prot_L-elsbetiae_contig720.16045.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig720.16045.1
Unique Nameprot_L-elsbetiae_contig720.16045.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length380
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.320e-20
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0 
Query:  160 SKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAYDKYAKMWIKNPELNFPRVTTNSRVRG 226
            SKYLGVRK+GSRW A+I RPSVG E +LGVF E+VDAAK YDKYA MW+K PE+NFPR  + SR RG
Sbjct: 1439 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYANMWLKTPEVNFPRGRSASRFRG 1505
[Close]
BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.470e-11
Identity = 65/194 (33.51%), Postives = 80/194 (41.24%), Query Frame = 0 
Query:  160 SKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAYDKYAKMWIKNPELNFPRVTTNSRVRGIAAATATANTGRGXXXXXXXXXXXXXXXXTSALDVERKEKEDDKKGDKQERDGGKISVKDVGGTERGGKKGENQEGGKEKEADPMVVDQAEDQDKREEVTEKAVAPVPLDGLLLVQYLWGRGPGGFG 353
            SKYLGVRK+GSRW A+I RPSVG E +LGVF E+VDAAK YDKYA              T  S  +     TA A                                                     GG  + G++G           D M V++  ++ + +E  E       LDG+LLVQYLW RG GGFG
Sbjct: 1096 SKYLGVRKQGSRWVAYIIRPSVGGETNLGVFDEEVDAAKQYDKYAN------------TTGGSGKKPPTRMTAAAG----------------------------------------------------GGVRQDGEEG-----------DGMDVEEGVEKVEEDEEAEL------LDGVLLVQYLWARGRGGFG 1208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16045.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE3.320e-2071.64CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6J0_ECTSI2.470e-1133.51CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 161..222
e-value: 3.1E-4
score: 22.8
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 160..218
e-value: 9.0E-8
score: 33.8
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 160..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:18946..22161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16045.1mRNA_L-elsbetiae_contig720.16045.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig720 18946..22163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig720.16045.1 ID=prot_L-elsbetiae_contig720.16045.1|Name=mRNA_L-elsbetiae_contig720.16045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp
AAAAAAAAATAAEGGAREARLPETAAAAPAATAAAREEARGGVKISKEKE
NSAKGGAGAGAAAGVAAAASTTKKPAVAQVGGDLRAAGGRGGAKGSEEKE
SSARDGAGAAAGAGATAASVPKKPAVAEPGSELRAAGARGSGEKEKGKAT
GKGGGSRAGSKYLGVRKEGSRWAAFITRPSVGVEKHLGVFVEDVDAAKAY
DKYAKMWIKNPELNFPRVTTNSRVRGIAAATATANTGRGTTGGSDGGGDK
GGGGKTSALDVERKEKEDDKKGDKQERDGGKISVKDVGGTERGGKKGENQ
EGGKEKEADPMVVDQAEDQDKREEVTEKAVAPVPLDGLLLVQYLWGRGPG
GFGGEPASAAASAAAAAASDVGAAVASLTP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf