mRNA_L-elsbetiae_contig7196.16032.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7196.16032.1
Unique NamemRNA_L-elsbetiae_contig7196.16032.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: D7FMA7_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA7_ECTSI)

HSP 1 Score: 426 bits (1095), Expect = 2.220e-140
Identity = 212/250 (84.80%), Postives = 223/250 (89.20%), Query Frame = 1 
Query:    7 ENEEPQGAGLSAMRTNLKQNPAWSRAPPPTDDFLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKSLDRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALESTVAPENLPPPMGQKPLDFQGWLAERIKAEV 756
            E EE     L+AMR NLK+ PAWSRAPPPTDDFLLMFLRSEVF+P KAADRYRKFWKVKV LCGEDKA  PIKVEDAR GLD EFCQIVPGSKDREGR VV+VNTGQADK+LDR +RV AVWYVL+AALEDVETQRKGFCFVV LKT+RISQVDQKFNKMVLDSIQG+LPVRVGSMNMCY PSFFR IWMVISTFLHERVR RFRF YG DE VLEAL  TVAPENLPPP+G+KPLDFQGWLAER KAEV
Sbjct:   30 ETEELVMGSLAAMRANLKKVPAWSRAPPPTDDFLLMFLRSEVFKPHKAADRYRKFWKVKVGLCGEDKAAFPIKVEDARLGLDREFCQIVPGSKDREGRQVVLVNTGQADKTLDRKMRVRAVWYVLLAALEDVETQRKGFCFVVTLKTARISQVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKPLDFQGWLAERQKAEV 279
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: D7FMA8_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA8_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 2.450e-92
Identity = 141/238 (59.24%), Postives = 180/238 (75.63%), Query Frame = 1 
Query:   43 MRTNLKQNPAWSRAPPPTDDFLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKSLDRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALESTVAPENLPPPMGQKPLDFQGWLAERIKAEV 756
            M+ +L  NPAWS AP  TD+FLLMFLR+EVF P  AA+RYRKFWK K+ LCGE+KA LPIK EDAR  L+ EF Q+VPG++D EGR VV++ +   DK+L+R +R+L+VWYVL+AALEDVETQR+GFCFV   K  + SQ D  F KMV+ S+QG LPVR+GS+N+CY P+FFRV+W +I+ FLHERV++R R   GTD  VL  L + V P+ LPPPMG KP +F  WLAE+ + + 
Sbjct:    1 MKADLAANPAWSGAPSQTDEFLLMFLRAEVFSPSAAANRYRKFWKAKITLCGEEKAALPIKFEDARAALESEFVQLVPGTRDIEGRQVVMIVSSNMDKTLERRLRLLSVWYVLLAALEDVETQRRGFCFVGYQKAVKRSQADPTFVKMVMQSLQGALPVRIGSINICYPPTFFRVVWGIINPFLHERVKRRVRVIPGTDAEVLGVLGAIVPPDGLPPPMGPKPKEFSAWLAEQAQKDA 238
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A7S3L2B2_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2B2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.460e-35
Identity = 80/223 (35.87%), Postives = 130/223 (58.30%), Query Frame = 1 
Query:   94 TDDFLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDARE----GLDLEFCQIVPGSKDREGRHVVVVNTGQADKS-LDRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALEST-VAPENLPPPMGQKPL-DFQGWLAER 741
            TD F L+FLRSEVF  D AA RY K+W  +V + G +KA LP+ ++ A +     L + +   + G  D +GR ++ +  G+ DK+   R   V A+WY+L AA+E+ ETQ+ G  FV       +SQ+D+   K++L SIQGT+PVR+ + + C  P+F +++   +  F+ ER + R  F +G+ E V   L+S  +  E++P  +G   + D + W+ +R
Sbjct:   61 TDSFKLIFLRSEVFNADLAAKRYAKYWDKRVEIFGPEKAFLPLTLDGALKDDDAALTIGYANFLHGHCDPQGRSIMYMEAGRQDKTKYSRESMVRAIWYMLHAAMENEETQKYGMLFVTYPGGVTMSQIDRGLIKILLPSIQGTIPVRLSAFHSCQPPTFLKLVLPFVKLFMSERTKDRLLFHFGSTEKVCRKLQSYGLRKEDIPQTLGGNVVVDTKAWIEQR 283
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A7S3P5Y9_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5Y9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 8.870e-35
Identity = 82/228 (35.96%), Postives = 128/228 (56.14%), Query Frame = 1 
Query:   94 TDDFLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVE----DAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKS-LDRTVRVLAVWYVLMAALEDV-ETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALEST--VAPENLPPPMG-QKPLDFQGWLAERIKA 750
            T++F LMFLRSEVF  D AA RY  +W  +V +CG +KA LP+ ++    D    L + F   + G  D  GR ++ V  G  DK+   R     AVWYV+ AALE++ E Q+ G  F+ +   ++++Q D+   K+VL +IQGTLPVR+ + ++C  P+FF++I  +   F+ ER ++R    +G+   + E L  T  +   N+P  +G    +D   W+  R  A
Sbjct:   61 TNEFKLMFLRSEVFNADLAAKRYAHYWDKRVEICGPEKAFLPLTLDGALRDDEVALKIGFVNYLAGCSDPHGRAILYVLPGNQDKTKYTRESMGRAVWYVIHAALEEMPEAQKHGIIFMAHPAGAKLAQFDRAMMKVVLSAIQGTLPVRLSAFHICQPPAFFKIILPIAKLFMSERTKKRLCIHFGSTAKICEKLTKTYGLTKANIPQTLGGDAKVDTPAWIETRRAA 288
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A6V2CPB1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CPB1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.130e-24
Identity = 74/222 (33.33%), Postives = 119/222 (53.60%), Query Frame = 1 
Query:  109 LMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPI-----KVEDAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKS-LDRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTS-RISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALEST-VAPENLPPPMGQK-PLDFQGWLAERIK 747
            LMFLRSE+F    AA+RY K+W  ++ L GE+KA  PI      ++D    L++ F +++ G  D  GR ++ ++    D +   R   V AVWY++ AALE    Q+KG  F+V +  +  +S  D+    MV +SI   +P+R G++++   P  F V+  +I   L  R+R   +   G+++ +L+ L    V  + LP  +G K   D   WLA+R K
Sbjct:  131 LMFLRSELFDVQPAAERYAKYWNKRIELFGEEKACKPILSLNDALQDDESALNVGFIKLLDGVTDDRGRALMWIDPANLDSTKYSRESMVRAVWYIMHAALESETAQQKGLVFLVYIGNNPALSVFDRPLISMVAESISYLIPLRAGAIHLFPTPLVFSVLLNIIKYVLGSRLRNTLKVTGGSNDKILDTLNKLGVTTDVLPIEVGGKVDHDHDAWLAKRRK 352
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A7S2GSM7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSM7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.000e-20
Identity = 68/217 (31.34%), Postives = 120/217 (55.30%), Query Frame = 1 
Query:  112 MFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDA-RE---GLDLEFCQIVPGSKDREGRHVVVVNTGQADKSLDRTVRVL-AVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEAL-ESTVAPENLPPPMGQKP-LDFQGWLAER 741
            +FLR E F  ++AA R   +W+ K+   G +K+ +P+ +++A RE    L+    +++P + D  GR ++  +    D ++     ++ A+WY+L+AA+ED  TQ +G  FV+ LK S + Q D+K    +L+     +P+R  S ++C+  + F +   ++   L +R+R R     GT+E VL  L E  + P+ +P  MG K  LD + WL+ R
Sbjct:   92 LFLRREAFDAERAARRLVDYWQQKLKWFGPEKSFIPLALDNAMREDTAALNRGLLRLLPVT-DSFGRCILFCDISLHDATMYSMESMMRAIWYMLLAAIEDETTQNRGAIFVLYLKQSTLDQFDRKLLHRLLELEDKFVPIRFRSFHICHPGACFDIERPILQFLLGKRLRARMDVHQGTEEEVLIELDEYGMPPDRVPSIMGGKVVLDHERWLSNR 307
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A1E7FHR2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHR2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.600e-12
Identity = 69/244 (28.28%), Postives = 115/244 (47.13%), Query Frame = 1 
Query:   19 PQGAGLSAMRTNLKQNPAWSRAPPPTDDFLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDAREG----LDLEFCQIVPGSKDREGRHV-VVVNTGQADKSLDRTVRVLAVWYVLMAALEDVETQRKGFCFV-VNLKTSRISQVDQKFNKMVLDSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALESTVAPENLPPPMGQKPLDFQGWL 732
            P  AG  A +  L+Q+  +       + FL+MFLR+  F    AA R+  F++ K+ L G +K    I+V+D  E     L+  + Q++   +DR GR + +++   +  K+L   +R   ++ V+M AL+DVETQ++G   +  N+  S        +   +L S+   LP+R   ++ CY     R ++ V      +  R R RF  GTD  V+  L +   P          P+ F G L
Sbjct:    9 PDNAGKEAYQHALEQDAEYVL----DEKFLIMFLRAVEFNTKTAAIRFVAFFETKLELFGREKLGRDIRVDDLDEDDINCLESGYAQVL-NKRDRAGRAIFMLMPMIRRYKTLQNRMRT--IYMVIMFALKDVETQKRGIVAIPYNVGPSHTKDRQAVWKNALLVSV---LPIRFTGVHYCYDDEKLRAVFFVAMVVFEKAARIRSRFHLGTDMEVIYTLMTFGIPNEA------LPVSFSGSL 236
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A7S4ADD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ADD2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.290e-11
Identity = 68/217 (31.34%), Postives = 107/217 (49.31%), Query Frame = 1 
Query:  103 FLLMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPIKVEDAREG----LDLEFCQIVPGSKDREGRHV-VVVNTGQADKSLDRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVLDSIQ--GTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDEAVLEALESTVAPENLPPPMGQKPLDFQGWL 732
            F LMFLR+  F    AA R+  F++ K+ L G++K    I+V+D  E     L+  + QI+ G +DR  R + +++   +  K+L+  +R  A++ VLM AL+DVETQ++G   +       I Q   K  + V  + Q    LP+R  +++ CY     R I+ +    L +  R R RF  GTD  V+  L +   P          P+ F G L
Sbjct:   91 FQLMFLRALEFDVKAAAARFISFFQEKLKLFGKEKLGRDIRVDDLDEDDIACLESGYAQIL-GVRDRADRAIFMLMPMIRQFKTLENKMR--AIYMVLMFALKDVETQKRGIVAI----PYNIGQGRSKDRQAVFKNAQLLAALPLRFTAVHYCYDDEKLRHIFFLAMYALQKAARIRTRFHLGTDMEVIYTLMTFGLPSE------SLPVSFNGSL 294
[Close]
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Match: A0A7S4QUR0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUR0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.600e-5
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  109 LMFLRSEVFRPDKAADRYRKFWKVKVALCGEDKAVLPI-----KVEDAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKS 339
            LMFLRSE+F    AA+RY K+W  ++ L GE+KA  PI      ++D    L++ F +++ G  D  GR ++ ++    D +
Sbjct:  175 LMFLRSELFDVQPAAERYAKYWNKRIELFGEEKACKPILSLNDALQDDESALNVGFIKLLDGVTDDRGRALMWIDPANLDST 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7196.16032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FMA7_ECTSI2.220e-14084.80CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
D7FMA8_ECTSI2.450e-9259.24CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S3L2B2_9STRA2.460e-3535.87Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S3P5Y9_9STRA8.870e-3535.96Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A6V2CPB1_9STRA2.130e-2433.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2GSM7_9STRA9.000e-2031.34Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FHR2_9STRA1.600e-1228.28Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4ADD2_9STRA7.290e-1131.34Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4QUR0_9STRA4.600e-535.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7196contigL-elsbetiae_contig7196:1759..8500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score421.0
Seed ortholog evalue3.7e-115
Seed eggNOG ortholog2880.D7FMA7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCRAL/TRIO, N-terminal domain
Ec32 orthologEc-17_003650.1
Exons5
Model size2573
Cds size717
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.2099738-UTR-L-elsbetiae_contig7196:1758..18001622816800.2099738-UTR-L-elsbetiae_contig7196:1758..1800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7196 1759..1800 +
1691683823.1071835-UTR-L-elsbetiae_contig7196:1758..18001691683823.1071835-UTR-L-elsbetiae_contig7196:1758..1800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7196 1759..1800 +
1622816800.275895-UTR-L-elsbetiae_contig7196:6686..85001622816800.275895-UTR-L-elsbetiae_contig7196:6686..8500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7196 6687..8500 +
1691683823.1838434-UTR-L-elsbetiae_contig7196:6686..85001691683823.1838434-UTR-L-elsbetiae_contig7196:6686..8500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7196 6687..8500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816800.2196765-CDS-L-elsbetiae_contig7196:1800..19351622816800.2196765-CDS-L-elsbetiae_contig7196:1800..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 1801..1935 +
1691683823.121997-CDS-L-elsbetiae_contig7196:1800..19351691683823.121997-CDS-L-elsbetiae_contig7196:1800..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 1801..1935 +
1622816800.2299562-CDS-L-elsbetiae_contig7196:2425..25511622816800.2299562-CDS-L-elsbetiae_contig7196:2425..2551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 2426..2551 +
1691683823.1327324-CDS-L-elsbetiae_contig7196:2425..25511691683823.1327324-CDS-L-elsbetiae_contig7196:2425..2551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 2426..2551 +
1622816800.2409291-CDS-L-elsbetiae_contig7196:3684..38431622816800.2409291-CDS-L-elsbetiae_contig7196:3684..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 3685..3843 +
1691683823.1439705-CDS-L-elsbetiae_contig7196:3684..38431691683823.1439705-CDS-L-elsbetiae_contig7196:3684..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 3685..3843 +
1622816800.2542698-CDS-L-elsbetiae_contig7196:5221..53581622816800.2542698-CDS-L-elsbetiae_contig7196:5221..5358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 5222..5358 +
1691683823.16001-CDS-L-elsbetiae_contig7196:5221..53581691683823.16001-CDS-L-elsbetiae_contig7196:5221..5358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 5222..5358 +
1622816800.26379-CDS-L-elsbetiae_contig7196:6526..66861622816800.26379-CDS-L-elsbetiae_contig7196:6526..6686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 6527..6686 +
1691683823.1738954-CDS-L-elsbetiae_contig7196:6526..66861691683823.1738954-CDS-L-elsbetiae_contig7196:6526..6686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7196 6527..6686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7196.16032.1prot_L-elsbetiae_contig7196.16032.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7196 1801..6686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7196.16032.1

>prot_L-elsbetiae_contig7196.16032.1 ID=prot_L-elsbetiae_contig7196.16032.1|Name=mRNA_L-elsbetiae_contig7196.16032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MRTNLKQNPAWSRAPPPTDDFLLMFLRSEVFRPDKAADRYRKFWKVKVAL
CGEDKAVLPIKVEDAREGLDLEFCQIVPGSKDREGRHVVVVNTGQADKSL
DRTVRVLAVWYVLMAALEDVETQRKGFCFVVNLKTSRISQVDQKFNKMVL
DSIQGTLPVRVGSMNMCYAPSFFRVIWMVISTFLHERVRQRFRFFYGTDE
AVLEALESTVAPENLPPPMGQKPLDFQGWLAERIKAEV*
back to top

mRNA from alignment at L-elsbetiae_contig7196:1759..8500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7196.16032.1 ID=mRNA_L-elsbetiae_contig7196.16032.1|Name=mRNA_L-elsbetiae_contig7196.16032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6742bp|location=Sequence derived from alignment at L-elsbetiae_contig7196:1759..8500+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGAAGAAAACGAAGAGCCGCAGGGCGCGGGCTTGTCGGCGATGCGCAC
CAACCTCAAGCAGAACCCGGCGTGGAGCCGGGCGCCGCCCCCCACGGACG
ACTTCCTCCTCATGTTTCTGAGAAGCGAGGTTTTCAGGCCGGACAAGGCT
GCGGATCGATACCGCAAGTTTTGGAAGGTAAACCTTAACATTCATCAATT
TTGCGCGCTCATGTCGTCTTTTTGTGGTGTTGTTGTTGTTGGTGGTGGTG
GTGGTGGTGTTTAACCTCCGGAGTACCTACGCCGAGACACGGAGTTGAGA
TCTGGCCCATCAATCGTGCCTTCGGTTCGGTCGCCCTCTACAACGTCCGC
CTATACATGTATTGTGCCATTAGTTGAAGAATGGAAGTAGTTAACGTGGA
GTTCCTGCTTGCCGTGAGTCACATCATCAGTTTTCGGCGGGGGTGATAGG
TAATTAGTTCAACCTTTGAAGAATTCCGGGCCTCTTAGTGTCACTGCCTT
CGAAATATTTGTCAAAGTCATGTAGGGTCATTTTCATGTCGCCGTTGGTG
GCAATTGCACATTGCCCATTCTATCAATGTCATACTCAATAGTAATATAT
CGTCGTTTTCATGTCGTCGTCGGCGCCAGTGCTCATTTCCCGTTGCGATT
GGATTGGATTGAATCAGGTGAAGGTGGCCCTCTGCGGCGAGGACAAGGCG
GTGCTGCCCATCAAGGTGGAGGACGCGAGAGAAGGCCTCGACCTAGAGTT
CTGCCAGATTGTTCCCGGGAGCAAGGATCGTGAGGGCAGACACGTGAGTC
GTTGGGCGTTGGCTGTTGGTGCGGAAGCATGTATGTATGTGCTTGGTCTC
ATCCCTTCTCGACAAAAGTGCGCTACATACACAAGCATTTGAGCTGAGCT
TAGGCGAGCAGTCAAGATGTGTTTACACCCTTCTGATGTACTCTACTGGT
TATTATTTCGAGCGAAGGAACAATGAAATAGGTGGTATTTATATGGGAAC
CACGACCGCAAGAATAGAGACGACCAAGCCTTGGCTATAAAAACGCGGCA
TACCCGAGCTGGTCCCAACACACCTCCTTTGGAAAGTTTGGCTTGATCTG
ATGTAAACCGCAGCTTACTTGGCCAGGTTGTGCCATATACGCCCAGAGAC
AGCGCAATTAAATTGCACGGGTAAACCGGCGATCCCCACCGCTCTCATTG
GCATTTGAAGACTAGCCGGCTCTTTCCAGAAAATTATGTCGCTACATGCA
TGTTCTTCGTGTCTACCCCCCCCCCCCGCCGCCGCCGCCTCGAGTCTGGC
CGTTGTACACCGAATTTCAGGATTTGAAGTACCTTTTCTAAAACGCTGGG
CAATAAATAGTGCACCGATGTTTAAAAATGATGGATCCAACAGGCTTTCT
GCAATAAGCCCCCAATTCTCAAAAAGAGCTGTGGGGGCACAGCGGGGGTT
ATCTAGGAAATACTACATACTGTATGTAGAGGGAAAATCCCCACAGCCAC
TTTTTCAGACATGGGGGCCCTGCTGCAGGAACGCGGCGAAAAAACATTCG
CCTCACACAGCCAGTCCCTTCTCGACCAGAACATTCGAATCGAATCATCC
GAAAACCTGGCGGCGAATGTCGACGCCACACGGCGACACCCCTGCTGCTG
CTGCTGTAGGCGGCGCTGGTGCCGCGGCCGTCACCTTCCGTTCAAGAGAC
CAGGAGGCCGGAGATGTTTTCGTGTTGTAGCAGAGGCATCACGGCTTTTT
CCCCTCGAGTACAAGCGAGGTCAGCGTCATCCAGCGTAATAAACCAAGCG
CTCGTGCTTCGATGCTCGTGATTTGACGACCCGCCAGCCACACCCTGACC
CCTCCCCTCCCGTTTTACCCCGCATCCCCCCGCCTTTTCTCCGGCTGTGT
AAAACATCCCCCCTTGGCCGTCGAAGGTGGTGGTGGTAAACACGGGGCAA
GCCGACAAGAGCCTGGACAGAACGGTCCGGGTCCTGGCGGTGTGGTACGT
CCTGATGGCGGCGTTGGAAGACGTCGAGACCCAGAGGAAGGGCTTCTGCT
TCGTGGTGAACCTCAAGACCTCCAGAATATCGCAGGTGTGGGCAAGAGGG
GCAAAAAGGGTGTGTATGTACCAGGCTCTTTGTGTTTCGTCGCCCAAGAG
GCCCGCCTGTGTGTGCAATGAGGTAACCGCAGGCCGCACACACCCTCTTC
GTCGTGAAACCGTCACAACTGAGGTCGGCACGTTTCATGACAGTGAAAAT
GCCAATAATGGGAGAAAAAAAAACAAAAAATGACAACAACCACACGGGGG
GCCAGATCGCGACCGGCACCCCCTCTCGTCCCGTAGACTGTGGAACCGAC
GAGCAGAAAGAGCACGAACGAGGGGCACCGACAGCGTGTACACGGCCCCA
CCAACCACGCCACCCCTGTGTTTGGGGGAATATTCAGTGAGCGGGGCTCG
GAGAGTAGCGAGCCATTGTCACCACCCACCAGACCCCCCCAACAAGAGCA
GGTTGTTTGGCGCTGTAAGCGTACGGCGTGTGTGAGAAGGAACGTTGGCG
CCCGTAATTTCATGCTGGACTATCCATGCCCGATAGGCGGAGTCCTTTTC
GTAAATCGCACCAGTCGCCTTACGAGAAGTTTTTTTTTTCTCACTCAAAG
TGATCGCGCGCCCGTCATCGCACACGTGTCGTAGAGCAGGAAACAAAAGC
TACCGTATGGTGTAGCGTCACCTTTTTCCCGACTCAGAAGGAGAGAAGGA
GGCAGGGCGCAAGTTTCGTGTGTGATACATCTGTACGGAGGGAAGAGAGA
TGCAGGGATAGGCGGCTTGGCGAAACGTTACACAGCATTTTTGGCTAACG
TACGAAGAGAACTTTACGCCCAGAGTTAATCGTCATGGGGATCGGGACGA
TGTTGCGTTGCTCTCCCTGATTTAGTTGGGGTTTATCCTCGAAACAATTC
AACGAGCGCGCACGACACAGTAGCAGTCAATGATGGCACGCACGCCCTGC
GCGTTTTCCGGACGCTTGACAATTAATTCCCTGGGGCATACGTCCCAACA
AGCTCATTTTGAGAAAGCGCTCCAGAGTGTGCCCCCCCCAGCTTGAACCG
CGCCGGCAACCCGCCGTTGCTCATGACCGAAAACTACTCCTCAATTCCCT
GTCATTAAGATAACGCTTGGCGTGTTTACACAAACTTCGGCCTCACCGCC
GACGAGGGAAAGGGACGGCTGAACCCTTCTCGCGATAAAAAACTTAGACA
AGCACCGCAGAAGGGGGGAGTGGGAGCCTCGGGGAAAGGGGCCCTTCCAT
TTGGCCACGGTTCAGTACTCTGGCAAGATGCCGTGGTGACGAGAAGCCCA
TCGAGCACTGAAAATAAATGTGAACAAGGAAACGGTAGGAGGCCGACGGG
GGAGCTTTGTCGTTTTGCCGCTCACACGTTTTTTTTTTTTGTGAATAATG
TAAACGAAAACAGGTGGACCAGAAGTTCAACAAGATGGTCCTGGACAGCA
TCCAGGGCACTCTGCCCGTTCGGGTCGGCAGCATGAACATGTGCTACGCG
CCTTCTTTTTTCCGGGTGATTTGGATGGTCATCAGCACGTTTCTGCACGA
GTGAGTCCTGGTGGCGCGGTGCGGTGCGGACGTATTGTAGTCTGTTGTTT
ATTTTTATATTTTTTATTACGGATATTTACCCACAAGTTTACCAGCGCTC
GGACGAGGTTTTTCTGTAGTTCGGCGGAAAGAAACGCCGACATTTGTAAC
CGAGCCGTACTGAGGTTGCCCAGCTTTCTGTTGCCTTGTCGTAACCCACT
TCGTGGATGATCACTCTGGTTGGCCCATCAAGAGCAGTAGTGACCGAGTG
GTGCTCGTGCCCGTCCTCACCTTTTTAATTTCGGTTATTGTTTGGTCGGA
CCAGTGTGAGCGGAAAGCTTCGGTGCGGGCGAACAACTTGCTGAGCGATC
GTTCAACTTTCCGTTCCGTTGTTGTCCAGGGATTCGTCGCATCTTTATTT
TTTGGGGATTTTTTGTCTCTGAGATTTGAATTTGGGTGCGAACTTCATCC
GGTTGTTTTTATGCTCGCTTCGCCAAATATTACGTCTCTGTATGGAATAC
CGTTTGAACCCCATATAGAGTATTTCCTCTAGTATGGGGTAGGTTCCATC
TTTGGTTCATTGTTTATTTATTTTCTTTAACTTTTGCTGACCTCGGTGGG
CGCTGGTACCGTGTGGTACCCAGCGTTATCTGCGTTGGTACCATATGCCG
CGCCTACGTGTCCCGCTCAAGGTGATCCCTGCTCAGTGCCAAAAGTTCGT
GCTAGAAAAGTATATACGCGATACATACGTACAGACCAGAAAAGCTCGCG
CCGATTTCCCCCTCCTTCGCCTCAACCACCTCCTCGATACATGCGCGTTT
TGTTGTTAAATTTCTCTGAAAATACAAAACTTTGTGGGGTGGGCAGGCGG
TGTCTCAAAAGACATACCCTCTTTTCCTCTGGTTTTCATGTCTCAGGTAG
GAAAAAAAAGGAAGTGAGAGACTGAACAGCGCTCTCCTATGTTTTGACTC
TTTATTGCATGAGGGAGATGGGAACCGTTCCGTTTTTCTCATCTCCGCTT
TTTTATACATAATACATCAGTATTTTTGAGTCAGTTCTTCTCCTCAGATA
GTATGGGATGAAAACAGTGGTCCTCCCTCCCGCGGCTGGTGTGTTGTCCA
CTCCTCCCTTACTTTGGAGCCTCTTGTCACTGACTACAATACTGCTGTTG
GTCTTGCTTTTTTGCTAGGAGGGTGCGCCAGAGGTTCAGGTTCTTCTACG
GCACCGATGAAGCCGTCCTCGAGGCGCTCGAAAGCACGGTCGCCCCGGAA
AACTTGCCGCCGCCAATGGGCCAGAAGCCCCTCGACTTTCAGGGGTGGCT
TGCAGAGCGAATCAAGGCTGAAGTTTAATCTTTTGAGCCGGCGGCTTAGA
AACTTGATGGTCTTGGACCGGACCATTTGGGGACTCGAGGTTTTACGTTG
CATGCATTACCGCGGAAATGAGTGTGCTCCGAGAGAGTGTGGCGCGCACG
GTTTTTTGTGGTTTCTGTTTTTTTAATTTCACAAGACAGCAGTAGGTCGG
CCGTTTTCTCGTCGAGAGACGAAGGGCTTGTCACGTGTCTTGGATGTCTT
TCGCCGATCTGTGTGGACACACAAGACGTGACGGTATGTATTTCTTTTGC
CGAGAAGTTCGGCTGATGGTGTAGTCTTCCTATTGGCCGCTCCTCCGATC
ACCTGGTCTGCGGATGACATTTAGATATAGATTGATTGGGGTGCTGACAT
TTCGGTGAAGGGTGCTTTGCGCGTGAGCTAAATAACGACGCATAGATACA
ATAACTCTGGCGTGGATGTTTTTGTTTTAAGTGACAATAAAGGTTCATCG
CTTACAATATTGCTTGTTTTTGAGGGGTGGTGGCGGGGGGGTCTGCAGCT
TTTTCGCTCTGCACAACTGCTGCTGCTGGCTGCTTGGCGTGTATCATATG
TTCTGTTTACTGTGCGTGATATTTTGGCCGAACGAGTGTTCGAATAGGCG
GGTGGGTCGCTACGTGCTGCTTGATGTTGGTTTCGTTGGCACATTCTCTT
GTTCGGCGTGCACTGCACTGCTTTTGCACACCGCCGTGTTTGTGTTGCAT
TTTTAGTAGGAGAGTGATGGCATACCTCGCTTGCATGTTTTTGTGTGGCG
TTCAGCGTCGTCGTGATTCCGCCAGGTCACTCAGTGTTTTGGGGGGGGCG
TGTGTTTTTCTCTCTTTGACCGTTTTTGACGTGCTGCTGTTTTGTGGTTT
GCTGTGCCTTGGCGTTTATTTATTTTTTCAACTTTTTTCTGCCAGGCGTG
CTTCTCCCGAGGTCATGGTACGTGATGTTGCACCGCAAGTGAACGATAAA
CAGCGAATCGTTTTTGCGTATCGTGATTAGATTGGTGGAGGGCTCTCAGC
AGGTAGGTCTCCGACTGGAATCGCACGGTTTTGCGGCGGAGTTGCTAATT
GTTTCTGCATCTGATTTGTCAGCAAAATCAGCAACACCGCTCTTGTGTTG
ATCCAATGGGGTATGTAGTGCTGCAATTTAGGACAGCAGTAATGCATTGA
CGGTTCTTGGGTGGTCATCTATGTTTGTTTGGATGGGTCTCAATGTTGAC
AGAATAGCGTGTCTCGGGGCGGTTATTGTTGGATGTTGATGGAAGAATGA
TAATGAATTTTTCTTTGGGGGTGGTTTGGTGATGGGAGTGCGGGCAGCAT
GTATTTATCTGCGTACGTGCCCCCCTTGTCAGCGCCTCTGTACGTAGATT
TGCTGAAGGCGTGGTACTCACAGATCGAATGGTGGCAGCGTCACGGGGGA
GCTTTAGAAAGTTTTTGTGTGGAAAAGCGTACGTACTTCGTTGTTGCGTG
TTGCGTGCCCGACGAGACCTATGGCGAATGGCGTAGGAAGCTGGCTCGTG
GGGAAAGTTTGCTGGGGAGTCGATGAAGGGCTGTGAGGCGATTCCAACCA
CAAAAGTTGCCATGCAGGGGGAGGTTGGAGGTTCAATGAGGCGCCTTCAT
TTGAGAGGTACTCCTATGACTGAAGAATATTGACCGCAAGTTTCTATCCG
TAAAGAAGAGCATCGCTGTGGAACTTTACTACTCTTTGTGTCACGAGCAA
TTTTGGAGGTCTAGGCAAACGCGTTGAGGGGACAAGTTTCAAGTTTCTGT
CTGTATGTTGTCTTCACTTAAAAACCGTTCCGATCTCTCCAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7196:1759..8500+

>mRNA_L-elsbetiae_contig7196.16032.1 ID=mRNA_L-elsbetiae_contig7196.16032.1|Name=mRNA_L-elsbetiae_contig7196.16032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig7196:1759..8500+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCACCAACCTCAAGCAGAACCCGGCGTGGAGCCGGGCGCCGCCCCC
CACGGACGACTTCCTCCTCATGTTTCTGAGAAGCGAGGTTTTCAGGCCGG
ACAAGGCTGCGGATCGATACCGCAAGTTTTGGAAGATGCGCACCAACCTC
AAGCAGAACCCGGCGTGGAGCCGGGCGCCGCCCCCCACGGACGACTTCCT
CCTCATGTTTCTGAGAAGCGAGGTTTTCAGGCCGGACAAGGCTGCGGATC
GATACCGCAAGTTTTGGAAGGTGAAGGTGGCCCTCTGCGGCGAGGACAAG
GCGGTGCTGCCCATCAAGGTGGAGGACGCGAGAGAAGGCCTCGACCTAGA
GTTCTGCCAGATTGTTCCCGGGAGCAAGGATCGTGAGGGCAGACACGTGA
AGGTGGCCCTCTGCGGCGAGGACAAGGCGGTGCTGCCCATCAAGGTGGAG
GACGCGAGAGAAGGCCTCGACCTAGAGTTCTGCCAGATTGTTCCCGGGAG
CAAGGATCGTGAGGGCAGACACGTGGTGGTGGTAAACACGGGGCAAGCCG
ACAAGAGCCTGGACAGAACGGTCCGGGTCCTGGCGGTGTGGTACGTCCTG
ATGGCGGCGTTGGAAGACGTCGAGACCCAGAGGAAGGGCTTCTGCTTCGT
GGTGAACCTCAAGACCTCCAGAATATCGCAGGTGGTGGTGGTAAACACGG
GGCAAGCCGACAAGAGCCTGGACAGAACGGTCCGGGTCCTGGCGGTGTGG
TACGTCCTGATGGCGGCGTTGGAAGACGTCGAGACCCAGAGGAAGGGCTT
CTGCTTCGTGGTGAACCTCAAGACCTCCAGAATATCGCAGGTGGACCAGA
AGTTCAACAAGATGGTCCTGGACAGCATCCAGGGCACTCTGCCCGTTCGG
GTCGGCAGCATGAACATGTGCTACGCGCCTTCTTTTTTCCGGGTGATTTG
GATGGTCATCAGCACGTTTCTGCACGAGTGGACCAGAAGTTCAACAAGAT
GGTCCTGGACAGCATCCAGGGCACTCTGCCCGTTCGGGTCGGCAGCATGA
ACATGTGCTACGCGCCTTCTTTTTTCCGGGTGATTTGGATGGTCATCAGC
ACGTTTCTGCACGAGAGGGTGCGCCAGAGGTTCAGGTTCTTCTACGGCAC
CGATGAAGCCGTCCTCGAGGCGCTCGAAAGCACGGTCGCCCCGGAAAACT
TGCCGCCGCCAATGGGCCAGAAGCCCCTCGACTTTCAGGGGTGGCTTGCA
GAGCGAATCAAGGCTGAAGTTTAAGAGGGTGCGCCAGAGGTTCAGGTTCT
TCTACGGCACCGATGAAGCCGTCCTCGAGGCGCTCGAAAGCACGGTCGCC
CCGGAAAACTTGCCGCCGCCAATGGGCCAGAAGCCCCTCGACTTTCAGGG
GTGGCTTGCAGAGCGAATCAAGGCTGAAGTTTAA
back to top