mRNA_L-elsbetiae_contig72.16037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig72.16037.1
Unique NamemRNA_L-elsbetiae_contig72.16037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: D7FNE3_ECTSI (Similar to zinc finger CCCH-type containing 12C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE3_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.080e-41
Identity = 86/169 (50.89%), Postives = 116/169 (68.64%), Query Frame = 3 
Query: 1278 SATPGIPPLVVIDGSNTAFAYREGG---GRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPEAHVIKELTRHATDKR 1775
            SA+PG   LV IDGSN AFA+ +G     RW   GP  AIQ+F+ RG+  V F+P  R+ ++   D+ YP F+EA  SG I  VPA  NDDL+ L+YAI + A VVSND+FRDH+ +  TLA LG + AEL+ +L+ HQV YTFAR EF+P+PEA++I+ +T+   +KR
Sbjct:  391 SASPGTT-LVAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQFFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDDLFILRYAIGKKAYVVSNDQFRDHARSSQTLAALGLNAAELQAFLAQHQVCYTFARAEFIPDPEANLIRMITQQEAEKR 558
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: D7FTY5_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 6.650e-37
Identity = 81/156 (51.92%), Postives = 104/156 (66.67%), Query Frame = 3 
Query: 1299 PLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPEAHVIKELTRHAT 1766
            PLVVIDG++ A  Y     RW A  PLLAIQ+F++RGV  VAF+PR RV  V P+DD Y AF EAR+  AIS +P G N  L+ LK+AI+ NA VV+N +   H A+  TLA LG+++ EL  YLS   V YTFA D+F P+PEA +IK   + A+
Sbjct:  649 PLVVIDGTDIALTYWRTDDRWSALQPLLAIQFFKERGVPCVAFLPRERVYGVTPQDDFYTAFHEARSRRAISEIPQGANASLFILKHAIENNAYVVTNAQLSGHIASPATLASLGQTKNELHSYLSRSHVRYTFAGDDFTPDPEAPLIKMFAKQAS 804
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.740e-35
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 3 
Query: 1296 PPLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPEAHVIKELTRHA 1763
            P  VVIDG++ A  +R   G+W A+G LLAIQ+FE RGV  VAF+PR R+  V P D    AFQEARA GAI+ +P G   DL  LKYAI+    VV+N +   H+ +++ LA LG+++ +LR+YLS + V YTF R++F PNPE   I+ L   A
Sbjct:  661 PKKVVIDGNDVALCHRGAHGQWSAQGALLAIQFFERRGVPCVAFLPRERMAGVSPRDGCNTAFQEARAKGAINEIPRGEKADLSILKYAIESKVHVVTNKKLSTHATSNEALAFLGQTKQDLREYLSHYHVCYTFVRNDFKPNPETPFIRMLLNQA 816
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: A0A6H5KJR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.030e-26
Identity = 79/212 (37.26%), Postives = 103/212 (48.58%), Query Frame = 3 
Query: 1299 PLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPED--------------------------------------------------------DVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPEAHVIKELTRHAT 1766
            PLVV+DG++ A  Y     RW A  PLLAIQ+F++ GV  VAF+PR RV SV  +D                                                        D Y AF EAR+  AIS +P G N  L+ LK AI+ NA VV+N +   H A+  TLA LG+++ EL+ YLS   V YTFA D+F P+PEA +IK   + A+
Sbjct:  604 PLVVLDGTDIALTYWRTDDRWSALQPLLAIQFFKEWGVPCVAFLPRERVCSVTLQDGGSPTSFEGGFLRSDLVHKDMRRPVVGVRAGSYSLLTFGMPRPNPFNPVGSSPLVTDFYTAFHEARSRRAISEIPQGANASLFILKRAIEHNAYVVTNAKLSGHIASPATLASLGQTKNELQSYLSRSHVRYTFAGDDFTPDPEAPLIKMFAKQAS 815
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: D7FTX8_ECTSI (RNase NYN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.580e-25
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 3 
Query: 1296 PPLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTL 1631
            P  VVIDG++ A  +R   G+W A+GPLLAIQ+FE RGV  VAF+PR R+  V P D    AFQEARA GAIS +P G   DL+ LKYAI+    VV+N R   H+A+++TL
Sbjct:  673 PKKVVIDGNDVALCHRGADGQWSAQGPLLAIQFFEQRGVPCVAFLPRERMAGVSPRDGCNTAFQEARAKGAISEIPRGEKGDLFILKYAIESKVHVVTNKRLSTHAASNETL 784
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: R7Q260_CHOCR (RNase NYN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q260_CHOCR)

HSP 1 Score: 89.0 bits (219), Expect = 9.250e-15
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 3 
Query: 1299 PLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDS---VRP-------EDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNP 1727
            P V+IDG N    Y E    + + G  LA+ Y+   G++++A +PR +VD    +RP        DD      E  + G +   PAG +DD + L+YA+ + A V+SNDRF       +T   +     ++R +L  H + YTF   +FVPNP
Sbjct:  472 PTVIIDGQNVGRDYGENDHIFQSRGVKLALDYYAANGIRALALLPRNKVDQRTYLRPGVRNTLVADDPE-LLNELHSQGRVYFTPAGSHDDFFILRYAMRKEADVISNDRFIKELEMQETAEDV----RDMRTFLETHLIPYTFIGQDFVPNP 619
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: UPI000644C6F7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C6F7)

HSP 1 Score: 87.4 bits (215), Expect = 3.550e-14
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 3 
Query: 1299 PLVVIDGSNTAFAYREGGGRWFAEGPLL-AIQYFEDRGVKSVAFIP------RP-------RVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPE 1730
            P++VIDG N A  Y  G  + F+   +  AI+Y+  RG + + F+P      +P       R+   +P  D    F E    G + M P    DD Y ++YA    A +V+NDR+ DH    +T A     R + R ++  H +S+TFAR EF+PNP+
Sbjct:  647 PMIVIDGPNVALKY--GNSKTFSVLAIKKAIEYYSQRGFEVITFVPEHVATRKPSGPNAPMRITDFQPFVDDMKMFNELVEKGLVCMTPPQDYDDSYAIQYAKKHGAMIVTNDRYNDHINKQETEA----ERQKARRFIREHCISFTFARHEFLPNPD 798
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: D3B617_POLPP (RNase NYN domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B617_POLPP)

HSP 1 Score: 83.2 bits (204), Expect = 8.280e-13
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 3 
Query: 1302 LVVIDGSNTAFAYREGGGRWFAEGPLL-AIQYFEDRGVKSVAFIPRP-------------RVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPE 1730
            LVVIDG N A  Y  G    F+   +  A+ Y+  RG ++VAF+P               ++   +P  D +  FQE  A   + + P    DD Y ++YA   NA +V+NDR+ DH    +T A     R + R ++  H +S+TF R EF+PNP+
Sbjct:  785 LVVIDGPNVALKY--GKKNCFSVIAIKKALDYYIQRGYEAVAFVPESVASRKPTGPNAPMKLLDFQPVVDNFAMFQELVARELVCLTPPQDYDDSYAIQYAKKHNAIIVTNDRYNDHINKQETDA----ERQKARKFIREHCISFTFVRQEFLPNPD 935
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: A0A8J4PVQ7_9MYCE (RNase NYN domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVQ7_9MYCE)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-12
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = 3 
Query: 1305 VVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPRPRVDSVRPED--------------DVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPE 1730
            +VIDG N A  Y     ++   G   A+ Y++ RG + VAF+P          D              D   AFQ+   SG +S+ PA   DD+Y + YA   NA +V+NDR+     ND         + ++R ++  H +S+TF RDEF+PNP+
Sbjct:  764 IVIDGPNVAKKYGTK-KKFSVMGLKKALDYYDQRGYEVVAFVPESYASRKNHHDPKKNFTLFEYQDVADDLVAFQKLTESGKVSLTPAQDYDDIYTIHYARMHNACIVTNDRY-----NDIIDKCQESEKQKIRKFIRDHCISFTFVRDEFLPNPD 913
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Match: A0A7J6SE35_PEROL (RNase NYN domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SE35_PEROL)

HSP 1 Score: 79.3 bits (194), Expect = 5.000e-12
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 3 
Query: 1299 PLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIP----------------RPRVDSVR---------PEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVVSNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPE 1730
            PL++IDG N A   R GG ++  +G  + + Y+  RG + + F+P                + +V +V          P D++     + +  G +++ P+   DD Y L+YA+ ++A +VSND +RD          L   ++E   +L  H VSYTF +DEF+PNP+
Sbjct:  246 PLILIDGPNVA--NRHGGQQFTCKGLQICVDYYTSRGHEVMVFLPDYLVNRNELFRLRNAQKMKVQTVHGIKAAPTHIPVDNIG-ILLKLQTQGRLALTPSKDYDDSYCLQYALKKDAVIVSNDMYRDW-----VKKQLSWKKSESIQWLRTHVVSYTFVKDEFMPNPD 406
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE3_ECTSI1.080e-4150.89Similar to zinc finger CCCH-type containing 12C n=... [more]
D7FTY5_ECTSI6.650e-3751.92RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KK30_9PHAE1.740e-3548.72RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJR8_9PHAE3.030e-2637.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTX8_ECTSI1.580e-2553.57RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
R7Q260_CHOCR9.250e-1533.33RNase NYN domain-containing protein n=1 Tax=Chondr... [more]
UPI000644C6F73.550e-1433.54hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B617_POLPP8.280e-1333.76RNase NYN domain-containing protein n=1 Tax=Polysp... [more]
A0A8J4PVQ7_9MYCE1.420e-1232.69RNase NYN domain-containing protein n=1 Tax=Polysp... [more]
A0A7J6SE35_PEROL5.000e-1229.59RNase NYN domain-containing protein n=1 Tax=Perkin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig72contigL-elsbetiae_contig72:38015..43106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue2.3e-39
Seed eggNOG ortholog2880.D7FNE3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRibonuclease domain protein
Ec32 orthologEc-22_001400.1
Exons7
Model size1910
Cds size1461
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.4643216-UTR-L-elsbetiae_contig72:38014..384001622816800.4643216-UTR-L-elsbetiae_contig72:38014..38400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig72 38015..38400 +
1691683823.3236382-UTR-L-elsbetiae_contig72:38014..384001691683823.3236382-UTR-L-elsbetiae_contig72:38014..38400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig72 38015..38400 +
1622816800.5517962-UTR-L-elsbetiae_contig72:43043..431061622816800.5517962-UTR-L-elsbetiae_contig72:43043..43106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig72 43044..43106 +
1691683823.4297884-UTR-L-elsbetiae_contig72:43043..431061691683823.4297884-UTR-L-elsbetiae_contig72:43043..43106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig72 43044..43106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.4765797-CDS-L-elsbetiae_contig72:38400..388861622816800.4765797-CDS-L-elsbetiae_contig72:38400..38886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 38401..38886 +
1691683823.33862-CDS-L-elsbetiae_contig72:38400..388861691683823.33862-CDS-L-elsbetiae_contig72:38400..38886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 38401..38886 +
1622816800.4871075-CDS-L-elsbetiae_contig72:39566..400851622816800.4871075-CDS-L-elsbetiae_contig72:39566..40085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 39567..40085 +
1691683823.3597593-CDS-L-elsbetiae_contig72:39566..400851691683823.3597593-CDS-L-elsbetiae_contig72:39566..40085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 39567..40085 +
1622816800.4979424-CDS-L-elsbetiae_contig72:40572..406481622816800.4979424-CDS-L-elsbetiae_contig72:40572..40648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 40573..40648 +
1691683823.3716488-CDS-L-elsbetiae_contig72:40572..406481691683823.3716488-CDS-L-elsbetiae_contig72:40572..40648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 40573..40648 +
1622816800.5076268-CDS-L-elsbetiae_contig72:41297..413851622816800.5076268-CDS-L-elsbetiae_contig72:41297..41385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 41298..41385 +
1691683823.3817246-CDS-L-elsbetiae_contig72:41297..413851691683823.3817246-CDS-L-elsbetiae_contig72:41297..41385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 41298..41385 +
1622816800.516981-CDS-L-elsbetiae_contig72:41835..419121622816800.516981-CDS-L-elsbetiae_contig72:41835..41912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 41836..41912 +
1691683823.3961594-CDS-L-elsbetiae_contig72:41835..419121691683823.3961594-CDS-L-elsbetiae_contig72:41835..41912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 41836..41912 +
1622816800.526607-CDS-L-elsbetiae_contig72:42399..425121622816800.526607-CDS-L-elsbetiae_contig72:42399..42512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 42400..42512 +
1691683823.4083323-CDS-L-elsbetiae_contig72:42399..425121691683823.4083323-CDS-L-elsbetiae_contig72:42399..42512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 42400..42512 +
1622816800.5399036-CDS-L-elsbetiae_contig72:42941..430431622816800.5399036-CDS-L-elsbetiae_contig72:42941..43043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 42942..43043 +
1691683823.41814-CDS-L-elsbetiae_contig72:42941..430431691683823.41814-CDS-L-elsbetiae_contig72:42941..43043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig72 42942..43043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig72.16037.1prot_L-elsbetiae_contig72.16037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig72 38401..43043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig72.16037.1

>prot_L-elsbetiae_contig72.16037.1 ID=prot_L-elsbetiae_contig72.16037.1|Name=mRNA_L-elsbetiae_contig72.16037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=487bp
MSWLPWPPLWPPGLNSSSPQPSADTGKHANLLEAPPAVPPPAAAGSPAAA
GSWDFASGGGWSVACRVGHQHQEASATASSGQFSQSSRPKRKREEEPTVA
RASGAEINQQSAASERNLASMDSMMDVDDGAAGGVGTDAGRVSKKSREAA
PGPDSSPPQPPQSWTRGKFRITHHSAVPGENGPLFSPGKRPLAPAAGERR
WRGGTRKDNNRSLLRGPPPPPGRASRLSSAAAGRSRFSPAAGPSSSSSSS
SRFSFGASSSSKFSFGASSSSSSRFSFGEKGAAAFSATNTDDGDGSNSAT
PGIPPLVVIDGSNTAFAYREGGGRWFAEGPLLAIQYFEDRGVKSVAFIPR
PRVDSVRPEDDVYPAFQEARASGAISMVPAGGNDDLYFLKYAIDRNAPVV
SNDRFRDHSANDDTLAMLGRSRAELRDYLSGHQVSYTFARDEFVPNPEAH
VIKELTRHATDKRARPSCEARGAPSSHPSPEPPWPA*
back to top

mRNA from alignment at L-elsbetiae_contig72:38015..43106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig72.16037.1 ID=mRNA_L-elsbetiae_contig72.16037.1|Name=mRNA_L-elsbetiae_contig72.16037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5092bp|location=Sequence derived from alignment at L-elsbetiae_contig72:38015..43106+ (Laminarionema elsbetiae ELsaHSoW15)
CACACAGCCTGCATTGAAACCAGAAAAGCCCACCCTGCCCAGGGCGTTAC
ATTGCTCTGTCCCTTCAGACCAATCTCCTGCAACGCGTGCGAGACGGTTG
CGCGGAACAGGACTCAATACAACAAGCGCTCCACTCCCCTGGGGGGGATC
CCTGAGAGATTGACCACACCTCCGCCTTCCGGGACCCCACTACATGAACG
GGCAAGCAGCGGGGCGAAGCACGGCTGCGAACTCTCGCCAATCTATCGGG
TTGAAAGCACGGTCGACAAGCGACTCACCCGGGCCGGCGAACTCCTAGAG
GTGGCACCGCTTTTAGCAAGACAAAGCAAATATCTACAGTAGACGGGACT
GTAGGGACTGCTGTGTGTATAAAGCGGCGCTACATCATGTCTTGGCTCCC
TTGGCCTCCTCTTTGGCCCCCTGGGTTGAACTCGTCTTCTCCCCAACCGA
GTGCTGACACTGGCAAGCATGCCAACCTTCTTGAGGCCCCCCCGGCAGTG
CCGCCACCCGCTGCGGCGGGTTCACCCGCTGCGGCGGGTTCATGGGACTT
CGCTTCGGGAGGAGGATGGTCGGTAGCATGCCGGGTTGGTCACCAACACC
AGGAGGCATCAGCAACAGCAAGCTCCGGGCAGTTCAGCCAGTCTTCGCGG
CCGAAAAGAAAACGGGAAGAGGAGCCAACGGTGGCTCGGGCGAGCGGCGC
AGAGATCAACCAGCAGAGCGCTGCTTCGGAACGAAATCTAGCGAGCATGG
ACAGCATGATGGACGTGGACGACGGGGCGGCCGGTGGAGTTGGCACAGAT
GCCGGGCGTGTTTCGAAGAAGAGCCGTGAGGCTGCTCCCGGGCCCGACAG
TAGCCCGCCGCAGCCGCCGCAGGTAACTGTGACTTGTGACTTGTGCATAC
ATACCTTGGAGTATATACGATTCAAAAATCATGGGCGGCATTGTCGAGCA
ATTACAGATACAGCAGCAGCTGGTTGAGCAGCAGGTAGGTGTAGATTATA
CGCAGTAGGTGTTTATTATGTCGTTGCATTGATCGTCTTCAGGGATAGTC
TAGATGGAAGAGTTGACATGAAATTGACGTTTTGGGGCACTGGACAGAGG
TGTGGGTTGTTCCGTGGAACCGGTGCTGAAAAAGCAATCATGCACATGTT
GTATTGTAGGAGCTCCTTAAAATCGATTGTCGGTTGTTGTTTGTTGTTTT
GACGCTTTGGAGACATGCCATCGAAAAGGTCTGTCCGCTCGTGGTCTGAA
GCCAGGGCATGAAAACATGCCACAGGGAGAGACACACACGGCACGGAAAC
ATGCACAGGGTACCCCTGGAGCCCGCTGGGGGGATGATATTTTTCCCTTG
CTCTGACTGATCCACAAGGCGACCTCGCATCCTAAAAGACAATTCGTGAC
GCTTCAGTCCGTTTGTTGTCTTTGCCGTGCATGTTTTTTTTTTCGATCAC
AACAACGCGCTCCAAGCCCTTACTGTAGCCCTCCCCGCATCCACTGCTGT
TTTTCGTGCTCCCCCGCCTGGTGGATTTTTCTCTCTCCTTGTGCGGTGCC
AGAGCTGGACTAGGGGAAAGTTTCGTATCACGCACCACAGCGCGGTTCCA
GGCGAAAACGGGCCGCTGTTTTCTCCCGGAAAGAGGCCGCTTGCCCCCGC
CGCTGGCGAACGGCGCTGGCGCGGTGGCACGAGGAAGGACAACAACCGGT
CGCTGCTGCGCGGGCCGCCGCCGCCGCCCGGCCGTGCCTCGCGCCTCTCT
TCTGCCGCGGCAGGTCGTTCGCGTTTTTCACCTGCCGCCGGCCCAAGCAG
CAGCAGCAGCAGCAGCAGCAGGTTTTCTTTTGGGGCAAGCAGCAGCAGCA
AGTTTTCTTTCGGGGCAAGTAGCAGCAGCAGCAGCAGATTTTCTTTTGGG
GAGAAGGGGGCGGCTGCTTTTTCTGCGACCAACACCGACGACGGCGACGG
CAGCAACAGTGCCACGCCGGGCATCCCTCCCCTCGTGGTGATAGACGGGA
GCAACACCGCGTTCGCCTACCGAGAAGGAGGCGGTCGGTGGTTCGCTGAG
GGGCCGTTGCTTGCTATCCAGGTGCGTGTCTGCCTGCCTGCCTGCCTGCC
TGCCTCGACCGGCCGTATGTGTGTGAGGGAAAAATTGTGTGTGTTTGTGT
TTGTGTGCTCGAGGCTTGGTCATCATGCCGTTTCCGCATGAAGCGCTGCT
TTGTGTTGTGGCCGCATGAACTAATTCGTTTGGTTCTGCTGCCCATCGAC
CTCTCGAAAGAACGACAAAACTGCAGCTTCGCATGCGTTTCAGGCTCTTG
TCGCCCAGGCATAATTATTGCTTGATTCGATTCGTGCTACCCGCGGGACC
GTAAATGGCACACATAAATATGTAGCTGTTGCATTTCCTACAACGTGTTG
ACCAAGATTGAAACAGCATATTCTACCACCCTCCTGACAAGTAGTTGTCT
GGCTCCACCGACCATCTACACGCAAACGAATCAAAATCGCCGTCAAGTAA
GGAATTCCGACCTCGACATCCGCCCGGATCTGTCGTCTTTGCAAAATTGA
CAAAACAGTACTTCGAAGACCGCGGAGTAAAAAGCGTCGCCTTCATTCCT
CGCCCGCGCGTCGACAGTGTCAGGCCCGAAGATGGTAAGTCATGTGTGTT
TCGGTTCACAGCGAGCCACGTGCGTGTGGGTAGCGTAGCGTGGGGGCGGG
TGGGGGGCGTGAGGAGGGAGTGGTGTGCGTGTGTGCTAGTGAAGGGTAGT
ATCAGCAGCATAGGTAACAAGAGGCAGATACATCGGAGTTACCAAGTGCT
ACATACTTGTATTTACGCCCGTGACGTGACGTGGTGTGATGTGATTTTTG
GCGACAGGGGGCTCTGTTTTTATAAATACGGCCCATCGAAATGCTGCTGG
TGCTTCTGTGTGCAGCGTGCATGGCCTTACCGCGGCCTGGGGCGAAATGT
GTGTCTTTTGCGGCTGCAAGGGGCATGCAGAGATTTTGGCTGGACGTACA
TCGTTGTTTAGTTTTTTTTCTTCAGGGTTGCCACAAACCTATTCCAGGCG
TACGCAGGGACATATGTACTTCAGGATTTCGCCGACGAGGCCACACGAAA
CGAAATATAAGGCGATCAGCCGATATCATCCATGGTTCAACAGCCCCCCG
CCCCCCCCCCTCCCTTCACGTGGGGGGGTGCGGGCAGCATCAGAAGTCCG
AACCACAGGACCCGTCTCATTCCACGGCGTGTGCGCCATGTGCTGCTCCT
CTCTACCCGCCCCGTCTCTCGCCGTCATTATAGATGTGTACCCCGCATTC
CAGGAAGCAAGGGCCAGCGGGGCGATCTCCATGGTCCCAGCAGGGGGAAA
CGACGACTTGTACTTCCTCAAGTGAGTTATGCCAGAGCTGGCATGAACTG
CTCTCCTCGCAATTCCGCCGCGAACGCGTGGGGTTTCAGGAGAAATTCGT
TGTCCACACTTGTTTACAATCGGGGTGAGAAGTTGGGTTCGACGCCGTCG
AAAACCAATCGCAGGTGTGCGCGTGTGTGTGTTTGCAGCTATTTCACCGG
GCCATGAAGGGGGTTCAATGGCTAGACTAGCAAAGCGTCGGAAGGGTGTT
GGCACTAATGAACACCGGTCACGAGTGAGTTGTTGTTTTTATACAAGGGT
GTATACCGGGAAAAGTATGGAACTCAGTCCAATCATCGATTTTTTGCAAA
AACCAAGAAAGCATGTCTTGGAGCAGTCCCGTGGCCAGGGCAGCAGAGTG
CGCCCTATTTTAGATGCTGCTGGCCTGACCTGTGTGTTTGTGTGCGCGCG
TCCATTCCCTTTTCGCCGCAGGTACGCCATCGATCGTAATGCACCTGTGG
TGAGCAACGACCGTTTTCGCGATCACTCCGCCAACGACGACACATTAGGT
TCGTGTGTGTACTTGTGGCTAATCTACTCGGAAGTGCGCTATCGTTCTAT
GTGAGCGGCGATGTTTGATGGTTCGCATGCGATATCTGCTGATGATGCAT
GGGGAACAAAAGCCCTGCCGCGTTATTTGCTCTTGTTGCCTTAATAGGCA
GACAAAGGCTCGTATTGGCTTGTGTTGTCCTATTTAATCACATGGATGGC
CGAAGTGCTATATGGTGTTTTTGCCTCTCACGCAACGACGAGGTGTTGAA
TGCCTTGCGTGTATACACTAGAGACTAAAGCGATAAGTTGCATGTTTGGG
CTGTGGTTCAAAGCGTGAGCCGGCCCGTGTTATGAAGTGCTTGTGAAATG
GAGAAGAAAAAGGAGCAACCAACACGTGCGACAATATTGTTCACCGCGTG
CTGAAGCAGCGTTATGAGACTCATTCATGGACAAGCATACCTTAGCCTGT
ACTGCTGCTGCTGCGGTTTCCCCGCATTTTCGCAGCTATGTTGGGGCGAA
GCAGGGCAGAGCTACGGGATTATCTTTCGGGGCACCAAGTGAGCTATACG
TTCGCGCGAGACGAGTTCGTGCCCAACCCAGAAGCGCATGTCATCAAGGT
AGGCCCCTCTTCATTTGTATGCCGAGCAGCAGCAGCAGCGTGGCGGTCGG
CGGCTGTGGCAACGGCGGGGGCTGTGGTGTAGTGCGCAGCGCAAAAAGGA
AGACGGGCTGACACCCGGCAGCTGCTTCATGTTTCCTCTGCAGTCTAAGC
TGCGATGCTGATGTCTTGAAGGGCGTAATGTACTACAAGACGCGGGGTAC
TCTTTTGTTCGCCCATCCCACTCTACTTGTTTGGAGGCCGTTTTCTGAAG
CCTTTTTTTGTTAGGCAAAGGTTTTGTAGTTGGCGCTCGCCACACGCTCT
ATCCCCGGCAGCATTGCAGATATACTTACACAATCTTATCAGCCAAACAC
CGCGCTGACATCCCCACGCACTTCACACTCACCCAACCGGCCGACCGACT
ATCTTGCCTGCGGCTATTGCTTGCCAGGAACTCACACGGCACGCAACGGA
CAAGAGAGCGAGGCCGTCGTGCGAAGCGAGGGGAGCGCCCAGCAGCCACC
CTTCTCCTGAACCCCCCTGGCCGGCTTGAGAGCGAGCGCGACAGCCAGCC
ACCCTCCCTACTCCTGCTTGCAGCACGCGAACGGTACGCGCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig72:38015..43106+

>mRNA_L-elsbetiae_contig72.16037.1 ID=mRNA_L-elsbetiae_contig72.16037.1|Name=mRNA_L-elsbetiae_contig72.16037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2922bp|location=Sequence derived from alignment at L-elsbetiae_contig72:38015..43106+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTGGCTCCCTTGGCCTCCTCTTTGGCCCCCTGGGTTGAACTCGTC
TTCTCCCCAACCGAGTGCTGACACTGGCAAGCATGCCAACCTTCTTGAGG
CCCCCCCGGCAGTGCCGCCACCCGCTGCGGCGGGTTCACCCGCTGCGGCG
GGTTCATGGGACTTCGCTTCGGGAGGAGGATGGTCGGTAGCATGCCGGGT
TGGTCACCAACACCAGGAGGCATCAGCAACAGCAAGCTCCGGGCAGTTCA
GCCAGTCTTCGCGGCCGAAAAGAAAACGGGAAGAGGAGCCAACGGTGGCT
CGGGCGAGCGGCGCAGAGATCAACCAGCAGAGCGCTGCTTCGGAACGAAA
TCTAGCGAGCATGGACAGCATGATGGACGTGGACGACGGGGCGGCCGGTG
GAGTTGGCACAGATGCCGGGCGTGTTTCGAAGAAGAGCCGTGAGGCTGCT
CCCGGGCCCGACAGTAGCCCGCCGCAGCCGCCGCAGATGTCTTGGCTCCC
TTGGCCTCCTCTTTGGCCCCCTGGGTTGAACTCGTCTTCTCCCCAACCGA
GTGCTGACACTGGCAAGCATGCCAACCTTCTTGAGGCCCCCCCGGCAGTG
CCGCCACCCGCTGCGGCGGGTTCACCCGCTGCGGCGGGTTCATGGGACTT
CGCTTCGGGAGGAGGATGGTCGGTAGCATGCCGGGTTGGTCACCAACACC
AGGAGGCATCAGCAACAGCAAGCTCCGGGCAGTTCAGCCAGTCTTCGCGG
CCGAAAAGAAAACGGGAAGAGGAGCCAACGGTGGCTCGGGCGAGCGGCGC
AGAGATCAACCAGCAGAGCGCTGCTTCGGAACGAAATCTAGCGAGCATGG
ACAGCATGATGGACGTGGACGACGGGGCGGCCGGTGGAGTTGGCACAGAT
GCCGGGCGTGTTTCGAAGAAGAGCCGTGAGGCTGCTCCCGGGCCCGACAG
TAGCCCGCCGCAGCCGCCGCAGAGCTGGACTAGGGGAAAGTTTCGTATCA
CGCACCACAGCGCGGTTCCAGGCGAAAACGGGCCGCTGTTTTCTCCCGGA
AAGAGGCCGCTTGCCCCCGCCGCTGGCGAACGGCGCTGGCGCGGTGGCAC
GAGGAAGGACAACAACCGGTCGCTGCTGCGCGGGCCGCCGCCGCCGCCCG
GCCGTGCCTCGCGCCTCTCTTCTGCCGCGGCAGGTCGTTCGCGTTTTTCA
CCTGCCGCCGGCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGGTTTTCTTT
TGGGGCAAGCAGCAGCAGCAAGTTTTCTTTCGGGGCAAGTAGCAGCAGCA
GCAGCAGATTTTCTTTTGGGGAGAAGGGGGCGGCTGCTTTTTCTGCGACC
AACACCGACGACGGCGACGGCAGCAACAGTGCCACGCCGGGCATCCCTCC
CCTCGTGGTGATAGACGGGAGCAACACCGCGTTCGCCTACCGAGAAGGAG
GCGGTCGGTGGTTCGCTGAGGGGCCGTTGCTTGCTATCCAGAGCTGGACT
AGGGGAAAGTTTCGTATCACGCACCACAGCGCGGTTCCAGGCGAAAACGG
GCCGCTGTTTTCTCCCGGAAAGAGGCCGCTTGCCCCCGCCGCTGGCGAAC
GGCGCTGGCGCGGTGGCACGAGGAAGGACAACAACCGGTCGCTGCTGCGC
GGGCCGCCGCCGCCGCCCGGCCGTGCCTCGCGCCTCTCTTCTGCCGCGGC
AGGTCGTTCGCGTTTTTCACCTGCCGCCGGCCCAAGCAGCAGCAGCAGCA
GCAGCAGCAGGTTTTCTTTTGGGGCAAGCAGCAGCAGCAAGTTTTCTTTC
GGGGCAAGTAGCAGCAGCAGCAGCAGATTTTCTTTTGGGGAGAAGGGGGC
GGCTGCTTTTTCTGCGACCAACACCGACGACGGCGACGGCAGCAACAGTG
CCACGCCGGGCATCCCTCCCCTCGTGGTGATAGACGGGAGCAACACCGCG
TTCGCCTACCGAGAAGGAGGCGGTCGGTGGTTCGCTGAGGGGCCGTTGCT
TGCTATCCAGTACTTCGAAGACCGCGGAGTAAAAAGCGTCGCCTTCATTC
CTCGCCCGCGCGTCGACAGTGTCAGGCCCGAAGATGTACTTCGAAGACCG
CGGAGTAAAAAGCGTCGCCTTCATTCCTCGCCCGCGCGTCGACAGTGTCA
GGCCCGAAGATGATGTGTACCCCGCATTCCAGGAAGCAAGGGCCAGCGGG
GCGATCTCCATGGTCCCAGCAGGGGGAAACGACGACTTGTACTTCCTCAA
ATGTGTACCCCGCATTCCAGGAAGCAAGGGCCAGCGGGGCGATCTCCATG
GTCCCAGCAGGGGGAAACGACGACTTGTACTTCCTCAAGTACGCCATCGA
TCGTAATGCACCTGTGGTGAGCAACGACCGTTTTCGCGATCACTCCGCCA
ACGACGACACATTAGGTACGCCATCGATCGTAATGCACCTGTGGTGAGCA
ACGACCGTTTTCGCGATCACTCCGCCAACGACGACACATTAGCTATGTTG
GGGCGAAGCAGGGCAGAGCTACGGGATTATCTTTCGGGGCACCAAGTGAG
CTATACGTTCGCGCGAGACGAGTTCGTGCCCAACCCAGAAGCGCATGTCA
TCAAGCTATGTTGGGGCGAAGCAGGGCAGAGCTACGGGATTATCTTTCGG
GGCACCAAGTGAGCTATACGTTCGCGCGAGACGAGTTCGTGCCCAACCCA
GAAGCGCATGTCATCAAGGAACTCACACGGCACGCAACGGACAAGAGAGC
GAGGCCGTCGTGCGAAGCGAGGGGAGCGCCCAGCAGCCACCCTTCTCCTG
AACCCCCCTGGCCGGCTTGAGAACTCACACGGCACGCAACGGACAAGAGA
GCGAGGCCGTCGTGCGAAGCGAGGGGAGCGCCCAGCAGCCACCCTTCTCC
TGAACCCCCCTGGCCGGCTTGA
back to top