mRNA_L-elsbetiae_contig7168.15999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7168.15999.1
Unique NamemRNA_L-elsbetiae_contig7168.15999.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: D8LR71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR71_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 7.450e-37
Identity = 77/100 (77.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:  136 ALRVVGQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASKLAQCGITPGKTIMVLRQDCSEEVEAEASLNRRTEEAVQAASRLSAR 435
            ALR+VGQHKG +TL+L+ ATVLDLK +++  SGL  +GLKLLAGGKHL+DDA KLAQ GITPGKTIMVLRQD SE+VEAEA L RRTEEAVQAAS LSAR
Sbjct:    2 ALRIVGQHKGSITLDLENATVLDLKRSIAAASGLTASGLKLLAGGKHLKDDAGKLAQFGITPGKTIMVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSAR 101
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: A0A6H5KPY6_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.680e-8
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  334 MVLRQDCSEEVEAEASLNRRTEEAVQAASRLSARAARDIGDGGR 465
            MVLRQD SE+VEAEA L RRTEEAVQAAS LSARAARD+  GGR
Sbjct:    1 MVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSARAARDMASGGR 44
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BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Match: A0A1Y1HNB1_KLENI (Ubiquitin-associated (UBA)/TS-N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNB1_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 6.490e-6
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  127 AMAALRVVGQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASK--LAQCGITPGKTIMVLR------QDCSEEVEAEASLNRRTEEAVQAASRLSARAARDIGD 456
            A  +LRV G   G VT+ L T  + +L+  V+  SG    G+KL+ GG+ L+DD     L+Q G+T    ++V +      QD + E E    +  RT+   +  S   A A R  GD
Sbjct:    9 ASVSLRVAGSWSGEVTVQLSTCRLSELRKKVAEASGFDEDGMKLICGGRMLKDDGGDKVLSQIGVTEKSKLLVTKVSAAQVQDMAAEAENARLMEERTQRLARLKSAADAMARRSGGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7168.15999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR71_ECTSI7.450e-3777.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY6_9PHAE7.680e-881.82UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1Y1HNB1_KLENI6.490e-633.05Ubiquitin-associated (UBA)/TS-N domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7168contigL-elsbetiae_contig7168:1555..4010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue3.4e-32
Seed eggNOG ortholog2880.D8LR71
Preferred nameNUB1
Hectar predicted targeting categorysignal peptide
GOsGO:0002376,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010604,GO:0016567,GO:0019222,GO:0019538,GO:0019941,GO:0030162,GO:0030163,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0034097,GO:0034341,GO:0034612,GO:0036211,GO:0042176,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.positive regulation of ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2561@1,KOG2561@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size478
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7168.15999.1prot_L-elsbetiae_contig7168.15999.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7168 1555..4008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.640815-CDS-L-elsbetiae_contig7168:1554..18191622816796.640815-CDS-L-elsbetiae_contig7168:1554..1819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 1555..1819 +
1691683820.2498674-CDS-L-elsbetiae_contig7168:1554..18191691683820.2498674-CDS-L-elsbetiae_contig7168:1554..1819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 1555..1819 +
1622816796.6509683-CDS-L-elsbetiae_contig7168:3294..33401622816796.6509683-CDS-L-elsbetiae_contig7168:3294..3340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 3295..3340 +
1691683820.2652838-CDS-L-elsbetiae_contig7168:3294..33401691683820.2652838-CDS-L-elsbetiae_contig7168:3294..3340Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 3295..3340 +
1622816796.6631985-CDS-L-elsbetiae_contig7168:3845..40081622816796.6631985-CDS-L-elsbetiae_contig7168:3845..4008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 3846..4008 +
1691683820.273894-CDS-L-elsbetiae_contig7168:3845..40081691683820.273894-CDS-L-elsbetiae_contig7168:3845..4008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7168 3846..4008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7168.15999.1

>prot_L-elsbetiae_contig7168.15999.1 ID=prot_L-elsbetiae_contig7168.15999.1|Name=mRNA_L-elsbetiae_contig7168.15999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
VLALVRLLSSFYPSRGKVGFPSLGSCLILLVNLCSSLLPTWPAMAALRVV
GQHKGLVTLNLDTATVLDLKNAVSRDSGLPVAGLKLLAGGKHLRDDASKL
AQCGITPGKTIMVLRQDCSEEVEAEASLNRRTEEAVQAASRLSARAARDI
GDGGRGNS
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mRNA from alignment at L-elsbetiae_contig7168:1555..4010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7168.15999.1 ID=mRNA_L-elsbetiae_contig7168.15999.1|Name=mRNA_L-elsbetiae_contig7168.15999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2456bp|location=Sequence derived from alignment at L-elsbetiae_contig7168:1555..4010+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTTAGCACTCGTGCGCTTGCTGAGCTCTTTTTATCCGTCTCGAGGGAA
GGTTGGCTTCCCCTCTCTCGGAAGTTGTTTAATACTTCTCGTCAACCTTT
GCTCTTCTTTGCTGCCAACTTGGCCCGCAATGGCGGCGTTGAGGGTCGTT
GGGCAGCACAAGGGCTTGGTCACACTAAACCTGGACACCGCGACCGTGCT
GGACCTCAAGAATGCTGTGTCTAGGGACTCCGGTCTGCCAGTTGCCGGGT
TGAAACTTCTAGCAGGTATGTACTCGAAAACTTTTGTGCAACATAACATG
TGTAAGCGCAGCATTTGCGGAGAGATCTTTTGCGACTTCGCCCTTTTTTT
TTCTCTCTCTCGGGCGCTCGGGCGCCATCATCGGCCGAGTCTGCTGATGA
GAGAGGGCAAACCAGCGCGCAATATGGTGTCGCATTTTTTCCGCATTTCT
TGTCTTGGGGGTATGGGTTATTTTTACTTTCTTACTCAAGTACGCCGCCC
ACCCGGAGAGAGAGAGAGAGAGAGCGCGCGCTCCGAAGGTACTATCTAGA
TATTGCAGATGATCTACAAAGGGGCTTCGCGGCGGGCCGCTGAGGCGTCC
CACCGCTCCGCTGTAGGCTGGGAATATTCGATGCCACTTGGCGTGACGTG
TGAAAGTTAAAGTTGCATCTAGGTTTATTTTCACCGGCGGTGTCATCATA
ATAGTGCACCGTCTTTTTCTAGAACGGCCCGCATGCGGCTGTATGTAACG
GTTTTACGTATGTAGCAGTCGAAAGTTCAACATACCGATCATACCCACGT
AGACTATTAACTTTGCTAGTGGCAGGGAATCCTGCAAATGTTGGTCTGAA
AAGACTCAGGTGTGTTGCTGCGTCGCTGCGTCGCTGCAATCCGGCGCGAA
TCGCGTTAACCCATCCACGCCAAGAGAGGGCCGAAACGTTAGGAAGCCCA
CCCTAGCGTGGCTACATGCGAATGAATATCGGTTTAAAAAACCAGGTGGA
TATTGTATATTGTACCGATCGGCCTCGCTGCAATCCGCATTTTACCGCCG
GAACTCTGTGCTGCCCCATTTTACCGCCGAGACTACTGCTGTCCCGCGGT
TGCATCACGGATTATGTGCGCGATTTATAGTCTATACGCTTGCTGCGCTC
TTTTACCGATCCACGCCAGAAGAGGGCCGAAAAGTCGGTAAGCCCGCCCT
CGCGTGGCTATGCTAGTGGCAGAGGTGGCCCATGTTAGCCTCAACTACGT
AGCCTTAGCCTCAACTGTGAGACCTAGTTTCCTCTCGAGTCCTGTGAGGT
AGGAAACGTTTCGCAAGCTGTCAAAAAAGCTTGCCGTGAAGAGACTGATC
ATTACCGCAAGTGTCTACTCTCTGTTACGCTACGCGACGCCCGTCCTGAG
AGCGAGTAGCGTGCGGGAAAGGTCTTCGCAGCTCAGGTGTACCGATAGCC
GCAAGGCTGGCCTTGAAACGAGGTCTACCGGCGAAAAAATCGCAACAACA
AGAACAGGTCTAGAGCGCCCAGAGCACAGGGACGCCATTTCGCGAGCTCT
CAGGGCCCGAGAGCCCCAAGTATGAACGTAAACTGTTCATGTAACAGACG
GGCAGCCGGGGGCGGGAGGGGTGCAGATCACCGCGGTTGCAATCGTTCAA
TTTCAAAGTCGAGGTTTGTTCTGTTATAAGCTCTTCGTTTGCCTCCCGGC
TTCGCCCTTCGCTCGGCGACACGTCTCCGTTCTTTTCCAGGAGGCAAGCA
CCTGAGAGACGATGCTTCCAAGCTGGCTCAGTGCGGGTGAGTTGCAGAGA
GAAGTGCATGCACGACTACGAAGTCAGTAAGGACCATAACATACATGCGC
TCACCGCTTAGGGTTGCCCGCGTCAGGACCTAACCAGTTTATTGACGCGA
CTTTTTCCCATCTTCGCTGGGGCCTTCTGATCTTCTCATCTTTTTCTGGT
TGCTTTTTTGGTCGCGCGTGTCGCGCGAAGCACACCAAGTACCGAACGGG
CATCATCTCTCCCACCGAAGTACCTCTCAATATTGCTTCTACCCTACATA
CGTAGTCTACACCGAGTCCACCGTAAGCATGAGTGCCTCGGCGGGTGGAA
ACGACGACCTGACCGACGTACGCACAAGGTTTGCACCATTTGTCTTCGTT
TTCTGGCTTCGCCACGCCACGCGCGGCGAGCGAGACCAGCTCGCTCGGCG
GCCCGAAACCACTCTCATCCTCCCCCCCAAAAAAATGAGCACACTCACAA
CACACATACATAGACCCCGCTCCCGCCCAAAACGCCTCCAGCATCACCCC
GGGGAAGACCATCATGGTCCTGCGCCAGGATTGCTCGGAGGAGGTCGAGG
CGGAGGCAAGCCTGAACCGCAGGACGGAGGAGGCCGTGCAGGCGGCTTCT
CGCCTCTCCGCCCGGGCCGCGCGGGACATCGGAGACGGCGGGAGGGGGAA
CTCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7168:1555..4010+

>mRNA_L-elsbetiae_contig7168.15999.1 ID=mRNA_L-elsbetiae_contig7168.15999.1|Name=mRNA_L-elsbetiae_contig7168.15999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig7168:1555..4010+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTTAGCACTCGTGCGCTTGCTGAGCTCTTTTTATCCGTCTCGAGGGAA
GGTTGGCTTCCCCTCTCTCGGAAGTTGTTTAATACTTCTCGTCAACCTTT
GCTCTTCTTTGCTGCCAACTTGGCCCGCAATGGCGGCGTTGAGGGTCGTT
GGGCAGCACAAGGGCTTGGTCACACTAAACCTGGACACCGCGACCGTGCT
GGACCTCAAGAATGCTGTGTCTAGGGACTCCGGTCTGCCAGTTGCCGGGT
TGAAACTTCTAGCAGGTCTTAGCACTCGTGCGCTTGCTGAGCTCTTTTTA
TCCGTCTCGAGGGAAGGTTGGCTTCCCCTCTCTCGGAAGTTGTTTAATAC
TTCTCGTCAACCTTTGCTCTTCTTTGCTGCCAACTTGGCCCGCAATGGCG
GCGTTGAGGGTCGTTGGGCAGCACAAGGGCTTGGTCACACTAAACCTGGA
CACCGCGACCGTGCTGGACCTCAAGAATGCTGTGTCTAGGGACTCCGGTC
TGCCAGTTGCCGGGTTGAAACTTCTAGCAGGAGGCAAGCACCTGAGAGAC
GATGCTTCCAAGCTGGCTCAGTGCGGGAGGCAAGCACCTGAGAGACGATG
CTTCCAAGCTGGCTCAGTGCGGCATCACCCCGGGGAAGACCATCATGGTC
CTGCGCCAGGATTGCTCGGAGGAGGTCGAGGCGGAGGCAAGCCTGAACCG
CAGGACGGAGGAGGCCGTGCAGGCGGCTTCTCGCCTCTCCGCCCGGGCCG
CGCGGGACATCGGAGACGGCGGGAGGGGGAACTCGCATCACCCCGGGGAA
GACCATCATGGTCCTGCGCCAGGATTGCTCGGAGGAGGTCGAGGCGGAGG
CAAGCCTGAACCGCAGGACGGAGGAGGCCGTGCAGGCGGCTTCTCGCCTC
TCCGCCCGGGCCGCGCGGGACATCGGAGACGGCGGGAGGGGGAACTCG
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