prot_L-elsbetiae_contig72.16035.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig72.16035.1
Unique Nameprot_L-elsbetiae_contig72.16035.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length215
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig72.16035.1 vs. uniprot
Match: D7FUJ4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ4_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.720e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:    1 MADVKSKRCTHHGCTKQPSYGKEGSK-AEYCRDHAEDGMV 39
            M  V+ KRC+H  CTK PSYGK+GSK  E+C  HA   MV
Sbjct:    1 MVSVQQKRCSHPECTKNPSYGKDGSKKVEFCVQHAHQDMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ4_ECTSI8.720e-557.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig72contigL-elsbetiae_contig72:25180..27372 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig72.16035.1mRNA_L-elsbetiae_contig72.16035.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig72 25112..27443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig72.16035.1 ID=prot_L-elsbetiae_contig72.16035.1|Name=mRNA_L-elsbetiae_contig72.16035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
MADVKSKRCTHHGCTKQPSYGKEGSKAEYCRDHAEDGMVNVVSKRCAIPG
CTTRASSGEENTGTRKKCARHAEEGVICICGRSSGDSNVGGGTDDAGARG
IGTASLVGSGARRRSRAPLPSPAEPSSGRTREVNKRARRSAGSGDIHPVQ
VKREGADNRGPDDEKPGACPEPGGVVKTEGLEVFCKAEPAEGAGDAGQAK
KKRRKATRGAPRGS*
back to top