mRNA_L-elsbetiae_contig7159.15987.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7159.15987.1
Unique NamemRNA_L-elsbetiae_contig7159.15987.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.430e-67
Identity = 105/128 (82.03%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++  ECFEDNPGILMYGNMCVVYTTG WLLLASF ELPVSTTHSTIGGIVGMA+TYRGPDCVVWYE+A+ FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSPDS KR+I +FPFLV ATI
Sbjct:   87 IADTECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATI 214
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.910e-67
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++IECF DNPGILMYGNMCVVYTTGIWLLLAS+ ELPVSTTHSTIGGIVGMAMTYRG DCVVWYEEA+ FP++ GI+ IVASWVLSPVLS  IAVALFLF+RTFVLRSPDS +R+I +FPFLV ATI
Sbjct:    3 AKIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATI 129
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.060e-66
Identity = 102/128 (79.69%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++ IECFEDNPGILMYGNMCVVYTTGIWLLLASF ELPVSTTHST+GGIVGMAMTYRG DCVVWYEEA+ FP++ G++ IVASW LSP+ S  IAVALFLF+RTFVLRSPD+ KR+I +FPFLV ATI
Sbjct:   86 IADIECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATI 213
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.530e-59
Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            Q+ CF DNPGILMYGNMCVVYT+G WLLLASF ELPVSTTH+T+GGIVGMAMTYRG DCVVWYEEAE FP++ G++ IVASW LSPVLS  IAVAL+ F+RTFVLR+  S K++I IFP LV  TI
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTI 221
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.670e-56
Identity = 90/127 (70.87%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    4 SQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            + IECF DNPGILMYGNMCVVYT GIWLLLASF ELPVSTTHSTIGGIVGM MTYRG DCVVWYEEA+ FP++ G+  IV SW L PVLSG +A  LF  VR  VLRS  +  RS+ +FP LV  TI
Sbjct:   88 ADIECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTI 214
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 6.440e-53
Identity = 76/126 (60.32%), Postives = 100/126 (79.37%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++ECF DNPG+LMYG MCVVYTTG+WLLLAS+L LPVSTTH+TIG ++GM + Y G  CVVW++E++ FP+V G+A I  SWVLSP+ SG +++ +FL VR FVLRSP++  RS  +FP LV+  I
Sbjct:   28 KVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAI 153
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.820e-51
Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:   10 IECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            +ECF DNPGILMYG MCVVYTTG+WLLLAS+LELPVSTTHSTIG I+GMA+ Y G  CVVWY+E++ FP+  G+A I  SWVLSP+ SG  ++ +FL VR FVLRSP++  RS  +FP LV+ TI
Sbjct:   50 VECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTI 174
[Close]
BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.260e-45
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 1 
Query:    7 QIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            Q+ CF DNPG+LMYG MCV+YTT +WLLLAS+LELPVS T STI  IVGM + Y G  CVVW+ E+E FP   G+  I+  W+LSP+++G  +  +FL +RTFVLRSP + +RS  +FP LV+  +
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIV 131
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BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 8.640e-43
Identity = 70/128 (54.69%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++ I+CF D P +LMYG +CV+++ G WLLLAS+LE+PVSTTHS +GG++GMAM   GP CV+W E  ++FP+V G++ IV SW LSP+LS   A+ LFL VRT VLR+ DS  R+  ++P LV  TI
Sbjct:   76 IADIDCFVDEPAVLMYGCLCVIFSVGGWLLLASYLEMPVSTTHSCVGGMIGMAMVAHGPACVIWAEPTDQFPYVKGVSAIVISWFLSPLLSAISAMGLFLLVRTTVLRAKDSYDRAFKVYPLLVGVTI 203
[Close]
BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Match: A0A6V1T0D7_HETAK (Phosphate transporter n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T0D7_HETAK)

HSP 1 Score: 156 bits (394), Expect = 9.300e-43
Identity = 66/128 (51.56%), Postives = 98/128 (76.56%), Query Frame = 1 
Query:    1 LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIVGMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFLFVRTFVLRSPDSAKRSIAIFPFLVIATI 384
            ++ I+CF D+  +LMYG MCV++ TG+WLL+A+F ++PVSTTHS +GGI+GM +  +G  CVVW+++ ++FPFV G++ IV SW+LSP+ SG  A  L+LFVRTF+LRS +S  R+   +PFL+ + I
Sbjct:   85 IADIDCFIDDGPVLMYGMMCVIFCTGLWLLIATFFQMPVSTTHSVVGGIIGMTIAAKGGSCVVWHKDTDQFPFVKGVSAIVVSWILSPLFSGVGAAILYLFVRTFILRSENSYTRAFIFYPFLLASAI 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7159.15987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K9_ECTSI1.430e-6782.03Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE1.910e-6782.68Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNE7_9PHAE3.060e-6679.69Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI7.530e-5974.60Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI7.670e-5670.87Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ4_ECTSI6.440e-5360.32High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI3.820e-5165.60Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI1.260e-4555.56High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A7S0QA31_9EUKA8.640e-4354.69Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]
A0A6V1T0D7_HETAK9.300e-4351.56Phosphate transporter n=2 Tax=Heterosigma akashiwo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7159contigL-elsbetiae_contig7159:7837..8693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.2
Seed ortholog evalue1.3e-55
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816795.4067848-CDS-L-elsbetiae_contig7159:7836..80611622816795.4067848-CDS-L-elsbetiae_contig7159:7836..8061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7159 7837..8061 +
1691683819.2849784-CDS-L-elsbetiae_contig7159:7836..80611691683819.2849784-CDS-L-elsbetiae_contig7159:7836..8061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7159 7837..8061 +
1622816795.4223309-CDS-L-elsbetiae_contig7159:8534..86931622816795.4223309-CDS-L-elsbetiae_contig7159:8534..8693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7159 8535..8693 +
1691683819.2960894-CDS-L-elsbetiae_contig7159:8534..86931691683819.2960894-CDS-L-elsbetiae_contig7159:8534..8693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7159 8535..8693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7159.15987.1prot_L-elsbetiae_contig7159.15987.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7159 7837..8693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7159.15987.1

>prot_L-elsbetiae_contig7159.15987.1 ID=prot_L-elsbetiae_contig7159.15987.1|Name=mRNA_L-elsbetiae_contig7159.15987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
LSQIECFEDNPGILMYGNMCVVYTTGIWLLLASFLELPVSTTHSTIGGIV
GMAMTYRGPDCVVWYEEAEKFPFVDGIAGIVASWVLSPVLSGFIAVALFL
FVRTFVLRSPDSAKRSIAIFPFLVIATI
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mRNA from alignment at L-elsbetiae_contig7159:7837..8693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7159.15987.1 ID=mRNA_L-elsbetiae_contig7159.15987.1|Name=mRNA_L-elsbetiae_contig7159.15987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=857bp|location=Sequence derived from alignment at L-elsbetiae_contig7159:7837..8693+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACGG
CAACATGTGTGTCGTGTACACCACCGGGATCTGGCTCCTGCTGGCGTCCT
TCCTCGAGCTGCCCGTGTCCACCACCCACTCCACTATCGGAGGCATCGTC
GGAATGGCGATGACCTACCGCGGGCCCGACTGCGTCGTGTGGTACGAGGA
GGCCGAAAAATTCCCCTTTGTGGATGTGAGTAGCTTTTACAAAATGTGTA
CCTGTGGCCAAGATATTTTGCGTTTTTTCAATCACACATACATATTATAT
CAGAGCCTTGAGTCAACAAAAACGTACTCCTACTACATGAGTATGGATAT
TGCGTGCATCGAGTTGTGAAGGGTGGTTAGGTTACATCCAAACGGAACAC
ATCTAGACGGCAGAAGGCATCACACACGCGCGAAACAACCTTTGGGGAGT
TTCTACTTCGGTTCTCGTAAAGTCGTCGTTGTTGAATACCGCACAATGTT
GTAAACAATAACCTTTCCTACGTTGTTTCTCACACCGTGGGTAACCATCC
TCGAACACGAGTCCATTGTACGGTTTATTTCACGACCCCCCTCTTGCTCA
TGATTACGTGGCATCCCCCCTGCCTCGTTGCTCCCAAACAAACAAACTTT
CCTACGAACCACCGAACGTCACCGATCGACCGATTGGGCAAATCACAGGG
CATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGTCCTGTCAGGAT
TCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCGTGCTGCGGTCA
CCCGACTCCGCCAAGAGATCGATCGCCATCTTCCCCTTCCTGGTGATCGC
TACCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7159:7837..8693+

>mRNA_L-elsbetiae_contig7159.15987.1 ID=mRNA_L-elsbetiae_contig7159.15987.1|Name=mRNA_L-elsbetiae_contig7159.15987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig7159:7837..8693+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCGCAGATCGAGTGCTTCGAGGACAACCCGGGCATCCTGATGTACGG
CAACATGTGTGTCGTGTACACCACCGGGATCTGGCTCCTGCTGGCGTCCT
TCCTCGAGCTGCCCGTGTCCACCACCCACTCCACTATCGGAGGCATCGTC
GGAATGGCGATGACCTACCGCGGGCCCGACTGCGTCGTGTGGTACGAGGA
GGCCGAAAAATTCCCCTTTGTGGATTTGTCGCAGATCGAGTGCTTCGAGG
ACAACCCGGGCATCCTGATGTACGGCAACATGTGTGTCGTGTACACCACC
GGGATCTGGCTCCTGCTGGCGTCCTTCCTCGAGCTGCCCGTGTCCACCAC
CCACTCCACTATCGGAGGCATCGTCGGAATGGCGATGACCTACCGCGGGC
CCGACTGCGTCGTGTGGTACGAGGAGGCCGAAAAATTCCCCTTTGTGGAT
GGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGTCCTGTCAGG
ATTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCGTGCTGCGGT
CACCCGACTCCGCCAAGAGATCGATCGCCATCTTCCCCTTCCTGGTGATC
GCTACCATCGGCATTGCCGGCATCGTGGCCTCTTGGGTGCTCTCCCCCGT
CCTGTCAGGATTCATCGCCGTCGCCCTGTTCCTGTTCGTGAGGACCTTCG
TGCTGCGGTCACCCGACTCCGCCAAGAGATCGATCGCCATCTTCCCCTTC
CTGGTGATCGCTACCATC
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