mRNA_L-elsbetiae_contig720.16047.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig720.16047.1
Unique NamemRNA_L-elsbetiae_contig720.16047.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig720.16047.1 vs. uniprot
Match: A0A8K0TT44_9PEZI (WSC domain-containing protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TT44_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 8.470e-6
Identity = 28/66 (42.42%), Postives = 34/66 (51.52%), Query Frame = 1 
Query:   13 LKTCIADAAFKTYYFA-LAEGSACYCGNP-----QPVDEERGICEEPCAGDVSSVCGGVNSYDLYE 192
            ++TCIA    + Y +A L     CYCGN       PV    G+CE PC GD S +CGG     LYE
Sbjct:  386 VETCIAFCNDRGYKYAGLEYQRECYCGNDVAADRAPVKGILGVCEMPCKGDNSQICGGYGGLSLYE 451
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BLAST of mRNA_L-elsbetiae_contig720.16047.1 vs. uniprot
Match: A0A086TF94_ACRC1 (Galactose oxidase-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086TF94_ACRC1)

HSP 1 Score: 50.8 bits (120), Expect = 1.170e-5
Identity = 24/69 (34.78%), Postives = 36/69 (52.17%), Query Frame = 1 
Query:    1 PQACLKTCIADAAFKTYYFALAEGSACYCGNPQPVDE------ERGICEEPCAGDVSSVCGGVNSYDLY 189
            P  C   C   A F     A+  G+ CYCG+P  +D       + G+C+ PCAG+ +++CGG +S   Y
Sbjct:   52 PMVCTNAC---AEFGYMAAAMGHGNICYCGDPANIDTAGAKFVDEGLCDIPCAGNGTAMCGGGSSLSTY 117
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BLAST of mRNA_L-elsbetiae_contig720.16047.1 vs. uniprot
Match: W6Q5D8_PENRF (Carbohydrate-binding WSC n=2 Tax=Penicillium roqueforti TaxID=5082 RepID=W6Q5D8_PENRF)

HSP 1 Score: 50.1 bits (118), Expect = 1.400e-5
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   58 ALAEGSACYCGNPQPVDEER---GICEEPCAGDVSSVCGGVNSYDLYEIADN 204
            AL+ G+ CYCGN  P D  +     C+ PCAG  +  CGG ++++L + A+N
Sbjct:   61 ALSRGNMCYCGNEMPPDSAKIADSKCDVPCAGWPAGSCGGADTFNLIQAAEN 112
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BLAST of mRNA_L-elsbetiae_contig720.16047.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.200e-5
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:   55 FALAEGSACYCGNPQPV----DEERGICEEPCAGDVSSVCGGVNSYDLYEIA 198
            FA+  G  C C          D + G+C+ PC GD S  CGGV+S+D+Y+++
Sbjct:  138 FAVTRGDLCTCFTEADTGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQLS 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8K0TT44_9PEZI8.470e-642.42WSC domain-containing protein n=1 Tax=Plectosphaer... [more]
A0A086TF94_ACRC11.170e-534.78Galactose oxidase-like protein n=1 Tax=Acremonium ... [more]
W6Q5D8_PENRF1.400e-540.38Carbohydrate-binding WSC n=2 Tax=Penicillium roque... [more]
A0A6H5KL41_9PHAE2.200e-538.46WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:33539..33742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.785779-CDS-L-elsbetiae_contig720:33538..337421622816801.785779-CDS-L-elsbetiae_contig720:33538..33742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 33539..33742 -
1691683824.2782884-CDS-L-elsbetiae_contig720:33538..337421691683824.2782884-CDS-L-elsbetiae_contig720:33538..33742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 33539..33742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16047.1prot_L-elsbetiae_contig720.16047.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig720 33539..33742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig720.16047.1

>prot_L-elsbetiae_contig720.16047.1 ID=prot_L-elsbetiae_contig720.16047.1|Name=mRNA_L-elsbetiae_contig720.16047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
PQACLKTCIADAAFKTYYFALAEGSACYCGNPQPVDEERGICEEPCAGDV
SSVCGGVNSYDLYEIADN
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mRNA from alignment at L-elsbetiae_contig720:33539..33742-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig720.16047.1 ID=mRNA_L-elsbetiae_contig720.16047.1|Name=mRNA_L-elsbetiae_contig720.16047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=204bp|location=Sequence derived from alignment at L-elsbetiae_contig720:33539..33742- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCTTCAAGACGTA
CTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCCCAAC
CCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTA
TCCTCGGTGTGCGGAGGTGTCAACTCTTACGACCTGTACGAGATAGCCGA
TAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig720:33539..33742-

>mRNA_L-elsbetiae_contig720.16047.1 ID=mRNA_L-elsbetiae_contig720.16047.1|Name=mRNA_L-elsbetiae_contig720.16047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig720:33539..33742- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCTTCAAGACGTA
CTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCCCAAC
CCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTA
TCCTCGGTGTGCGGAGGTGTCAACTCTTACGACCTGTACGAGATAGCCGA
TAATCCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCTTCAAGA
CGTACTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGGAACCCC
CAACCCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGA
TGTATCCTCGGTGTGCGGAGGTGTCAACTCTTACGACCTGTACGAGATAG
CCGATAAT
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