mRNA_L-elsbetiae_contig7181.16019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7181.16019.1
Unique NamemRNA_L-elsbetiae_contig7181.16019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.490e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  136 PSQCLDAFTIALNQTTEKT-WYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLW 306
            PS+CLDAF +ALNQ  +   WY ST QLQL+SL FCVACRSV T+ + V + TP RL+
Sbjct:   27 PSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLF 84
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.580e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  139 SQCLDAFTIALNQTTE-KTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLWIDA 315
            SQCL+AF +AL+ T + + WYAST QLQLASL  C ACR V TL+++V++ TP  LW +A
Sbjct:   10 SQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEA 69
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-10
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  163 IALNQTTE-KTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLWIDAPADQ 327
            +ALN+T   K WY ST QLQLAS+ FCVACRSV+TL + V++GTP  LW D  +DQ
Sbjct:    2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQ 57
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-9
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  136 PSQCLDAFTIALNQTTE-KTWYASTTQLQLASLGFCVACRSVATLSVAVKKG-TPTRLWIDAPADQ 327
            P +CL+AF +ALN + +   WY ST +LQLASL FCV CR V +L +AV     P RLW D  A +
Sbjct:    4 PGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATE 69
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-9
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  133 VPSQCLDAFTIALNQTT--EKTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLWIDAPADQ 327
            + S+CL+AF +AL QT    ++WY STTQLQLASL FC+ACR   TL + V    P RL  D   ++
Sbjct:   26 ISSRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNE 92
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 8.620e-8
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  139 SQCLDAFTIALNQTTE-KTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLWIDAPA 321
            S CL+A  +AL++T + K+WY ST +LQLASLGFC ACR+  T+ + V +  P RL   A A
Sbjct:  134 SSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADA 195
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BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: A0A6H5KRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.110e-7
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:  139 SQCLDAFTIALNQTT-EKTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLW 306
            S+CLDAF +ALN+T  E     STT LQLASL FCVACRS + + + +   TP  LW
Sbjct:    5 SRCLDAFIVALNETCHEGKCITSTTALQLASLQFCVACRSASPVRLRIDTDTPRYLW 61
[Close]
BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-6
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  139 SQCLDAFTIALNQTTE-KTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRL 303
            S+CLDA  +AL    + + WY  TTQLQLASL FC ACR+V T+ + V    P RL
Sbjct:   83 SRCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARL 138
[Close]
BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.280e-6
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  136 PSQCLDAFTIALNQTTE---KTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLW 306
            P+QC DAF +AL+Q  E   K  Y ST +L LASL  C A RS +TL V V+  TP   W
Sbjct:   19 PTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFW 78
[Close]
BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  139 SQCLDAFTIALNQTT----EKTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTRLWIDAPAD 324
            S+ LD   + LNQ      +K W+AST +LQLASL  C ACR  A L + V   TP RL+  APAD
Sbjct:   27 SRFLDVAIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLF--APAD 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7181.16019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JFC0_9PHAE1.490e-1160.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G241_ECTSI1.580e-1156.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG83_9PHAE1.470e-1060.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI1.510e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4H1_9PHAE1.630e-949.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI8.620e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRT6_9PHAE3.110e-754.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS9_ECTSI1.430e-651.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVM8_9PHAE2.280e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL9_ECTSI1.190e-548.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7181contigL-elsbetiae_contig7181:5527..6588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816798.7296338-CDS-L-elsbetiae_contig7181:5526..56591622816798.7296338-CDS-L-elsbetiae_contig7181:5526..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7181 5527..5659 +
1691683821.7974436-CDS-L-elsbetiae_contig7181:5526..56591691683821.7974436-CDS-L-elsbetiae_contig7181:5526..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7181 5527..5659 +
1622816798.740053-CDS-L-elsbetiae_contig7181:6392..65861622816798.740053-CDS-L-elsbetiae_contig7181:6392..6586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7181 6393..6586 +
1691683821.8078532-CDS-L-elsbetiae_contig7181:6392..65861691683821.8078532-CDS-L-elsbetiae_contig7181:6392..6586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7181 6393..6586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7181.16019.1prot_L-elsbetiae_contig7181.16019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7181 5527..6586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7181.16019.1

>prot_L-elsbetiae_contig7181.16019.1 ID=prot_L-elsbetiae_contig7181.16019.1|Name=mRNA_L-elsbetiae_contig7181.16019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
RPGQAGHSGIGERDQQSQTNYSLQKLLGKMVVTARCRQHESKQTVPSQCL
DAFTIALNQTTEKTWYASTTQLQLASLGFCVACRSVATLSVAVKKGTPTR
LWIDAPADQ
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mRNA from alignment at L-elsbetiae_contig7181:5527..6588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7181.16019.1 ID=mRNA_L-elsbetiae_contig7181.16019.1|Name=mRNA_L-elsbetiae_contig7181.16019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig7181:5527..6588+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCAGGACAGGCGGGACATTCTGGCATTGGGGAGCGGGACCAGCAATC
GCAGACGAATTACTCTCTTCAGAAGCTTCTCGGAAAAATGGTGGTAACTG
CGCGATGTAGGCAGCACGAATCAAAACAAACAGGTCAGTGTCCAACCGCT
CTGTTTGGATCACGAACAGCTCTCGATCCCACAGCTAGCAGAAGACATCT
ACGTTTGTATCCGGTGGACTAGACATAAAATATGCTCCTACTAAGTAGAT
TCGGCGATCCACTTCGACGGGCTTGGTGTGGGGAAAGATCCGATGGATGC
TTGGAGTGCCCTTTCCTGCAACGCGGCCAAAGTGCACAATCTGCATTTTT
CAGGATCTACAGAGTGTACCGACCGCCGTCGTACATTTCGTTCGAAGGAT
TGCTGTAGATGCGTATCCCTAGCGCAGTCAATTGCCCGCTGATTTTTCTC
CGCAAGAGAGCAGCGTATGAGGTATGTGTCTACTTGCATTACAAAATGTC
GTACATACTACATTTGGACTTCAAATTCGTGTCGAGGCAAGTCGAGCAGG
CCTTCCATACTCACGGACTACTGATGTACAGCGTACATAAGTAGTCTACA
TACACAAGGAGACGCGAGCCGAGACCGGCCCACATAACCGCAGGAGGGGG
TCCACCCCCCCCCTCCTATGTGACCCCGGTTGAGTCGTCTAGCTAGAGTA
GAAGTGGAGGATGGGGGCCAAGAGGGGCAGACGACAAAATCCAATACTGG
GCAGGAAAAAAAAAAAAAAAAAAGCAATCGAGCGTCCAAGCACCGATACC
AAGCCCTCGACAGCAACGAGCTATGTATCTATGTACCTCTCTTTACGTGT
CCCTTGAATCGCGCAGTTCCCAGCCAGTGCCTGGACGCCTTCACCATCGC
CCTCAACCAGACTACCGAGAAGACCTGGTACGCGTCGACAACGCAACTCC
AGCTCGCGTCGTTAGGGTTCTGCGTGGCCTGTCGGAGCGTGGCCACGCTG
AGCGTAGCAGTAAAGAAGGGCACGCCCACCCGCTTGTGGATCGATGCCCC
CGCCGATCAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7181:5527..6588+

>mRNA_L-elsbetiae_contig7181.16019.1 ID=mRNA_L-elsbetiae_contig7181.16019.1|Name=mRNA_L-elsbetiae_contig7181.16019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7181:5527..6588+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCAGGACAGGCGGGACATTCTGGCATTGGGGAGCGGGACCAGCAATC
GCAGACGAATTACTCTCTTCAGAAGCTTCTCGGAAAAATGGTGGTAACTG
CGCGATGTAGGCAGCACGAATCAAAACAAACAGAGGCCAGGACAGGCGGG
ACATTCTGGCATTGGGGAGCGGGACCAGCAATCGCAGACGAATTACTCTC
TTCAGAAGCTTCTCGGAAAAATGGTGGTAACTGCGCGATGTAGGCAGCAC
GAATCAAAACAAACAGTTCCCAGCCAGTGCCTGGACGCCTTCACCATCGC
CCTCAACCAGACTACCGAGAAGACCTGGTACGCGTCGACAACGCAACTCC
AGCTCGCGTCGTTAGGGTTCTGCGTGGCCTGTCGGAGCGTGGCCACGCTG
AGCGTAGCAGTAAAGAAGGGCACGCCCACCCGCTTGTGGATCGATGCCCC
CGCCGATCAGTTCCCAGCCAGTGCCTGGACGCCTTCACCATCGCCCTCAA
CCAGACTACCGAGAAGACCTGGTACGCGTCGACAACGCAACTCCAGCTCG
CGTCGTTAGGGTTCTGCGTGGCCTGTCGGAGCGTGGCCACGCTGAGCGTA
GCAGTAAAGAAGGGCACGCCCACCCGCTTGTGGATCGATGCCCCCGCCGA
TCAG
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