mRNA_L-elsbetiae_contig7170.16004.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7170.16004.1
Unique NamemRNA_L-elsbetiae_contig7170.16004.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.480e-55
Identity = 117/196 (59.69%), Postives = 141/196 (71.94%), Query Frame = 1 
Query:    1 MLRVALSAVAPRVAVANKSILPAA--RRSTLTALAS------------SHQGGRSLALDCVASAATASRSIAARKCPCRDMSSASAKLAAPGSVDSSATPGAGSGDGQSEGEMGSGGD-ARDPLTGEGIWMDEEDEPLVLEKPKKIQKFCGKVISDNMDKTIKVAIPHWYYVRKLGRRIVRYSKIMAHDEGNTANV 543
            MLR  L+ +APR   A++S   +   R +  TA A+            S QGG+SL LDC A  A   RS+  R+C  R+MSSASA +AAPG  D  A  G G G+GQ +GEMGS G  ARDP+TGEGIW+DEEDEPL LEKPKK+QKFCGKVISDNMDKTIKVA+P+WYYVR+LG+RI+RYSK+MAHDE N+ANV
Sbjct:    1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAA--AVTIRSVP-RRCSWREMSSASAHVAAPGGGDL-AMQGEGGGEGQ-QGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANV 191
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BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Match: A0A8J5XMV1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMV1_DIALT)

HSP 1 Score: 51.6 bits (122), Expect = 1.080e-5
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  397 KFCGKVISDNMDKTIKVAIPHWYYVRKLGRRIVRYSKIMAHDE 525
            K  G+VIS  M +++ V +P+W+ V++L  RIVR++K+MAHDE
Sbjct:    5 KLIGQVISAKMQQSVVVKVPYWHVVQRLQMRIVRHTKLMAHDE 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7170.16004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ53_ECTSI1.480e-5559.69Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A8J5XMV1_DIALT1.080e-548.84Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7170contigL-elsbetiae_contig7170:7069..9369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-02_006320.1
Exons3
Model size543
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7170.16004.1prot_L-elsbetiae_contig7170.16004.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7170 7069..9369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816797.223835-CDS-L-elsbetiae_contig7170:7068..74311622816797.223835-CDS-L-elsbetiae_contig7170:7068..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 7069..7431 +
1691683820.7322633-CDS-L-elsbetiae_contig7170:7068..74311691683820.7322633-CDS-L-elsbetiae_contig7170:7068..7431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 7069..7431 +
1622816797.2405953-CDS-L-elsbetiae_contig7170:8837..89181622816797.2405953-CDS-L-elsbetiae_contig7170:8837..8918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 8838..8918 +
1691683820.7468462-CDS-L-elsbetiae_contig7170:8837..89181691683820.7468462-CDS-L-elsbetiae_contig7170:8837..8918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 8838..8918 +
1622816797.257057-CDS-L-elsbetiae_contig7170:9270..93691622816797.257057-CDS-L-elsbetiae_contig7170:9270..9369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 9271..9369 +
1691683820.759537-CDS-L-elsbetiae_contig7170:9270..93691691683820.759537-CDS-L-elsbetiae_contig7170:9270..9369Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7170 9271..9369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7170.16004.1

>prot_L-elsbetiae_contig7170.16004.1 ID=prot_L-elsbetiae_contig7170.16004.1|Name=mRNA_L-elsbetiae_contig7170.16004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MLRVALSAVAPRVAVANKSILPAARRSTLTALASSHQGGRSLALDCVASA
ATASRSIAARKCPCRDMSSASAKLAAPGSVDSSATPGAGSGDGQSEGEMG
SGGDARDPLTGEGIWMDEEDEPLVLEKPKKIQKFCGKVISDNMDKTIKVA
IPHWYYVRKLGRRIVRYSKIMAHDEGNTANV
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mRNA from alignment at L-elsbetiae_contig7170:7069..9369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7170.16004.1 ID=mRNA_L-elsbetiae_contig7170.16004.1|Name=mRNA_L-elsbetiae_contig7170.16004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2301bp|location=Sequence derived from alignment at L-elsbetiae_contig7170:7069..9369+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGAGTGGCCTTGTCAGCAGTTGCTCCGAGGGTAGCGGTAGCTAA
CAAGTCGATTCTACCCGCAGCTCGACGGTCGACCCTCACGGCGTTGGCGT
CGTCCCACCAAGGCGGGCGGTCCCTAGCTCTCGACTGCGTTGCCTCTGCC
GCGACTGCTAGCAGATCGATTGCGGCAAGGAAATGCCCATGCCGCGACAT
GTCCTCGGCCAGTGCGAAGCTAGCTGCGCCGGGAAGCGTTGATTCCAGTG
CTACGCCGGGAGCAGGGAGTGGGGATGGACAGAGTGAGGGCGAGATGGGC
AGCGGTGGAGACGCGCGGGATCCCCTAACCGGCGAAGGGATTTGGATGGA
CGAAGAAGACGAGGTAGGCGGTGTTACCTGGTAGTTCTCGCTGTCTTGTG
TATCTCCTGCAGTTTGCCATGTTCAGTCCATTGTCTGAAGAAGAAGGGTG
CAGCGTTGCTCCGCATAGTGCACGCGCGCCAGCAGATATGTACATAACGT
AGACTATTTGTACCGTCTGCATGTCATATATGCGGCGAGACTGACTCTCC
AGCTCTCTGTTCCGTCAGGCTCATGCTTACAGCAGTAGTACCCTGCACAG
ACCTTCAGTGTGCCCTTGAGCTTTCTCCACGTGGGCACACGCCATGCAAA
TACGCTTCGTCGGCAGTTGTACGCCTCCATTGTATGCCATTTGCCCACAG
GAGCGGTGTGTGAGGGTCGCTGCCGAAGGAACATCGTCGGCGTGCTGCCG
GTTTCCCCCTCGCGGGGACTGCTGCCATGCCATTGTCATGTGCCGGATGT
TTTCTTGGTTTCCTCTCTGGTGTGGGTTTTAACTTATCCGTTGGTTCGAT
GATTGGTCCGCTTCCAAGGCTCGTAAGCAATGGGTAGTTTTGCTTATACC
CAAAGTCGATTATGTTTTTGTTGTTTGTCAGCTGGTTGTTTCAACTTGCG
AAATGAGCCCTTTTTACAGGCAGGTGGACGGCTGTTGTCTACAATGACCT
CTCCCCACCTCCGATGCTTCAGGGTAGCGCTGATATAGACTAGATGACAA
TCTGTGTGAGCGAAGGCGCAGCTTTTATGGGGAATACCCCTCGTACATGC
AGACACCGACCCATGGATGTTATGTTGGTGTGTTTGACTGCGTGATTGAA
TGCAGCTGTAGGTCCCCACCTCCGGGCTCAGGGTCCCGCCGTATAGCATA
TTTTCCCACAAGGGGTGTGTGCATGAAGCATAAAATAGCACGCTTTCAAG
GGCACGGGGTGCTTATGCTGCTGCAGCGCTGACTAAACTGAGATGGGCTG
GTCGTTCCTTGTCGCCCTCTACGTCGTTGATCAGATCAACTACCAAACAG
ATACATACAAAACCGTAGGTGACACAAGATACCACACCCCCTGGACCGAA
CTTTAGAGCTCCACTACCCCGCCGAAGAAGGTGCCAGCACCAAGCAACAC
ATGTTCGGACAGCCCTCGACTAGATATTTCCAATGCCACCTCTTTCGGCA
CTGGCACTCTTCTTGCTGAGGAGGAATCGAGCTTTGAAAGTCTGTCCAGG
GGGTGTGGTATCTTGTGTCACCTACGGTAGTATGTTCGCCCTCTACGTCG
TTGATCAGATCAACTACAAAACAGTTACAACAGTAGTTCCTCTTCGTCTG
TGGTTGCCCCTTTCCTTTCTCACACACCCCGTTCCCTCCCGCCTTTCGCG
TATGTACCTGCTGGCGTGTCTGGCGTCATTATCTCCTTGCCGTGCGGGGT
CGGTTTTCGCCTGGCACAGCCGTTAGTGCTGGAAAAGCCAAAGAAGATCC
AAAAGTTCTGCGGCAAGGTTATTTCGGACAACATGGACAAGACCATCAAG
GTGCGCAAAAGCTCATGTCAGTGTGACTTCTCAACATCGCATCTAGAAGT
ATCTTGTGTGCGGGATATCTCAATCCCTCTTCGCCACATGACGTGACGTT
TGACAGTCGACGCCGATTTCGTCTCAGCACGGGCAAGGCGATCGGATGAT
AGATAGTCTGTCTGCCTGCCTGCCGGGGTATGTTGTTCGTATGGTACTAC
TTGACGGCACTACAAAATCGTGACGACGGATCGATGTCTTCGACTGTTGC
TCGGGAACTTTTGTTTTTACCAATTCAACACAAGTGGTATCTGATATGAT
GGTAGCTGACTACTAACTATGGTGGTGCGTGGTAATTGCGATGAACGTGC
AGGTGGCTATCCCGCACTGGTACTACGTGAGGAAGCTCGGCCGAAGAATC
GTGCGGTACAGCAAGATTATGGCGCACGACGAGGGCAACACCGCCAATGT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7170:7069..9369+

>mRNA_L-elsbetiae_contig7170.16004.1 ID=mRNA_L-elsbetiae_contig7170.16004.1|Name=mRNA_L-elsbetiae_contig7170.16004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig7170:7069..9369+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGAGTGGCCTTGTCAGCAGTTGCTCCGAGGGTAGCGGTAGCTAA
CAAGTCGATTCTACCCGCAGCTCGACGGTCGACCCTCACGGCGTTGGCGT
CGTCCCACCAAGGCGGGCGGTCCCTAGCTCTCGACTGCGTTGCCTCTGCC
GCGACTGCTAGCAGATCGATTGCGGCAAGGAAATGCCCATGCCGCGACAT
GTCCTCGGCCAGTGCGAAGCTAGCTGCGCCGGGAAGCGTTGATTCCAGTG
CTACGCCGGGAGCAGGGAGTGGGGATGGACAGAGTGAGGGCGAGATGGGC
AGCGGTGGAGACGCGCGGGATCCCCTAACCGGCGAAGGGATTTGGATGGA
CGAAGAAGACGAGATGCTTCGAGTGGCCTTGTCAGCAGTTGCTCCGAGGG
TAGCGGTAGCTAACAAGTCGATTCTACCCGCAGCTCGACGGTCGACCCTC
ACGGCGTTGGCGTCGTCCCACCAAGGCGGGCGGTCCCTAGCTCTCGACTG
CGTTGCCTCTGCCGCGACTGCTAGCAGATCGATTGCGGCAAGGAAATGCC
CATGCCGCGACATGTCCTCGGCCAGTGCGAAGCTAGCTGCGCCGGGAAGC
GTTGATTCCAGTGCTACGCCGGGAGCAGGGAGTGGGGATGGACAGAGTGA
GGGCGAGATGGGCAGCGGTGGAGACGCGCGGGATCCCCTAACCGGCGAAG
GGATTTGGATGGACGAAGAAGACGAGCCGTTAGTGCTGGAAAAGCCAAAG
AAGATCCAAAAGTTCTGCGGCAAGGTTATTTCGGACAACATGGACAAGAC
CATCAAGCCGTTAGTGCTGGAAAAGCCAAAGAAGATCCAAAAGTTCTGCG
GCAAGGTTATTTCGGACAACATGGACAAGACCATCAAGGTGGCTATCCCG
CACTGGTACTACGTGAGGAAGCTCGGCCGAAGAATCGTGCGGTACAGCAA
GATTATGGCGCACGACGAGGGCAACACCGCCAATGTGGTGGCTATCCCGC
ACTGGTACTACGTGAGGAAGCTCGGCCGAAGAATCGTGCGGTACAGCAAG
ATTATGGCGCACGACGAGGGCAACACCGCCAATGTG
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