mRNA_L-elsbetiae_contig7164.15996.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7164.15996.1
Unique NamemRNA_L-elsbetiae_contig7164.15996.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7164.15996.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.360e-22
Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 3 
Query:   33 RGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNKANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAMTALSTPPV 335
            RGGS RAGVNK FLLNTVHGLKSHNKREEEEDCWRQH L+Q    +A  R  + +A  R RR+   D    +AS  S+VD R+FWAE+K + MTA +TP +
Sbjct:    8 RGGSGRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQ----RARERLLAHDA-NRNRRNVPADGGDTSASHASDVDARRFWAERKERTMTA-TTPAI 102
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BLAST of mRNA_L-elsbetiae_contig7164.15996.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.990e-21
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3 
Query:   33 RGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNKANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAMTALSTPPV 335
            RGGS RAGVNK FLLNTVHGL+SHNKREEEEDCWRQ+ L+Q    +A  R  + +A  R R+    D    +AS  S+VD R+FWAE+K +AMTA +TP +
Sbjct:   19 RGGSSRAGVNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQ----RARERLLAHDA-NRNRQKFPADGGDTSASHASDVDARRFWAERKERAMTA-TTPAI 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7164.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY1_ECTSI1.360e-2259.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX3_9PHAE6.990e-2157.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7164contigL-elsbetiae_contig7164:7747..9357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002810.1
Exons2
Model size1066
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7164.15996.1prot_L-elsbetiae_contig7164.15996.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7164 8711..9346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.280519-UTR-L-elsbetiae_contig7164:7746..78271622816796.280519-UTR-L-elsbetiae_contig7164:7746..7827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 7747..7827 -
1691683820.0155888-UTR-L-elsbetiae_contig7164:7746..78271691683820.0155888-UTR-L-elsbetiae_contig7164:7746..7827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 7747..7827 -
1622816796.2914085-UTR-L-elsbetiae_contig7164:8372..87101622816796.2914085-UTR-L-elsbetiae_contig7164:8372..8710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 8373..8710 -
1691683820.0271318-UTR-L-elsbetiae_contig7164:8372..87101691683820.0271318-UTR-L-elsbetiae_contig7164:8372..8710Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 8373..8710 -
1622816796.3137252-UTR-L-elsbetiae_contig7164:9346..93571622816796.3137252-UTR-L-elsbetiae_contig7164:9346..9357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 9347..9357 -
1691683820.048545-UTR-L-elsbetiae_contig7164:9346..93571691683820.048545-UTR-L-elsbetiae_contig7164:9346..9357Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7164 9347..9357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816796.301646-CDS-L-elsbetiae_contig7164:8710..93461622816796.301646-CDS-L-elsbetiae_contig7164:8710..9346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7164 8711..9346 -
1691683820.037942-CDS-L-elsbetiae_contig7164:8710..93461691683820.037942-CDS-L-elsbetiae_contig7164:8710..9346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7164 8711..9346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7164.15996.1

>prot_L-elsbetiae_contig7164.15996.1 ID=prot_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MQGQAGGRGGSPRAGVNKKFLLNTVHGLKSHNKREEEEDCWRQHNLDQNK
ANKANGRSRSREACRRERRDNSTDAVHEAASPISEVDTRQFWAEQKRKAM
TALSTPPVGAPLTVGRCKSRERARSDGSADGATLSDDDSKKKRRRKGEKK
AKKKKKRKRERYNSGSSSRSSSDSEVDDESRLDGGKASDKGHRQRKRKKS
KKDSSRKKSTT*
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mRNA from alignment at L-elsbetiae_contig7164:7747..9357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7164.15996.1 ID=mRNA_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1611bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:7747..9357- (Laminarionema elsbetiae ELsaHSoW15)
CTTTGTTGGCTATGCAGGGGCAAGCAGGAGGAAGGGGAGGGAGTCCTCGT
GCGGGTGTCAACAAGAAGTTTCTCCTGAACACGGTGCACGGACTGAAGTC
GCATAACAAGCGGGAGGAGGAGGAGGACTGCTGGAGACAGCACAACTTGG
ACCAGAATAAGGCGAATAAGGCGAACGGGCGGAGCCGTTCTCGCGAAGCC
TGCCGCCGAGAGCGACGCGATAACTCGACGGATGCGGTACATGAAGCAGC
GAGCCCCATCTCCGAGGTCGATACTCGCCAATTCTGGGCGGAGCAGAAGC
GAAAGGCGATGACTGCTCTGTCGACTCCGCCTGTCGGCGCTCCGCTCACA
GTCGGCCGGTGTAAGTCAAGAGAGCGAGCGCGTTCCGACGGAAGCGCCGA
CGGGGCGACCCTTTCCGATGATGATAGTAAGAAGAAGAGGAGGAGAAAGG
GAGAAAAGAAGGCCAAGAAAAAGAAAAAACGAAAGCGGGAGAGATATAAC
AGCGGCAGCAGCAGCAGAAGTTCGTCAGACAGCGAGGTCGATGATGAGAG
CCGGCTGGACGGGGGCAAAGCCAGCGACAAAGGTCACCGCCAAAGAAAGC
GGAAGAAGTCAAAGAAAGACAGCAGTAGAAAGAAGAGCACAACATGATAA
CTACGCGGCCAAGGCGACTGGCAGTGAGTTGGCCGTGAGTTGGAGCTGAG
ACAAAGGTCGTCGCCGCCAAAGTAGGCGGGAGAAGAGAAACACAGCAGTA
TGTACTCTACATACCATGGTATGTAGTACCTAGGGAGGACGAGCACGGCA
TGAGAACTACGCGGCGGCTGTGATTTGGAGCTTGCGCTCTACTTCGACGG
AATGGAGCAGGATATGTTCTTCGGTTGGTCTTCGGGCAGTGAGAGGCGAG
TGGAGCTCGAACCTACATACACAGCATGGACAGAGGCCGGAAAATTGGCT
ATTGACTGGGAGATTTGTAACTTCTGGTCTGCTAGGTACGTGCTGGTTGT
GGCGTGGTGGAACTTTGACGCGTTTGTTTACATATGTGCAGAATGCGGTT
AACTATTTACTAGACTATAGGCACAAACGTGTTTTCCCAACGTGTAACGC
AAAAGCAAATAGTTTTGGAGTCGTTGTACTTGGGTAAGCGCCCGCGAGCA
AGCCTTGCAACTACTGTGATTCCACGCTTGCTCGCAAATACTGATCAATG
TTTGCGCGGCGCTGCGGAAGCGGTTCAACTTGTGCCAGAAACGATGTGAT
TTTAGTCAAATAACTCCATGGGGAGGGCTCCCCGCTCGGGTGTTGTCATA
ATTCCGTCTTACACCAAAGTTCTCCGCGGCAAGGGAGATTTCGATATTTC
CTCCCATGAACACGAGGAACCCTCGTTGGGGGGCCAGTCGTGCTTTCGGG
TGGCATATTCGCTCTGCACACATTGCGTACCGCGGAAGACTGCGCGTGTA
GGTTTAATTGGCGCGCATATGGAATGTTGCAGTTAGTAACTGACCCTGAT
TTTCATTTCTATTCACTCTCTCCGGGATAGCGCCGTTGCTGAGGGACCAT
GCTGGTGGAGCCAGGCGTTGCAGCAGAAATGCGAATTGGCCTGCCGCTGG
AGCTGCCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7164:7747..9357-

>mRNA_L-elsbetiae_contig7164.15996.1 ID=mRNA_L-elsbetiae_contig7164.15996.1|Name=mRNA_L-elsbetiae_contig7164.15996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1272bp|location=Sequence derived from alignment at L-elsbetiae_contig7164:7747..9357- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGGCAAGCAGGAGGAAGGGGAGGGAGTCCTCGTGCGGGTGTCAA
CAAGAAGTTTCTCCTGAACACGGTGCACGGACTGAAGTCGCATAACAAGC
GGGAGGAGGAGGAGGACTGCTGGAGACAGCACAACTTGGACCAGAATAAG
GCGAATAAGGCGAACGGGCGGAGCCGTTCTCGCGAAGCCTGCCGCCGAGA
GCGACGCGATAACTCGACGGATGCGGTACATGAAGCAGCGAGCCCCATCT
CCGAGGTCGATACTCGCCAATTCTGGGCGGAGCAGAAGCGAAAGGCGATG
ACTGCTCTGTCGACTCCGCCTGTCGGCGCTCCGCTCACAGTCGGCCGGTG
TAAGTCAAGAGAGCGAGCGCGTTCCGACGGAAGCGCCGACGGGGCGACCC
TTTCCGATGATGATAGTAAGAAGAAGAGGAGGAGAAAGGGAGAAAAGAAG
GCCAAGAAAAAGAAAAAACGAAAGCGGGAGAGATATAACAGCGGCAGCAG
CAGCAGAAGTTCGTCAGACAGCGAGGTCGATGATGAGAGCCGGCTGGACG
GGGGCAAAGCCAGCGACAAAGGTCACCGCCAAAGAAAGCGGAAGAAGTCA
AAGAAAGACAGCAGTAGAAAGAAGAGCACAACATGAATGCAGGGGCAAGC
AGGAGGAAGGGGAGGGAGTCCTCGTGCGGGTGTCAACAAGAAGTTTCTCC
TGAACACGGTGCACGGACTGAAGTCGCATAACAAGCGGGAGGAGGAGGAG
GACTGCTGGAGACAGCACAACTTGGACCAGAATAAGGCGAATAAGGCGAA
CGGGCGGAGCCGTTCTCGCGAAGCCTGCCGCCGAGAGCGACGCGATAACT
CGACGGATGCGGTACATGAAGCAGCGAGCCCCATCTCCGAGGTCGATACT
CGCCAATTCTGGGCGGAGCAGAAGCGAAAGGCGATGACTGCTCTGTCGAC
TCCGCCTGTCGGCGCTCCGCTCACAGTCGGCCGGTGTAAGTCAAGAGAGC
GAGCGCGTTCCGACGGAAGCGCCGACGGGGCGACCCTTTCCGATGATGAT
AGTAAGAAGAAGAGGAGGAGAAAGGGAGAAAAGAAGGCCAAGAAAAAGAA
AAAACGAAAGCGGGAGAGATATAACAGCGGCAGCAGCAGCAGAAGTTCGT
CAGACAGCGAGGTCGATGATGAGAGCCGGCTGGACGGGGGCAAAGCCAGC
GACAAAGGTCACCGCCAAAGAAAGCGGAAGAAGTCAAAGAAAGACAGCAG
TAGAAAGAAGAGCACAACATGA
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