mRNA_L-elsbetiae_contig716.15990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig716.15990.1
Unique NamemRNA_L-elsbetiae_contig716.15990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig716.15990.1 vs. uniprot
Match: D7FKP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP8_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 6.450e-56
Identity = 151/318 (47.48%), Postives = 182/318 (57.23%), Query Frame = 1 
Query:    1 IRARLEKKLQNKQKASFAFNFAVDSDTHDLQ---------GREQGSFRFDFNP-----PSTTGVDRGAKAIKTKHSGGDDNPRAAEDVVVQIEEKRAQPNTKNKSKKKGAGKXXXXXXXKGKSAEKEGIRDLTG----GQQPQQDLGVTELP---GSSTMGDGGGQTNNCC---LPRVVERESKPICGDAGQGSATSDGVEEKSNSETLRPPPGFTLESWKDPALSGEERRRRRFGSGVRNMAAIQRSCDARREMVAGGEPEPEEFLGRHGG-LVRPDRDRAPAHGPVQAAVPGDTAGG-PSVFSFGFDIGISFNGGS 876
            +RARLEKKLQ KQK  FAFNFAVDSD  + +           E+GSF F+FNP     P+      GAK    + SG   + RAA+D +  +E+  AQP+   K K+ G   XXXXXXX     E +  R+       G+ P+QD  V + P   G  T+GDGGG+  +     LP     +S P               E +     LRPPPGFTLESWKDPA++GEERRRRRFGSGVRNM AIQRSCDARR ++  GE   E+   R GG L RP  DRA   G V A  PG T GG  SVF+FGFDIGISF+GGS
Sbjct:   38 VRARLEKKLQVKQKTGFAFNFAVDSDADEQRQGGGQEGGDAGERGSFCFNFNPADASAPTCVPESNGAK----RRSGDASSLRAAQDFLTVVEKSGAQPS--GKKKRTGXXXXXXXXXXXXGKGEAQQSREQKSQDPVGEGPEQD-NVVDCPTFSGHCTVGDGGGEATSSAVASLPAAXXXDSSPK-------------REHRQRPPGLRPPPGFTLESWKDPAITGEERRRRRFGSGVRNMVAIQRSCDARRGLIPDGEVGEEKLPERQGGGLGRPGCDRA--RGMVGAGAPGSTTGGGSSVFAFGFDIGISFDGGS 333
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BLAST of mRNA_L-elsbetiae_contig716.15990.1 vs. uniprot
Match: A0A836CBN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-5
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  565 PGFTLESWKDPALSGEERRRRRFGSGVRNMAAIQRSCDA 681
            PG +LESWKDP L+  ERR+ R+GSGVRN+AAIQR   A
Sbjct:  122 PGLSLESWKDPTLTEAERRKLRYGSGVRNIAAIQRRTKA 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig716.15990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKP8_ECTSI6.450e-5647.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBN0_9STRA1.380e-566.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig716contigL-elsbetiae_contig716:24446..25538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001670.1
Exons1
Model size1093
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig716.15990.1prot_L-elsbetiae_contig716.15990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig716 24860..25324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.89205-UTR-L-elsbetiae_contig716:24445..248591622816795.89205-UTR-L-elsbetiae_contig716:24445..24859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 24446..24859 +
1691683819.7400982-UTR-L-elsbetiae_contig716:24445..248591691683819.7400982-UTR-L-elsbetiae_contig716:24445..24859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 24446..24859 +
1622816795.9147093-UTR-L-elsbetiae_contig716:25324..255381622816795.9147093-UTR-L-elsbetiae_contig716:25324..25538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 25325..25538 +
1691683819.7657459-UTR-L-elsbetiae_contig716:25324..255381691683819.7657459-UTR-L-elsbetiae_contig716:25324..25538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 25325..25538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.9037795-CDS-L-elsbetiae_contig716:24859..253241622816795.9037795-CDS-L-elsbetiae_contig716:24859..25324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 24860..25324 +
1691683819.7547936-CDS-L-elsbetiae_contig716:24859..253241691683819.7547936-CDS-L-elsbetiae_contig716:24859..25324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 24860..25324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig716.15990.1

>prot_L-elsbetiae_contig716.15990.1 ID=prot_L-elsbetiae_contig716.15990.1|Name=mRNA_L-elsbetiae_contig716.15990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MGDGGGQTNNCCLPRVVERESKPICGDAGQGSATSDGVEEKSNSETLRPP
PGFTLESWKDPALSGEERRRRRFGSGVRNMAAIQRSCDARREMVAGGEPE
PEEFLGRHGGLVRPDRDRAPAHGPVQAAVPGDTAGGPSVFSFGFDIGISF
NGGS*
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mRNA from alignment at L-elsbetiae_contig716:24446..25538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig716.15990.1 ID=mRNA_L-elsbetiae_contig716.15990.1|Name=mRNA_L-elsbetiae_contig716.15990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1093bp|location=Sequence derived from alignment at L-elsbetiae_contig716:24446..25538+ (Laminarionema elsbetiae ELsaHSoW15)
ATACGGGCACGGTTGGAGAAGAAGCTGCAGAACAAGCAAAAGGCTTCATT
TGCTTTCAATTTCGCGGTGGACAGCGATACACATGACCTGCAGGGACGGG
AGCAAGGATCATTTCGTTTCGACTTCAACCCACCAAGCACCACCGGCGTT
GATAGGGGCGCAAAAGCAATCAAGACCAAGCACAGCGGAGGAGATGACAA
TCCACGCGCAGCTGAAGATGTTGTTGTCCAGATCGAGGAAAAAAGAGCAC
AGCCCAATACGAAGAACAAGTCGAAGAAGAAGGGAGCGGGCAAGAAGAAG
AAGGGCGGCAAGAGGAAGGGAAAGTCTGCAGAAAAAGAGGGAATCCGAGA
TCTCACTGGGGGGCAGCAACCGCAGCAGGACTTGGGGGTCACGGAGCTAC
CAGGCTCTTCCACGATGGGTGACGGCGGTGGCCAAACGAACAACTGCTGT
CTTCCCCGTGTAGTGGAAAGAGAATCGAAGCCGATTTGTGGCGACGCGGG
ACAAGGGTCCGCCACATCGGATGGCGTCGAGGAGAAGAGCAACTCGGAAA
CGCTGCGCCCCCCGCCCGGCTTCACTTTGGAGAGTTGGAAGGATCCTGCC
CTGAGCGGAGAGGAGCGAAGGAGGCGGAGGTTTGGTAGCGGAGTGAGAAA
CATGGCAGCCATTCAACGCAGCTGTGACGCGCGACGAGAGATGGTTGCAG
GAGGGGAGCCAGAACCAGAAGAGTTCCTAGGCAGACATGGAGGCTTGGTC
AGGCCTGATCGCGACAGAGCACCTGCGCATGGACCGGTTCAAGCCGCAGT
TCCTGGCGATACTGCTGGAGGGCCCTCGGTGTTTTCGTTCGGGTTTGACA
TTGGCATATCTTTCAACGGTGGCAGCTAGCTAGATATTGCGTGTCGCTTT
TTTATTCTTAGATGTAGATACATATACAAATTGGTGTCTGGGAACTTCTG
TTCCGAAATCTGAATCAGTAGGCTGTCGGTAGGCTGTCGGCCTCCAATTG
CTCAAAAAGATGTCAGTATGACAGCAGTTGTTTTGAGCATGGCAGCACAT
GCCAAGAGACTGGACAGCTATTGTACCTGATGAGCACAGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig716:24446..25538+

>mRNA_L-elsbetiae_contig716.15990.1 ID=mRNA_L-elsbetiae_contig716.15990.1|Name=mRNA_L-elsbetiae_contig716.15990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig716:24446..25538+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGACGGCGGTGGCCAAACGAACAACTGCTGTCTTCCCCGTGTAGT
GGAAAGAGAATCGAAGCCGATTTGTGGCGACGCGGGACAAGGGTCCGCCA
CATCGGATGGCGTCGAGGAGAAGAGCAACTCGGAAACGCTGCGCCCCCCG
CCCGGCTTCACTTTGGAGAGTTGGAAGGATCCTGCCCTGAGCGGAGAGGA
GCGAAGGAGGCGGAGGTTTGGTAGCGGAGTGAGAAACATGGCAGCCATTC
AACGCAGCTGTGACGCGCGACGAGAGATGGTTGCAGGAGGGGAGCCAGAA
CCAGAAGAGTTCCTAGGCAGACATGGAGGCTTGGTCAGGCCTGATCGCGA
CAGAGCACCTGCGCATGGACCGGTTCAAGCCGCAGTTCCTGGCGATACTG
CTGGAGGGCCCTCGGTGTTTTCGTTCGGGTTTGACATTGGCATATCTTTC
AACGGTGGCAGCTAGATGGGTGACGGCGGTGGCCAAACGAACAACTGCTG
TCTTCCCCGTGTAGTGGAAAGAGAATCGAAGCCGATTTGTGGCGACGCGG
GACAAGGGTCCGCCACATCGGATGGCGTCGAGGAGAAGAGCAACTCGGAA
ACGCTGCGCCCCCCGCCCGGCTTCACTTTGGAGAGTTGGAAGGATCCTGC
CCTGAGCGGAGAGGAGCGAAGGAGGCGGAGGTTTGGTAGCGGAGTGAGAA
ACATGGCAGCCATTCAACGCAGCTGTGACGCGCGACGAGAGATGGTTGCA
GGAGGGGAGCCAGAACCAGAAGAGTTCCTAGGCAGACATGGAGGCTTGGT
CAGGCCTGATCGCGACAGAGCACCTGCGCATGGACCGGTTCAAGCCGCAG
TTCCTGGCGATACTGCTGGAGGGCCCTCGGTGTTTTCGTTCGGGTTTGAC
ATTGGCATATCTTTCAACGGTGGCAGCTAG
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