prot_L-elsbetiae_contig72.16040.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig72.16040.1
Unique Nameprot_L-elsbetiae_contig72.16040.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length154
Homology
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 8.570e-80
Identity = 129/154 (83.77%), Postives = 140/154 (90.91%), Query Frame = 0
Query:    1 MSTSLRRTSALLRPLVTAQARQLHSSVPK-GSVSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSEK 153
            MS SL+R+SALLRP+VTA  R+LHSSVPK  S  GS +VLNADDGKLGTKLYHAVNMVVLAGVPAA+ATSPSALTMPLD+VLGIA+PLHAHIGMNYVISDYVPKS+RG ARGAMLAASV+A LGLLKLNLTGAGLTETLKATWR PKP E+  K
Sbjct:    1 MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEEGAK 154          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.330e-33
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 0
Query:   37 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAE 149
            +++ AD G +GTK YH  N  +L   P A+  SPS LT PLD+ LG+A P+H HIG+NY+ISDYVP++SR  AR  +L A+ V  LGLLKLNL+G GLTET K+ WR  K  E
Sbjct:   52 SLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.250e-31
Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = 0
Query:    2 STSLRRTSALLRPLVTAQARQLHSSVP-----KGSVSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKS 151
            ST++RRT+A        Q R      P       + +G   VLNAD+ K  +K+ H  +  +LA VPAA+  SPSAL +P+D +L + +P+H+HIG+N V+SDYVPK+ +  AR  +L AS+V  LGL+ LN+TGAG+TET+K+ WR+P   E S
Sbjct:    7 STAVRRTAA-------TQTRGFRKGNPTKFTENKADTGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSKEVS 154          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.820e-30
Identity = 61/132 (46.21%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   21 RQLHSSVPKGSVSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSE 152
            RQ+H S  + +  G+ +V+NAD GKLGT ++H +N  +LA +P  +  +P+ +  P++++L +A PLHAH+ MNYVISDYVP+ ++  AR AML  + VA+LGL+KL+LTG GL  T+ A W+ P   E  E
Sbjct:   22 RQVHGS--RKARKGAVDVVNADVGKLGTSMFHYLNYGLLAALPVLL-VAPTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKLSLTGPGLVSTVGALWKKPAKEEAKE 150          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A2D4BN75_PYTIN (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN75_PYTIN)

HSP 1 Score: 115 bits (288), Expect = 7.280e-30
Identity = 64/120 (53.33%), Postives = 80/120 (66.67%), Query Frame = 0
Query:   32 VSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWR-DPKPAEK 150
            VSG   VL AD+     K+YH  ++ +L  VPAA   SPS L++P+D  LG+ +P+HAHIGMN VISDYVPK+ R  AR A L  + V  LG+L+ N+ G GLTETLK  WR DPK A K
Sbjct:   40 VSGLAGVLEADNATFSHKVYHLSSLALLGLVPAAFVLSPSVLSVPVDYALGVIIPVHAHIGMNNVISDYVPKAHRTLARLAWLGVTGVMFLGILRNNIEGPGLTETLKTFWREDPKKAAK 159          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A6G0X8T0_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8T0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.400e-29
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   33 SGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKSE 152
            +G   VLNAD+    TK  H  ++ +LA VP A+  SPSAL +P+D  L   +P+H HIG+N V+SDY+PK+ +G  R A+L  SVV  +GLL LN+TGAG+TE++KA W +P P++K E
Sbjct:   35 TGVNAVLNADNSVYTTKAMHLTSLALLALVPTAVVLSPSALNVPVDYALAALIPIHGHIGLNGVLSDYLPKNVQGLGRVAVLGVSVVTFVGLLSLNITGAGITESVKAIWIEP-PSKKEE 153          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: F0WYT9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYT9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.300e-28
Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 0
Query:   12 LRPLVTAQARQLHSSVPKGS---------------------VSGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEK 150
            LR L T  +R + SS P  S                      SG   ++ AD+    TKLYH  ++ +LA  P A A SPS L+MPLD  + I +P+HAHIGMN VISDY+PK  +   R A L A+ +  LGL++LN+ G G+TET+K  WR PK + K
Sbjct:   12 LRSLPTVNSRTIQSSTPHHSSLLTTSLYPLGTASKYIENKEASGLAGIVQADNAVGYTKLYHFTSVGLLAVTPCAFALSPSTLSMPLDWAMSILIPVHAHIGMNNVISDYIPKPQQPVIRLAWLGAAGLMCLGLIRLNVEGPGITETIKTFWRQPKSSLK 171          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.440e-28
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 0
Query:   37 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEK 150
            N++ AD      KL+H  N+ V+   P AI   PS L+MP+DV L I  PLHAH+GMN + +DYVP S  G AR A+LA SV++ +GLLKL ++  G+T TLKA W++PK  EK
Sbjct:   38 NLVGADQTLSQAKLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKLAVSEDGITGTLKAVWKEPKKEEK 151          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.380e-28
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 0
Query:   37 NVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPK----SSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWR 143
            N L AD+G + TKLYH +NM +L   P A    PS +T PLD+ LG+ +PLH HIGMNYVI+DYVPK    ++RG AR  ML  + V   GL  LNLTG G+T T+K  W+
Sbjct:   31 NFLAADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGLTHLNLTGKGITATIKGLWQ 141          
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Match: A0A024TJC8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJC8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.420e-28
Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 0
Query:   33 SGSTNVLNADDGKLGTKLYHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDYVPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEKS 151
            +G   VLNAD+ K  +K+ H  +  +LA VPAA+  SPSAL  P+D +L + +P+H+HIG+N  +SDYVPK+ +   R  +L  SVV  LGL+ LN+TGAG+TET+K+ WR+P P++K+
Sbjct:   78 TGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNTPVDNLLAVLIPVHSHIGINNAVSDYVPKNFQKLVRTGVLGVSVVTFLGLITLNVTGAGVTETVKSLWREP-PSKKA 195          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI8.570e-8083.77Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA1.330e-3354.87Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W4GD77_9STRA5.250e-3144.52Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA2.820e-3046.21Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A2D4BN75_PYTIN7.280e-3053.33Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A6G0X8T0_9STRA3.400e-2949.17Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
F0WYT9_9STRA2.300e-2841.88Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA2.440e-2850.00Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S2WU59_9STRA5.380e-2852.25Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A024TJC8_9STRA8.420e-2848.74Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05328CybScoord: 52..142
e-value: 6.5E-13
score: 48.5
NoneNo IPR availablePANTHERPTHR13337:SF2SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIALcoord: 17..143
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 74..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..73
NoneNo IPR availableTMHMMTMhelixcoord: 50..69
NoneNo IPR availableTMHMMTMhelixcoord: 111..133
NoneNo IPR availableTMHMMTMhelixcoord: 79..98
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 44..143
e-value: 1.8E-18
score: 68.4
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 63..121
IPR007992Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybSPANTHERPTHR13337SUCCINATE DEHYDROGENASEcoord: 17..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig72contigL-elsbetiae_contig72:55492..58210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig72.16040.1mRNA_L-elsbetiae_contig72.16040.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig72 55438..58210 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig72.16040.1 ID=prot_L-elsbetiae_contig72.16040.1|Name=mRNA_L-elsbetiae_contig72.16040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MSTSLRRTSALLRPLVTAQARQLHSSVPKGSVSGSTNVLNADDGKLGTKL
YHAVNMVVLAGVPAAIATSPSALTMPLDVVLGIALPLHAHIGMNYVISDY
VPKSSRGTARGAMLAASVVAALGLLKLNLTGAGLTETLKATWRDPKPAEK
SEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR007992CybS