mRNA_L-elsbetiae_contig7150.15972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7150.15972.1
Unique NamemRNA_L-elsbetiae_contig7150.15972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: D7FXU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU1_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.270e-32
Identity = 85/122 (69.67%), Postives = 93/122 (76.23%), Query Frame = 2 
Query:    2 TLEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFELAPEDVDS-VNASRLAAAGWSGSTGPRR-PSYDARTSEHSGTPATTT-------TTTRERTYSSSNPVLV 340
            TLEM AQPGSYLRKTVDCFTRPGAVQLVNED EQLMADYLR+RELEDSG+FELA ED D  +NA+RLAAA  S   G +R  SYD R SEHS T A          T+ R+RT+SSSNPVLV
Sbjct:  944 TLEMTAQPGSYLRKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELAAEDADGGINAARLAAA--SPRAGAQRCGSYDGR-SEHSSTLAXXXXXXXXXXTSARDRTFSSSNPVLV 1062
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A6H5LB88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB88_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.750e-32
Identity = 84/122 (68.85%), Postives = 92/122 (75.41%), Query Frame = 2 
Query:    2 TLEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFELAPEDVDS-VNASRLAAAGWSGSTGPRR-PSYDARTSEHSGTPATTT-------TTTRERTYSSSNPVLV 340
            TLEM AQPGSYLRKTVDCFTRPGAVQLVNED EQLMADYLR+RELEDSG+FELAPED D  +NA+RLA A  S   G +R  SYD R SEHS T A          T+  +RT+SSSNPVLV
Sbjct:  868 TLEMTAQPGSYLRKTVDCFTRPGAVQLVNEDKEQLMADYLRVRELEDSGMFELAPEDADGGINAARLADA--SPRAGAQRCGSYDGR-SEHSSTLAXXXXXXXXXXTSALDRTFSSSNPVLV 986
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A7S1XUG5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUG5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:    8 EMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFEL 160
            E+  QPGS + KT+DCFTRPGAVQL + D EQ+  DY RIRELE  GLF++
Sbjct:   92 ELVVQPGSQMVKTIDCFTRPGAVQLTHPDAEQVARDYRRIRELEREGLFKM 142
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A835Z961_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z961_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.350e-10
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:    5 LEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDS--GLFEL 160
            +EM AQPGSY+  TVDCFTRPGAVQLV+ED E L  DY RIR LE    GLFEL
Sbjct:  933 MEMTAQPGSYVYPTVDCFTRPGAVQLVHEDGEALAEDYERIRALEQEQGGLFEL 986
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A7S3HD13_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD13_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.420e-9
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:    5 LEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFEL 160
            +EM  QPGS L +TVDCFTRPG+VQLVN +  QL  DY  IR LE  G+FEL
Sbjct:  922 MEMLTQPGSTLHRTVDCFTRPGSVQLVNANAHQLHTDYQIIRSLEKGGMFEL 973
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A421H2S4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H2S4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.930e-8
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   26 GSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFELAPEDVDSVNASRLA 202
            G  L+ TVD FT PG+V +VNED EQL  DY RIRELE  GL+ L PED   ++ S+++
Sbjct:  521 GDELKTTVDMFTTPGSVIMVNEDEEQLNRDYARIRELEHKGLYALEPEDETDISQSQVS 579
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A7S0XE07_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE07_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.130e-8
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:    5 LEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFELA 163
            +EM  QPG+ +  T+DCFTRPG+VQLVNED  QL  DY  IR LE  GLF L+
Sbjct:  902 IEMLTQPGATIYPTIDCFTRPGSVQLVNEDLNQLEEDYNAIRLLEKDGLFLLS 954
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A7R9YF27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF27_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.890e-8
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:    8 EMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFEL 160
            EM  QPG+ + KT+DCF+RPG+VQL +ED   +  DY RIRELE  GLF L
Sbjct:  274 EMVVQPGASIMKTIDCFSRPGSVQLTHEDPSVVARDYERIRELEQEGLFIL 324
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A482T3N5_9ARCH (LAL_C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3N5_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-7
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 2 
Query:    5 LEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADYLRIRELEDSGLFEL 160
            LEM  QPG+ +R T+DCFTRPG+VQ+VN+  + L  DY  IR+LE  GL  L
Sbjct:  185 LEMLTQPGASIRPTIDCFTRPGSVQMVNKSADALQRDYDAIRKLEHDGLLVL 236
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BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Match: A0A7R9YE89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE89_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.740e-6
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:    2 TLEMNAQPGSYLRKTVDCFTRPGAVQLVNEDTEQLMADY--LRIRELEDSGLFELA 163
            +LEM  +PG ++ KT+DCFTRPGA QL++ D E +  DY  LR  EL   GLF+L+
Sbjct:  501 SLEMMVKPGDFIAKTIDCFTRPGAAQLLHTDAEVVAKDYEMLRALELPGGGLFDLS 556
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7150.15972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FXU1_ECTSI1.270e-3269.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB88_9PHAE5.750e-3268.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XUG5_9STRA1.500e-1062.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z961_9STRA2.350e-1070.37ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3HD13_9STRA4.420e-963.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A421H2S4_9STRA1.930e-854.24Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A7S0XE07_9STRA6.130e-860.38Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7R9YF27_9STRA7.890e-858.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A482T3N5_9ARCH1.250e-755.77LAL_C2 domain-containing protein n=1 Tax=archaeon ... [more]
A0A7R9YE89_9STRA1.740e-651.79Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7150contigL-elsbetiae_contig7150:7701..9657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size887
Cds size624
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7150.15972.1prot_L-elsbetiae_contig7150.15972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7150 7963..9657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.3061583-UTR-L-elsbetiae_contig7150:7700..79621622816794.3061583-UTR-L-elsbetiae_contig7150:7700..7962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7150 7701..7962 -
1691683818.4906127-UTR-L-elsbetiae_contig7150:7700..79621691683818.4906127-UTR-L-elsbetiae_contig7150:7700..7962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7150 7701..7962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.3192792-CDS-L-elsbetiae_contig7150:7962..84631622816794.3192792-CDS-L-elsbetiae_contig7150:7962..8463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 7963..8463 -
1691683818.5043564-CDS-L-elsbetiae_contig7150:7962..84631691683818.5043564-CDS-L-elsbetiae_contig7150:7962..8463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 7963..8463 -
1622816794.3307304-CDS-L-elsbetiae_contig7150:9534..96571622816794.3307304-CDS-L-elsbetiae_contig7150:9534..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 9535..9657 -
1691683818.514633-CDS-L-elsbetiae_contig7150:9534..96571691683818.514633-CDS-L-elsbetiae_contig7150:9534..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7150 9535..9657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7150.15972.1

>prot_L-elsbetiae_contig7150.15972.1 ID=prot_L-elsbetiae_contig7150.15972.1|Name=mRNA_L-elsbetiae_contig7150.15972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
DSRNERTTGVVPAEDGGLLHEAGSGAARQRGHGAAYGRLPQDPRAGRLRA
VRAGPRRCRQRERFPAGRGGLVGIDGAPPPLVRCPDLGALRDPGHHHHHH
SRANLLEQQPGARLSLDAGVGCVEGVSFRWGDDSFYFLGLVPGLSFVTRA
AGNLYRSRCFLTSKKVWRGDTVLMHVMTRAVAVVVASFICCFGRDYLVTH
GELQYPA*
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mRNA from alignment at L-elsbetiae_contig7150:7701..9657-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7150.15972.1 ID=mRNA_L-elsbetiae_contig7150.15972.1|Name=mRNA_L-elsbetiae_contig7150.15972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1957bp|location=Sequence derived from alignment at L-elsbetiae_contig7150:7701..9657- (Laminarionema elsbetiae ELsaHSoW15)
GACTCTCGAAATGAACGCACAACCGGGGTCGTACCTGCGGAAGACGGTGG
ACTGCTTCACGAGGCCGGGAGCGGTGCAGCTCGTCAACGAGGACACGGAG
CAGCTTATGGCCGACTACCTCAGGCACGTACATACATACGAGGAGAGAGA
GGCTGGCTGTCTTCGTTCGCTTTTTTGTGTTTGTTTTTTTCTCACGGATA
GTGTAGAGAGGTTACCCTTGCAAGGGATACAAACCCCAAACCTCCTGCGT
AAGGGTGACCTCCACAATGGCCAAGATGTACACATGCATGCATGCATGGA
CACATACCCACCGCATTTCCCAATGCCCGGGCAAAACAACCCGAGCAAGT
TTAAGAAAAACCGCATCGTTCTTGGTCGCCGCGTAGTAAACGCAGGTGGT
GTGTTACTTTTTGCTTGTCCGGTTGTGTAAGATTTCAGCCCCCCCCCCCC
CGCGCGATGTATTTTGGATTGGGAGGTAGGTTTACCGCTTGTGAGGGGGC
GGAAGAGAAGTAAGGTCATCTTGTGATTTTCAAAGGATGACTCTGCGCTT
TGTAGGGGGGTTGTTGTTGAATGATGATGATGGTGATTGCCTGCTGGGTT
AAGTCACAGTAGTTGTTATGGTGCGCTTATACTGCTGTGAACAAAGCGGT
CTGCTGCGGACTTTTGCACCACCGCGATGGAGGACCGGTCAAGACGGCGG
TACCTTGACTCGGGCGAAGATGCGCGTTCCTCTGGGCCTTGCCTTGGTGG
TCTGGCGACATGAAATAACAAGTCTGGCCTGAGAGACCTGCGCAGGCAAA
GCAGGGGCTCGTGTCGAAGTGTGGTGTGCTTCCCGACACGTGCGCGCTCG
CGACCGCGGGTTCGCGGTGGATACCTTGTCGTGATCCCAGACGGCACTGC
CGGTGGAACTCGACCATGGTAACACGCCGACGAGAGAGAGAGCCCTGATC
CGAACCGCGCCTACGCACCACATGCCTCTTTAGCACACAACCCCCACCAA
TATGTTGCCGCCGGCCGCAGGCAGCTCTCGGCATTTCTTAACGTCGCCGT
TGGTGCCCCCTTGCACGACCGCCACAGCACTCTATCCCACGGGACCCCCC
TAACCTATGGAGCAATCACGGTGCCACTCACCCCTTCTAAAACTCGGGGC
CCTATTTTGCACGATTCCTCGCTCGCCCTGACCTACCCGCGCAGGATCCG
AGAGCTGGAAGACTCCGGGCTGTTCGAGCTGGCCCCCGAAGATGTCGACA
GCGTGAACGCTTCCCGGCTGGCCGCGGCGGGCTGGTCGGGATCGACGGGG
CCCCGCCGCCCCTCGTACGATGCCCGGACCTCGGAGCACTCCGGGACCCC
GGCCACCACCACCACCACCACTCGCGAGCGAACCTACTCGAGCAGCAACC
CGGTGCTCGTCTGAGTTTGGATGCGGGAGTGGGGTGTGTTGAGGGAGTTT
CGTTCCGATGGGGGGACGATAGCTTTTATTTTCTAGGTTTGGTGCCAGGC
TTGAGTTTTGTCACCAGAGCGGCGGGCAACCTGTACCGGTCTCGTTGTTT
TCTTACCAGCAAGAAGGTGTGGCGCGGTGACACAGTTTTGATGCATGTGA
TGACGCGTGCCGTTGCCGTTGTTGTCGCCAGTTTCATATGTTGTTTTGGC
CGAGACTATTTAGTGACTCACGGTGAGCTGCAATATCCTGCTTGAGCTTT
TGAACCAGACCAACGATTTTGTGCGTGTGTGTGTATACATGTATACAAAG
TCCATGTGGTACCATGCTCCGCCAGGAGTGAGTCCGGTGCTCTCGTCTGC
ACTTGTTAGCGTGGTGGGGGTCGAAGGCCAATCGATTCGTCGACTGCCAT
GACGCGTTTATTTGGTGTGGTCGGGAGGGGTCACGACGGTAAGGGCGGGG
CTCGTTTTTGTCTTCGGGTGACAAAAAAAGGTACCGAACAATTTTGGCCC
GGCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7150:7701..9657-

>mRNA_L-elsbetiae_contig7150.15972.1 ID=mRNA_L-elsbetiae_contig7150.15972.1|Name=mRNA_L-elsbetiae_contig7150.15972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig7150:7701..9657- (Laminarionema elsbetiae ELsaHSoW15)
GACTCTCGAAATGAACGCACAACCGGGGTCGTACCTGCGGAAGACGGTGG
ACTGCTTCACGAGGCCGGGAGCGGTGCAGCTCGTCAACGAGGACACGGAG
CAGCTTATGGCCGACTACCTCAGGACTCTCGAAATGAACGCACAACCGGG
GTCGTACCTGCGGAAGACGGTGGACTGCTTCACGAGGCCGGGAGCGGTGC
AGCTCGTCAACGAGGACACGGAGCAGCTTATGGCCGACTACCTCAGGATC
CGAGAGCTGGAAGACTCCGGGCTGTTCGAGCTGGCCCCCGAAGATGTCGA
CAGCGTGAACGCTTCCCGGCTGGCCGCGGCGGGCTGGTCGGGATCGACGG
GGCCCCGCCGCCCCTCGTACGATGCCCGGACCTCGGAGCACTCCGGGACC
CCGGCCACCACCACCACCACCACTCGCGAGCGAACCTACTCGAGCAGCAA
CCCGGTGCTCGTCTGAGTTTGGATGCGGGAGTGGGGTGTGTTGAGGGAGT
TTCGTTCCGATGGGGGGACGATAGCTTTTATTTTCTAGGTTTGGTGCCAG
GCTTGAGTTTTGTCACCAGAGCGGCGGGCAACCTGTACCGGTCTCGTTGT
TTTCTTACCAGCAAGAAGGTGTGGCGCGGTGACACAGTTTTGATGCATGT
GATGACGCGTGCCGTTGCCGTTGTTGTCGCCAGTTTCATATGTTGTTTTG
GCCGAGACTATTTAGTGACTCACGGTGAGCTGCAATATCCTGCTTGAGAT
CCGAGAGCTGGAAGACTCCGGGCTGTTCGAGCTGGCCCCCGAAGATGTCG
ACAGCGTGAACGCTTCCCGGCTGGCCGCGGCGGGCTGGTCGGGATCGACG
GGGCCCCGCCGCCCCTCGTACGATGCCCGGACCTCGGAGCACTCCGGGAC
CCCGGCCACCACCACCACCACCACTCGCGAGCGAACCTACTCGAGCAGCA
ACCCGGTGCTCGTCTGAGTTTGGATGCGGGAGTGGGGTGTGTTGAGGGAG
TTTCGTTCCGATGGGGGGACGATAGCTTTTATTTTCTAGGTTTGGTGCCA
GGCTTGAGTTTTGTCACCAGAGCGGCGGGCAACCTGTACCGGTCTCGTTG
TTTTCTTACCAGCAAGAAGGTGTGGCGCGGTGACACAGTTTTGATGCATG
TGATGACGCGTGCCGTTGCCGTTGTTGTCGCCAGTTTCATATGTTGTTTT
GGCCGAGACTATTTAGTGACTCACGGTGAGCTGCAATATCCTGCTTGA
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