mRNA_L-elsbetiae_contig716.15989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig716.15989.1
Unique NamemRNA_L-elsbetiae_contig716.15989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig716.15989.1 vs. uniprot
Match: D7FSV5_ECTSI (Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.260e-5
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:  356 WPLPFSLTSLLWRIDSVRTAIAKNFKLE 439
            WPLPFSLT LLWRIDSVRTAIAK  KLE
Sbjct:  283 WPLPFSLTFLLWRIDSVRTAIAKKLKLE 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig716.15989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSV5_ECTSI5.260e-589.29Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig716contigL-elsbetiae_contig716:17622..19094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFatty acid desaturase
Ec32 orthologEc-19_001920.1
Exons2
Model size749
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig716.15989.1prot_L-elsbetiae_contig716.15989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig716 17941..18835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.8215117-UTR-L-elsbetiae_contig716:17621..179401622816795.8215117-UTR-L-elsbetiae_contig716:17621..17940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 17622..17940 +
1691683819.6782994-UTR-L-elsbetiae_contig716:17621..179401691683819.6782994-UTR-L-elsbetiae_contig716:17621..17940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 17622..17940 +
1622816795.857036-UTR-L-elsbetiae_contig716:18835..190941622816795.857036-UTR-L-elsbetiae_contig716:18835..19094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 18836..19094 +
1691683819.7275133-UTR-L-elsbetiae_contig716:18835..190941691683819.7275133-UTR-L-elsbetiae_contig716:18835..19094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig716 18836..19094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.8336208-CDS-L-elsbetiae_contig716:17940..180601622816795.8336208-CDS-L-elsbetiae_contig716:17940..18060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 17941..18060 +
1691683819.699671-CDS-L-elsbetiae_contig716:17940..180601691683819.699671-CDS-L-elsbetiae_contig716:17940..18060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 17941..18060 +
1622816795.8471065-CDS-L-elsbetiae_contig716:18784..188351622816795.8471065-CDS-L-elsbetiae_contig716:18784..18835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 18785..18835 +
1691683819.7152157-CDS-L-elsbetiae_contig716:18784..188351691683819.7152157-CDS-L-elsbetiae_contig716:18784..18835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig716 18785..18835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig716.15989.1

>prot_L-elsbetiae_contig716.15989.1 ID=prot_L-elsbetiae_contig716.15989.1|Name=mRNA_L-elsbetiae_contig716.15989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MMAATGRGGSSNWPLPFSLTSLLWRIDSVRTAIAKNFKLETTCLLGRMGL
SHRRSG*
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mRNA from alignment at L-elsbetiae_contig716:17622..19094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig716.15989.1 ID=mRNA_L-elsbetiae_contig716.15989.1|Name=mRNA_L-elsbetiae_contig716.15989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1473bp|location=Sequence derived from alignment at L-elsbetiae_contig716:17622..19094+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTCTATAGCGTATTTCTACACAACCAGGAGGGTACCACTGCCGAAAA
GGGTGGTCTTCGAAACGTCTTGTCGGGGGCTTTCCAGAGAGATATCAGTT
AGTGTTCGCACCCTAACCCGCATGATTACGGCCTCCTCCACCCCGGTTCC
CTCGCATTATATTCCACCAACCCCTTCTCTCCAAGAGCGGACTTCCGTGC
CGTGACGGAAAACGTAAACACAACGGAACCGATACAACAAAAACAACCTC
TTGGAGCAATTGTTTCTGTTTTGTCGTGCGGTGCGGAGGTTGAGCCGGCG
CTGTGGCTGTGGGCCCCCGATGATGGCCGCGACCGGCCGTGGAGGAAGCT
CCAACTGGCCCCTTCCCTTCTCCCTGACCTCCTTGCTCTGGCGCATAGAC
TCCGTCAGGACCGCCATCGCCAAGAACTTCAAGCTTGAGGTGCGGCCGGT
TGGTTTGTTGCTGAATGCCGCGGGCGGGCTTCTCTTCACGGAGTAAATTT
GCACCGGTCTGTTTTTTTTGAAAGACCGGTCGGGCTTGTTGTCGTGATGC
TAAAGGCTTCTTGGCTTCGCTTTCTCCGTTACGGCGCCCCCTCTCCACCT
CGAAACTTGTCGACCGCCTGCTTGTTCTAGGGGCCAGGCTGCTGTCTGTC
TGTCTGGGAATGTTTTAATGTTTCTGGGAGGAATGTTTGCGGGCAGCTGA
TTAATTAATGCCGTTTGATTGGTACCATACATTATATACATGTGTTGACT
ATCTTTCTCCCTTTTCTCGGTTTGTCACGTAGGCGCAGGCTGAACGCATA
ACCGCGGATGTTTTGTAGCAAAATTAATAAAAAAAAAACGCGCGCGAAAT
GCGGACCGTGTCACTGGTGCTCATTGTACGTGTATTGCTGCACCGTTATC
GCTGCCTTTGCAAAGCTGGCCCTTCGTATGCAAGCAGATGACATGCTTTG
TGCGATCTGTCCATTAGAGTCCGATCTAGATCAGGCAGTACGATGTTAGG
CACGTTCGATCCACCCTGCTTCGCAGTACACTATCGGCGTTTCTGCCACC
CGCTACCGTGTGCCTTTTACACGCTGCTTGAACCCCTGTTCACCGAATTC
GTCCCTGAATTGCTGTTCTGCATCATGTTTCTGTGTTGCGTGCGAAATTC
CGCCCCCGTGCAGACAACGTGTTTACTGGGACGAATGGGATTGAGTCATC
GACGTTCAGGGTAGTACGTGGACGAACAACGAGCTTCCCAGCTCGGGCGT
TTGCCTTGACATCGTGACTTCCGATGATGACATACCCCTTCCTATCAGCG
CCTTCAGGGCGTCCGACTGGCTGACATTGGAGTGCTGAGCATCACGTACA
GACGTTGTTCCAGGATTATGTAATTTTCTGTTTTCTTCAGAGAGGGGATA
TCCAATGTAGACAGACTGCGCCATCAATTTTGACAATTTTTGGATCTGCG
CGTAAAGGAGAGGCCTCTGTACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig716:17622..19094+

>mRNA_L-elsbetiae_contig716.15989.1 ID=mRNA_L-elsbetiae_contig716.15989.1|Name=mRNA_L-elsbetiae_contig716.15989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig716:17622..19094+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCCGCGACCGGCCGTGGAGGAAGCTCCAACTGGCCCCTTCCCTT
CTCCCTGACCTCCTTGCTCTGGCGCATAGACTCCGTCAGGACCGCCATCG
CCAAGAACTTCAAGCTTGAGATGATGGCCGCGACCGGCCGTGGAGGAAGC
TCCAACTGGCCCCTTCCCTTCTCCCTGACCTCCTTGCTCTGGCGCATAGA
CTCCGTCAGGACCGCCATCGCCAAGAACTTCAAGCTTGAGACAACGTGTT
TACTGGGACGAATGGGATTGAGTCATCGACGTTCAGGGTAGACAACGTGT
TTACTGGGACGAATGGGATTGAGTCATCGACGTTCAGGGTAG
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