prot_L-elsbetiae_contig7168.15999.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7168.15999.1
Unique Nameprot_L-elsbetiae_contig7168.15999.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length158
Homology
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: D8LR71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR71_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 7.450e-37
Identity = 77/100 (77.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:   46 ALRVVGQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASKLAQCGITPGKTIMVLRQDCSEEVEAEASLNRRTEEAVQAASRLSAR 145
            ALR+VGQHKG +TL+L+ ATVLDLK +++  SGL  +GLKLLAGGKHL+DDA KLAQ GITPGKTIMVLRQD SE+VEAEA L RRTEEAVQAAS LSAR
Sbjct:    2 ALRIVGQHKGSITLDLENATVLDLKRSIAAASGLTASGLKLLAGGKHLKDDAGKLAQFGITPGKTIMVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSAR 101
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: A0A6H5KPY6_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.680e-8
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0 
Query:  112 MVLRQDCSEEVEAEASLNRRTEEAVQAASRLSARAARDIGDGGR 155
            MVLRQD SE+VEAEA L RRTEEAVQAAS LSARAARD+  GGR
Sbjct:    1 MVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSARAARDMASGGR 44
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: A0A1Y1HNB1_KLENI (Ubiquitin-associated (UBA)/TS-N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNB1_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 6.490e-6
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 0 
Query:   43 AMAALRVVGQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASK--LAQCGITPGKTIMVLR------QDCSEEVEAEASLNRRTEEAVQAASRLSARAARDIGD 152
            A  +LRV G   G VT+ L T  + +L+  V+  SG    G+KL+ GG+ L+DD     L+Q G+T    ++V +      QD + E E    +  RT+   +  S   A A R  GD
Sbjct:    9 ASVSLRVAGSWSGEVTVQLSTCRLSELRKKVAEASGFDEDGMKLICGGRMLKDDGGDKVLSQIGVTEKSKLLVTKVSAAQVQDMAAEAENARLMEERTQRLARLKSAADAMARRSGGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR71_ECTSI7.450e-3777.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY6_9PHAE7.680e-881.82UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1Y1HNB1_KLENI6.490e-633.05Ubiquitin-associated (UBA)/TS-N domain-containing ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 45..116
e-value: 7.2E-6
score: 35.5
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 63..114
e-value: 2.1E-8
score: 33.8
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 63..120
score: 12.77
NoneNo IPR availableGENE3D3.10.20.90coord: 44..117
e-value: 1.9E-11
score: 45.7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..158
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 62..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7168contigL-elsbetiae_contig7168:1555..4008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7168.15999.1mRNA_L-elsbetiae_contig7168.15999.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7168 1555..4010 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7168.15999.1 ID=prot_L-elsbetiae_contig7168.15999.1|Name=mRNA_L-elsbetiae_contig7168.15999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
VLALVRLLSSFYPSRGKVGFPSLGSCLILLVNLCSSLLPTWPAMAALRVV
GQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASKL
AQCGITPGKTIMVLRQDCSEEVEAEASLNRRTEEAVQAASRLSARAARDI
GDGGRGNS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-like_domsf