prot_L-elsbetiae_contig7202.16049.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7202.16049.1
Unique Nameprot_L-elsbetiae_contig7202.16049.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length45
Homology
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BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.760e-7
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    2 KDVFMMRLSRRIARSGMASLREAEYLVEAGVVTVNETPVQT 42
            KD  +MRLSRRIARSG+AS REAE +VEAGVV VN   VQT
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQT 148
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BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    2 KDVFMMRLSRRIARSGMASLREAEYLVEAGVVTVNETPVQT 42
            KD  +MRLSRRIARSG+AS REAE +VEAGVV VN   VQT
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQT 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7202.16049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE1.760e-773.17S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI1.910e-773.17RNA pseudouridylate synthase domain-containing pro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 6..44
e-value: 3.3E-9
score: 37.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 7..41
e-value: 3.1E-6
score: 26.8
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 7..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7202contigL-elsbetiae_contig7202:2740..2874 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7202.16049.1mRNA_L-elsbetiae_contig7202.16049.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7202 2311..5650 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7202.16049.1 ID=prot_L-elsbetiae_contig7202.16049.1|Name=mRNA_L-elsbetiae_contig7202.16049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MKDVFMMRLSRRIARSGMASLREAEYLVEAGVVTVNETPVQTRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd