mRNA_L-elsbetiae_contig7146.15964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7146.15964.1
Unique NamemRNA_L-elsbetiae_contig7146.15964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7146.15964.1 vs. uniprot
Match: D8LLZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLZ1_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.770e-65
Identity = 150/309 (48.54%), Postives = 194/309 (62.78%), Query Frame = 1 
Query:   46 TTKKPVKRRKLTAGQIVVARRR-SIEDSG--GQKWQAAKVVEADGEGHYSVLFASDPDVRSVHFTDVKPLENNTSESGDGAAGXXXXXXXXXXXXXXXXQSIPVFLKVTAPSFDLTTSASAARRTSPRLILATGEGRDADSKNSPWLHYQ-------DKDQWSNGGEEQGRHNNSSDGSNKGVGFMTRSSPRAGSRNPAWKDGEFWLSLEGLEDPALFLALEDAKS--ERQGGGR------RGNVSADAILAEACIPLPLEEMRRKGNSSGRGGRWGSRSNETLEVELKNGAGVVSLQWSTHKDTSSMR 918
            T  +  K R L AG  VVARR  S  D G  G+KW+AAKVV+   E +YSVLF+ DP+   VHFT+VKPLE++ +++                       +  +FL+VT PSFDL  +ASAAR TSPRLILATGE   A+  ++ WLH++       D D WSNG +   R+ N +DG+ K VGF++R + R GSRNP+W+DGEFWLSL+GL+DPALF+ALED K   E++GGGR       G     A LAEACIP+PLE++R  G           R N T+EVEL +GAGVV+LQWS H+DTS M+
Sbjct: 1405 TDPQSTKSRWLDAGDPVVARRAASSNDDGASGRKWEAAKVVKVIDEEYYSVLFSGDPEPVRVHFTEVKPLEDHAADNS-------------------RLVTTGLFLRVTEPSFDLKIAASAARHTSPRLILATGER--ANEHDALWLHHKNIDNDENDDDAWSNGSKRVQRNRNHNDGT-KAVGFLSRGAARPGSRNPSWRDGEFWLSLKGLDDPALFVALEDGKKVQEQRGGGRGGWKRGEGGQGGVAFLAEACIPVPLEDLR--GGXXXXXXXXXXR-NGTVEVELLDGAGVVTLQWSLHEDTSKMQ 1688
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7146.15964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLZ1_ECTSI1.770e-6548.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7146contigL-elsbetiae_contig7146:252..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1463
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7146.15964.1prot_L-elsbetiae_contig7146.15964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7146 1336..1695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.4509492-UTR-L-elsbetiae_contig7146:251..4361622816793.4509492-UTR-L-elsbetiae_contig7146:251..436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 252..436 +
1691683817.760295-UTR-L-elsbetiae_contig7146:251..4361691683817.760295-UTR-L-elsbetiae_contig7146:251..436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 252..436 +
1622816793.462947-UTR-L-elsbetiae_contig7146:950..13351622816793.462947-UTR-L-elsbetiae_contig7146:950..1335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 951..1335 +
1691683817.7705905-UTR-L-elsbetiae_contig7146:950..13351691683817.7705905-UTR-L-elsbetiae_contig7146:950..1335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 951..1335 +
1622816793.4878223-UTR-L-elsbetiae_contig7146:1695..22281622816793.4878223-UTR-L-elsbetiae_contig7146:1695..2228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 1696..2228 +
1691683817.8003817-UTR-L-elsbetiae_contig7146:1695..22281691683817.8003817-UTR-L-elsbetiae_contig7146:1695..2228Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7146 1696..2228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.4738986-CDS-L-elsbetiae_contig7146:1335..16951622816793.4738986-CDS-L-elsbetiae_contig7146:1335..1695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7146 1336..1695 +
1691683817.7806392-CDS-L-elsbetiae_contig7146:1335..16951691683817.7806392-CDS-L-elsbetiae_contig7146:1335..1695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7146 1336..1695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7146.15964.1

>prot_L-elsbetiae_contig7146.15964.1 ID=prot_L-elsbetiae_contig7146.15964.1|Name=mRNA_L-elsbetiae_contig7146.15964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MTRSSPRAGSRNPAWKDGEFWLSLEGLEDPALFLALEDAKSERQGGGRRG
NVSADAILAEACIPLPLEEMRRKGNSSGRGGRWGSRSNETLEVELKNGAG
VVSLQWSTHKDTSSMRTGG*
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mRNA from alignment at L-elsbetiae_contig7146:252..2228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7146.15964.1 ID=mRNA_L-elsbetiae_contig7146.15964.1|Name=mRNA_L-elsbetiae_contig7146.15964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1977bp|location=Sequence derived from alignment at L-elsbetiae_contig7146:252..2228+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCATTTCACGAGTGGTTCACCCAGGCACGGGCACCTTATCGGCACCAC
AAAGAAGCCCGTCAAAAGGCGCAAGCTAACCGCCGGGCAGATAGTCGTTG
CTCGCAGGAGGTCAATCGAGGACTCGGGCGGGCAGAAGTGGCAGGCCGCC
AAGGTCGTCGAGGCCGACGGCGAAGGGCACTACAGGTATGTACATATCGG
CGTTTTGGAGCTAATCGCCAACAGCACCGCGTTGGACGGAGCTTTCTATT
CGTCTATGCCTGTGCCCTGTGTTCTAACTGCTCGCCCTGTCGCCCACCCC
TCGTTATCACCCTCCCTACAAGTGTTGTAGATGAAAGACCCTGGTCTCCG
ACGCGGTCTTAGTATTGCCGTATCTATGCAGATATGTGTACTTATTTCTG
TCTTCGTGACCCCCTACCACCCCCTGCCCTGATAGCAACGAAAGAGGGTC
CTTCCCGGCCTTCTCTATTTTCTTTTGTCAACGGCAACCGATGTCAGAGA
GTCGATCCGACGTTCGGACACGCTGTTTACGCGGCGAAAATGCGGCAACG
GCTTACCTACTACCGTGCTCATGCATTGCGCCGTAAAAGTGGCACATTCG
CCGCCGCCTGCGCTCTTCACGATCGAAGTCGCCCTGTACGAAGACGGCCA
GTCCAGAAATACACCCCTCTGCACGCGCGCATCCACCCCCAACCCTCAGT
GTACTTTTCGCAAGTGACCCCGACGTCAGGAGCGTCCACTTCACCGACGT
GAAACCCCTCGAGAACAACACATCCGAAAGTGGCGATGGAGCAGCAGGTG
CCCAAAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACCAG
AGCATACCAGTCTTCCTCAAGGTAACGGCGCCGTCATTCGACCTAACGAC
CTCAGCCTCAGCCGCGCGGCGTACCTCCCCGCGCCTTATCCTAGCCACCG
GGGAGGGAAGAGACGCCGATTCCAAGAACAGCCCCTGGCTCCACTACCAG
GACAAAGACCAGTGGTCGAACGGTGGCGAAGAACAAGGACGCCACAACAA
CAGCAGCGACGGCAGCAACAAAGGGGTCGGGTTCATGACCCGCTCATCCC
CCCGCGCGGGCTCTCGGAACCCAGCCTGGAAAGACGGGGAGTTCTGGCTG
TCGCTGGAGGGGCTCGAAGACCCCGCTCTGTTCTTGGCGCTGGAAGACGC
GAAGAGCGAAAGGCAGGGAGGCGGGAGAAGAGGGAATGTTTCGGCGGACG
CCATCCTCGCGGAGGCGTGCATCCCCTTGCCGCTAGAAGAGATGCGCCGC
AAGGGCAACAGCAGCGGCCGCGGCGGGCGATGGGGAAGCCGCAGCAACGA
GACGCTCGAGGTGGAGCTCAAAAACGGGGCGGGTGTCGTCTCCCTGCAGT
GGAGTACGCACAAGGATACCTCGTCAATGAGAACCGGAGGTTGACTTGAT
TTTGGCGACAAAAAAGGTTGTGATGTTAGATACTCACATAAGGGGTAGAG
AGACGATATTGATCGTCGGTAGAAACTAGTCTAGATATTATCTGTAAAAC
AAATCACTACAATGGCAAGAAATTCGAAAGCAGCGAGCTTCAAGTCAACT
CACTCTGTGGCTTCGGTTCAGCAACCAACTTGTGCTCCGAGGATCAACGA
AATTTTGGCTGTATTTATGTAGATACATGTGTTTGGATTTAGATTCTGGC
AGCGCAGAAAGAGGATATATATCTAGTCTAGACTATCTACATAGAATCGC
TCTTTATTCTTCGGTAGGGCAAGGAAGTATGGTCGCAAGTGGGCAACATG
GGGAACTGAGCAGTATATAGTTTCGAGCGTGAGAGAGGGGGAGGCGGGCA
ATAACAAGGGTAGCGCATGCCAACACAGCTGTTGCCGAATACGGCCTTAC
ATAGCCTTTTAGTTGCACTCGACCATCCGTGCGGTACGTATTGGGTCTCT
TCCTGGCTTTTTCCTTTGGTGCTGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7146:252..2228+

>mRNA_L-elsbetiae_contig7146.15964.1 ID=mRNA_L-elsbetiae_contig7146.15964.1|Name=mRNA_L-elsbetiae_contig7146.15964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig7146:252..2228+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCCGCTCATCCCCCCGCGCGGGCTCTCGGAACCCAGCCTGGAAAGA
CGGGGAGTTCTGGCTGTCGCTGGAGGGGCTCGAAGACCCCGCTCTGTTCT
TGGCGCTGGAAGACGCGAAGAGCGAAAGGCAGGGAGGCGGGAGAAGAGGG
AATGTTTCGGCGGACGCCATCCTCGCGGAGGCGTGCATCCCCTTGCCGCT
AGAAGAGATGCGCCGCAAGGGCAACAGCAGCGGCCGCGGCGGGCGATGGG
GAAGCCGCAGCAACGAGACGCTCGAGGTGGAGCTCAAAAACGGGGCGGGT
GTCGTCTCCCTGCAGTGGAGTACGCACAAGGATACCTCGTCAATGAGAAC
CGGAGGTTGAATGACCCGCTCATCCCCCCGCGCGGGCTCTCGGAACCCAG
CCTGGAAAGACGGGGAGTTCTGGCTGTCGCTGGAGGGGCTCGAAGACCCC
GCTCTGTTCTTGGCGCTGGAAGACGCGAAGAGCGAAAGGCAGGGAGGCGG
GAGAAGAGGGAATGTTTCGGCGGACGCCATCCTCGCGGAGGCGTGCATCC
CCTTGCCGCTAGAAGAGATGCGCCGCAAGGGCAACAGCAGCGGCCGCGGC
GGGCGATGGGGAAGCCGCAGCAACGAGACGCTCGAGGTGGAGCTCAAAAA
CGGGGCGGGTGTCGTCTCCCTGCAGTGGAGTACGCACAAGGATACCTCGT
CAATGAGAACCGGAGGTTGA
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