mRNA_L-elsbetiae_contig7188.16024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7188.16024.1
Unique NamemRNA_L-elsbetiae_contig7188.16024.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7188.16024.1 vs. uniprot
Match: A0A6H5L740_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L740_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.790e-5
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:  718 LQVQVDHCLPDSCKHPCVSAVGSCCGPEGMGGFGSPRETAAP 843
            +QVQVDHC+   CKHPCVSAVG CCGP  M    +P+   +P
Sbjct:  191 IQVQVDHCVDSRCKHPCVSAVGGCCGPTAMSARPAPQCALSP 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7188.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L740_9PHAE4.790e-557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7188contigL-elsbetiae_contig7188:3469..4597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1129
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7188.16024.1prot_L-elsbetiae_contig7188.16024.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7188 4150..4344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.147175-UTR-L-elsbetiae_contig7188:3468..41491622816799.147175-UTR-L-elsbetiae_contig7188:3468..4149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7188 3469..4149 +
1691683822.142703-UTR-L-elsbetiae_contig7188:3468..41491691683822.142703-UTR-L-elsbetiae_contig7188:3468..4149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7188 3469..4149 +
1622816799.1708043-UTR-L-elsbetiae_contig7188:4344..45971622816799.1708043-UTR-L-elsbetiae_contig7188:4344..4597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7188 4345..4597 +
1691683822.172253-UTR-L-elsbetiae_contig7188:4344..45971691683822.172253-UTR-L-elsbetiae_contig7188:4344..4597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7188 4345..4597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.1573722-CDS-L-elsbetiae_contig7188:4149..43441622816799.1573722-CDS-L-elsbetiae_contig7188:4149..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7188 4150..4344 +
1691683822.1581802-CDS-L-elsbetiae_contig7188:4149..43441691683822.1581802-CDS-L-elsbetiae_contig7188:4149..4344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7188 4150..4344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7188.16024.1

>prot_L-elsbetiae_contig7188.16024.1 ID=prot_L-elsbetiae_contig7188.16024.1|Name=mRNA_L-elsbetiae_contig7188.16024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MSTPRPSFSIVFLQVQVDHCLPDSCKHPCVSAVGSCCGPEGMGGFGSPRE
TAAPPASAPWTNGS*
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mRNA from alignment at L-elsbetiae_contig7188:3469..4597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7188.16024.1 ID=mRNA_L-elsbetiae_contig7188.16024.1|Name=mRNA_L-elsbetiae_contig7188.16024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1129bp|location=Sequence derived from alignment at L-elsbetiae_contig7188:3469..4597+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGAAAATCGAGAACAAAAAAAATGGCGATAGTTTCGGTACTCAAG
GCCAAATCAAACTTTTGGCGACACTTTCTATACTGAAAGCCAAGACAAAT
TTGTTTCTAGGCCTTGGCTACACAGACGTTCTCCCTCTCGGTGGACAAGC
GTTGGTACCAGGCCTGTCGCCAAATCGTCGCCATATGGCCATCTAGGACT
GAAAGGGTTAAAGGCCGGCGAGATGCGTACGAAGTACCATAGGTATCGGT
AGGGGGCATACACGGTCGAGGAGGTGTGTGTGGCTTGGCGTCCATGTTGT
GGGCCTACAATAGAGACCTCGGTGAGATACCTGCTAAGTACAAGGAGGTG
TGGTTCGCGTTCGGATGGTTCTTGTATCCGTGGTTACATACGGCGAAGTT
ATCGAGCATACATACCGCAGACGCCATGGTTTTTGATATTCCAAGCCGTC
ACGGCGCATTGTAGCGCGGTGAGCTCGTGGCTTCGCTTCTCGCTCTCTCT
TCTCTCTTGTCACACGAACACGCGGCGCACTCACGCGTGCCCGCCCGCGC
GCGCGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGAATAAATCGGCCTGGA
ATAAATCGGCCAAGCCGTCTCGGCGGTGGAAGACGCTTTTTTTGGGACCG
CGAAGATTGAAACTGTCCACCGGAGGAGCAAATGTCGACCCCCCGCCCAT
CTTTTTCCATCGTTTTCTTGCAGGTGCAAGTGGACCACTGCCTGCCCGAT
AGCTGCAAGCACCCGTGCGTCTCGGCAGTGGGCAGCTGCTGCGGGCCAGA
AGGCATGGGGGGCTTCGGGTCCCCCCGGGAGACCGCCGCCCCCCCCGCGT
CGGCACCCTGGACGAACGGGTCCTGAGGAAGGGGACGGGCCGGAAAAAGG
GCGTTTTTTATTGTGTTGGGTGGCTTCATAAATACGTACATACTTCTGCG
TACATGGCCGAACCCACTAGAGGTGGGCTCGACGTGGCACGTTTTTTTGT
CCTCAGTGCGGTTTGCTGGTCGTGCGTGCGTGCGTGCTTCCGGGCCTCCC
CGGCTTGTGGCCGCCGCTGCTTCTGGGTTTTACGCCGGCGGCGGTGGCGG
TGGCCACCGCCCCCGGGTCGCTTGAACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7188:3469..4597+

>mRNA_L-elsbetiae_contig7188.16024.1 ID=mRNA_L-elsbetiae_contig7188.16024.1|Name=mRNA_L-elsbetiae_contig7188.16024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig7188:3469..4597+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACCCCCCGCCCATCTTTTTCCATCGTTTTCTTGCAGGTGCAAGT
GGACCACTGCCTGCCCGATAGCTGCAAGCACCCGTGCGTCTCGGCAGTGG
GCAGCTGCTGCGGGCCAGAAGGCATGGGGGGCTTCGGGTCCCCCCGGGAG
ACCGCCGCCCCCCCCGCGTCGGCACCCTGGACGAACGGGTCCTGAATGTC
GACCCCCCGCCCATCTTTTTCCATCGTTTTCTTGCAGGTGCAAGTGGACC
ACTGCCTGCCCGATAGCTGCAAGCACCCGTGCGTCTCGGCAGTGGGCAGC
TGCTGCGGGCCAGAAGGCATGGGGGGCTTCGGGTCCCCCCGGGAGACCGC
CGCCCCCCCCGCGTCGGCACCCTGGACGAACGGGTCCTGA
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