TACTTCAAAGTAACAACGAAGGGGGGTGGGCCACCACGCCATGGAGGAGA
TGGAGGACAAGGCAAAGACACGGAGAGAACACCGTCGTAGATATCTGCAC
TCTGTCCGTGGGATCGCCAGAGTCCGACTGTAGGGGTAATGGCGGCGTAC
ACCATCTAAAGGATACGCACGGCATGTAATGCCTTTGCATCGTATTGTAT
CGTCCAGAAGAGATATTGCACTCCCTGCAGTCTGACGACGAGGCGGGAAC
ACGCATCAGTGCATGTAGGCCTTATTTTTTGTTGCAGCCTGTGCTCGCCG
GGTTGTACAAATGGCTGTCGAACATGTATGGGAATGATAATCTGCGCTTT
TGGCGGTTTGGTGGGGGATTGACCGGTTCAGATATATGTAGATCGAATGC
GGTTTGGATATCGTACTTACAGTATGTTGTGGCACTAAAGATTATCCACT
TTTGTACAGCTGGCGCGTGAAACTTGAGTTGATATTTTCATGCGTCTCGT
ATCTCGGCGCCTTCGTCTGGGGCAAATGGACAACCGGGAGCACCGACGCA
TACTTCGAAGTGTACATGTGAGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7209:6441..8265-

>mRNA_L-elsbetiae_contig7209.16058.1 ID=mRNA_L-elsbetiae_contig7209.16058.1|Name=mRNA_L-elsbetiae_contig7209.16058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig7209:6441..8265- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGGCAAGCACGGCGTGGTGATGTACTCCAAGTCGTACTGCCCCTA
CTGCGTCAAGGCCAAGAAGGCTTTGGACTCCATCGGGGCCAAGTACGAGA
TGGTAGGCAAGCACGGCGTGGTGATGTACTCCAAGTCGTACTGCCCCTAC
TGCGTCAAGGCCAAGAAGGCTTTGGACTCCATCGGGGCCAAGTACGAGAC
TATTGAGCTGGACCAGGTGCCAGGCGGCAGCGCCATTCAGGATGCTCTTG
TGACGATCACTGGTCAGCGCTCTGTGCCGAACGTGTTCATCGGAGGATCG
ACTATTGAGCTGGACCAGGTGCCAGGCGGCAGCGCCATTCAGGATGCTCT
TGTGACGATCACTGGTCAGCGCTCTGTGCCGAACGTGTTCATCGGAGGAT
CGTCCATCGGCGGAGGGGACGACACGGTCAGGTTGCAGAAGTCGGGGGAG
TTGCTCACCAAGGTCACTGCCTGCGGCGCCATTTGATCCATCGGCGGAGG
GGACGACACGGTCAGGTTGCAGAAGTCGGGGGAGTTGCTCACCAAGGTCA
CTGCCTGCGGCGCCATTTGA
back to top