mRNA_L-elsbetiae_contig7171.16005.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7171.16005.1
Unique NamemRNA_L-elsbetiae_contig7171.16005.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 6.040e-64
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 HLVWMAYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV 294
            H++WM+YLA+NLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV
Sbjct:  337 HILWMSYLAFNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV 434          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A812UH41_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH41_SYMMI)

HSP 1 Score: 154 bits (389), Expect = 3.010e-44
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 HLVWMAYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            H + + ++ Y +    +LA+F V+Q  CGLFLALVFGLGHNGMA Y AD RPDFWKLQV+TTRN+TST FVDWFCGGLQYQVDHHLFP +PRHNL+K
Sbjct:  173 HYMALGWILYQMPAGNALAYFLVSQTSCGLFLALVFGLGHNGMAVYPADHRPDFWKLQVSTTRNITSTWFVDWFCGGLQYQVDHHLFPSLPRHNLKK 269          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.390e-43
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 HLVWM-AYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV 294
            H  W  A LA  L  V+++ FF  AQ  CG  LALVFGLGHNGMATYDADARPDFWKLQVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL KV
Sbjct:  329 HYAWFGALLATQLSVVEAVVFFLAAQMMCGFMLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLPKV 427          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.090e-43
Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 HLVWM-AYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV 294
            H  W  A LA  L   +++ FF  AQ  CG  LALVFGLGHNGMATYDAD+RPDFWKLQVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL+KV
Sbjct:  326 HYAWFGALLATQLSAAEAVVFFLAAQMMCGFMLALVFGLGHNGMATYDADSRPDFWKLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLKKV 424          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A7S2RVB6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RVB6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.290e-43
Identity = 74/105 (70.48%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 HLVWMAYLAYNLG---FVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            H VWM  L    G    V SLA+F +A C CGLFLALVFGLGHNGMATYDA+ RPDFWKLQVTTTRN+T        FVDWFCGGLQYQVDHHLFP +PRHNL K
Sbjct:  328 HYVWMFALCSGFGRFSVVYSLAYFFIATCSCGLFLALVFGLGHNGMATYDAETRPDFWKLQVTTTRNITGGHGFPQAFVDWFCGGLQYQVDHHLFPMMPRHNLAK 432          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A6V1P576_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V1P576_HETAK)

HSP 1 Score: 154 bits (389), Expect = 7.250e-43
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 HLVWMAYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            H  W+  L   +  ++ +AFF  +Q  CGLFLALVFGLGHNGMA YDA  RPDFWKLQVTTTRN+TS  FVDWFCGGLQYQVDHHLFP IPRHNL+K
Sbjct:  328 HYSWVIALCAQMPILRGVAFFFTSQFMCGLFLALVFGLGHNGMAVYDASMRPDFWKLQVTTTRNITSNWFVDWFCGGLQYQVDHHLFPMIPRHNLKK 424          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A7S3PC52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PC52_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.440e-43
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 1
Query:   49 SLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVT-----STPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            S+AFF    C CGLFLA VFGLGHNGMATYDADARPDFWKLQVTT+RNVT     S  FVDWFCGGLQYQVDHHLFP +PRH+L K
Sbjct:   47 SIAFFMTMTCSCGLFLATVFGLGHNGMATYDADARPDFWKLQVTTSRNVTGGHGFSQAFVDWFCGGLQYQVDHHLFPTMPRHHLAK 132          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A7S3DR72_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR72_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.080e-42
Identity = 69/90 (76.67%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   37 GFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            G  KS+AFF V  C CG FLA+VFGLGHNGMATYDADARPDFWKLQVTTTRN+T        FVDWFCGGLQYQVDHHLFP +PRHNL+K
Sbjct:  335 GIGKSIAFFMVMTCSCGFFLAIVFGLGHNGMATYDADARPDFWKLQVTTTRNITGGHGFPQAFVDWFCGGLQYQVDHHLFPSLPRHNLKK 424          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A7S2XQ84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ84_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.310e-42
Identity = 75/105 (71.43%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 HLVWMAYLAYNLG---FVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRK 291
            H VWMA LA   G      SL +F  A C CGL LALVFGLGHNGMATYDADARPDFWKLQVTTTRN+T        FVDWFCGGLQYQVDHHLFP +PRHNL+K
Sbjct:  332 HWVWMAALASGFGRFSVAYSLMYFFTATCFCGLVLALVFGLGHNGMATYDADARPDFWKLQVTTTRNITGGHGIPQAFVDWFCGGLQYQVDHHLFPMMPRHNLKK 436          
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Match: A0A7S1B4C9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4C9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.830e-42
Identity = 73/106 (68.87%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 HLVWMAYLAYNLG---FVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDFWKLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV 294
            H VWMA      G     KS+  F  A C CG FLALVFGLGHNGMATYDAD RPDFWKLQVTTTRN+T        FVDWFCGGLQYQV+HHLFPQIPRH+LR V
Sbjct:  361 HYVWMAAFCSGFGRFSLAKSIGLFLTATCSCGFFLALVFGLGHNGMATYDADKRPDFWKLQVTTTRNITGGHGIPQAFVDWFCGGLQYQVEHHLFPQIPRHHLRAV 466          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7171.16005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB93_9PHAE6.040e-6495.92Cytochrome b5 heme-binding domain-containing prote... [more]
A0A812UH41_SYMMI3.010e-4470.10Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A835YIW8_9STRA1.390e-4374.75Delta-6 fatty acid desaturase n=1 Tax=Tribonema mi... [more]
A0A835YVN5_9STRA5.090e-4372.73Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2RVB6_9STRA6.290e-4370.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6V1P576_HETAK7.250e-4371.13Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S3PC52_9STRA7.440e-4377.91Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S3DR72_9STRA1.080e-4276.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2XQ84_9STRA1.310e-4271.43Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1B4C9_9STRA2.830e-4268.87Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7171contigL-elsbetiae_contig7171:2531..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.4e-49
Seed eggNOG ortholog2880.D8LQU3
KEGG koko:K21737
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
EC1.14.19.38,1.14.19.47
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size294
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7171.16005.1prot_L-elsbetiae_contig7171.16005.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7171 2543..3655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.2917616-UTR-L-elsbetiae_contig7171:2530..25421622816797.2917616-UTR-L-elsbetiae_contig7171:2530..2542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7171 2531..2542 +
1691683820.7723088-UTR-L-elsbetiae_contig7171:2530..25421691683820.7723088-UTR-L-elsbetiae_contig7171:2530..2542Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7171 2531..2542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.3044112-CDS-L-elsbetiae_contig7171:2542..27041622816797.3044112-CDS-L-elsbetiae_contig7171:2542..2704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7171 2543..2704 +
1691683820.7991707-CDS-L-elsbetiae_contig7171:2542..27041691683820.7991707-CDS-L-elsbetiae_contig7171:2542..2704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7171 2543..2704 +
1622816797.317005-CDS-L-elsbetiae_contig7171:3535..36551622816797.317005-CDS-L-elsbetiae_contig7171:3535..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7171 3536..3655 +
1691683820.8120356-CDS-L-elsbetiae_contig7171:3535..36551691683820.8120356-CDS-L-elsbetiae_contig7171:3535..3655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7171 3536..3655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7171.16005.1

>prot_L-elsbetiae_contig7171.16005.1 ID=prot_L-elsbetiae_contig7171.16005.1|Name=mRNA_L-elsbetiae_contig7171.16005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MAYLAYNLGFVKSLAFFAVAQCGCGLFLALVFGLGHNGMATYDADARPDF
WKLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKV
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mRNA from alignment at L-elsbetiae_contig7171:2531..3655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7171.16005.1 ID=mRNA_L-elsbetiae_contig7171.16005.1|Name=mRNA_L-elsbetiae_contig7171.16005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1125bp|location=Sequence derived from alignment at L-elsbetiae_contig7171:2531..3655+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTGGTGTGGATGGCCTACCTGGCGTACAACCTGGGTTTCGTCAAGTC GTTGGCGTTCTTCGCTGTGGCGCAGTGTGGCTGCGGCCTCTTCCTGGCCC TCGTGTTCGGCCTCGGCCACAACGGCATGGCCACCTACGACGCGGACGCG CGACCTGACTTCTGGAAGCTCCAGGTATGTGTGTGTGTGTTTGTGTGCGT CGTACTACTATTTACTGTAGTAGCTGACGGCAGTATTGTTGAACATGATG CACATAATATATGGCAGATAAATATGTAAAGTATTTTTTATGTGAAGAAA TAACAACCAAGAGTCGCGTAGCTGACGGCAGTATTGTTAAACATGATGTA CATAGTATATAGCAGATACATATATTTTTTTTTATGTGAAGAAATAACAA CCAAGAGTCGTGAGTCGTACGTAGCTGACGGCAGTATTGTTAAACATGAT GTACATGATGTATGGCAGATAAACATATTTTTTTATGTGAAGAAATAACA ACCAAGAGTCCCGTTCTCGTGGACGATCCGTTGTTGTTGTTGTTGTTGTT GTTGTTGACAGCAGTCAGTCCTGTAGGTGTTGACGGCCCCTCCCCGTGGT GGTATTTCGTGTTGTTGACAGCGGTCCTGAAGGTGTTGTCGGTCCCGGTG GTGGCACCTTTGTGTTTTGTTTGCTGTTCTTGGCTTGGCTCGGCTCGGCT CGTCCTAGTGGTGGTGGGTAGTGGTCGGGTGTCGGCTGGGCCCTATGGCG CTCTCACTCGCGGGCGGGGGCAGGCATTCCGCGGGGGAGGAAAAGGCAAG AACTACATCCTTGCTTGCTCGCACACGCGCACGTGCTGTGGGGAACAGCG CACCCCCCCCCCCCACCCCACCCCACCCCACCCCGCCCAGGCCCAGCGGG CCTCGACGGTTTCAGGTCACCTGTTGTTAGTATATACGCAGTAGTACGAT ACAATAGATGTATCAAGCTTTACCCGCGCTTGTACCGTGCGATGGATGAC TGCAGGTGACGACGACCCGCAACGTGACGAGCACTCCGTTCGTGGACTGG TTCTGCGGCGGTCTCCAGTACCAGGTGGACCACCACCTCTTCCCCCAGAT CCCGCGGCACAACCTCCGTAAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7171:2531..3655+

>mRNA_L-elsbetiae_contig7171.16005.1 ID=mRNA_L-elsbetiae_contig7171.16005.1|Name=mRNA_L-elsbetiae_contig7171.16005.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig7171:2531..3655+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTACCTGGCGTACAACCTGGGTTTCGTCAAGTCGTTGGCGTTCTT
CGCTGTGGCGCAGTGTGGCTGCGGCCTCTTCCTGGCCCTCGTGTTCGGCC
TCGGCCACAACGGCATGGCCACCTACGACGCGGACGCGCGACCTGACTTC
TGGAAGCTCCAGATGGCCTACCTGGCGTACAACCTGGGTTTCGTCAAGTC
GTTGGCGTTCTTCGCTGTGGCGCAGTGTGGCTGCGGCCTCTTCCTGGCCC
TCGTGTTCGGCCTCGGCCACAACGGCATGGCCACCTACGACGCGGACGCG
CGACCTGACTTCTGGAAGCTCCAGGTGACGACGACCCGCAACGTGACGAG
CACTCCGTTCGTGGACTGGTTCTGCGGCGGTCTCCAGTACCAGGTGGACC
ACCACCTCTTCCCCCAGATCCCGCGGCACAACCTCCGTAAGGTAGTGACG
ACGACCCGCAACGTGACGAGCACTCCGTTCGTGGACTGGTTCTGCGGCGG
TCTCCAGTACCAGGTGGACCACCACCTCTTCCCCCAGATCCCGCGGCACA
ACCTCCGTAAGGTA
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