mRNA_L-elsbetiae_contig7139.15955.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7139.15955.1
Unique NamemRNA_L-elsbetiae_contig7139.15955.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7139.15955.1 vs. uniprot
Match: A0A6H5JF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF13_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.420e-5
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 VIVLNAVDAIRALEVRLHTDD-GRFSPPSRP--------RVSATGE-LSPVPLRAKFTLRPP 156
            VIVLNAVDAIR +EVRLHT+  G+ SPPS          RV   G  LSP+P    FT+RPP
Sbjct:  195 VIVLNAVDAIRVVEVRLHTEGAGQASPPSPSPGGGKCPARVPVGGRRLSPLPFDTTFTIRPP 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7139.15955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JF13_9PHAE5.420e-554.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7139contigL-elsbetiae_contig7139:6632..7921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.5701022-CDS-L-elsbetiae_contig7139:6631..69461622816792.5701022-CDS-L-elsbetiae_contig7139:6631..6946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7139 6632..6946 -
1691683817.089876-CDS-L-elsbetiae_contig7139:6631..69461691683817.089876-CDS-L-elsbetiae_contig7139:6631..6946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7139 6632..6946 -
1622816792.582753-CDS-L-elsbetiae_contig7139:7879..79211622816792.582753-CDS-L-elsbetiae_contig7139:7879..7921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7139 7880..7921 -
1691683817.1014693-CDS-L-elsbetiae_contig7139:7879..79211691683817.1014693-CDS-L-elsbetiae_contig7139:7879..7921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7139 7880..7921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7139.15955.1prot_L-elsbetiae_contig7139.15955.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7139 6632..7921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7139.15955.1

>prot_L-elsbetiae_contig7139.15955.1 ID=prot_L-elsbetiae_contig7139.15955.1|Name=mRNA_L-elsbetiae_contig7139.15955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
VIVLNAVDAIRALEVRLHTDDGRFSPPSRPRVSATGELSPVPLRAKFTLR
PPSAPAQPGSSSGGGGGFGGGGDKGGSGSSSSCCEGGGCGGSGAWDSAGD
RGGREARDDGGGSIGDGSN
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mRNA from alignment at L-elsbetiae_contig7139:6632..7921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7139.15955.1 ID=mRNA_L-elsbetiae_contig7139.15955.1|Name=mRNA_L-elsbetiae_contig7139.15955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig7139:6632..7921- (Laminarionema elsbetiae ELsaHSoW15)
GTGATCGTGCTCAATGCCGTGGACGCCATTCGTGCTCTGGAGGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCATGGCGTCGGAAATTA
AGTTTTATCTAGGAAAATAACACTAACCCTAACCCTAGCCCCAGCCACCG
ACCCCCCTTTCGCGGTTTCCATACTTTATCTCATATGTTGGGTTTCCATA
CTTTATCTCATATGTTAGGTTTCCATACTTTATCTCATATGTTAAGTTCC
CATGCTTTGTCTCATATGTTAGGTTTCCATGCTTTATCTCCTATGTTAGG
TTTCCATGCTTTATCTCATATGTTAGGTTCCCATGCTTTATCTCATATGT
TAGGTTCCCATGCTTTATCTCATATGTTAGGTTTCCATGCTTTATCTCAT
ATGTTCGGTTTCCGTCCTTTATCCCATATGTTAGGTTTCCATACTTTATC
TCATATGTTAGCTGAAGATGAAAATATGAAAACCCTGCGTAGACTTCTGA
CGGCGTCCTTGCTTTGGGGTAAGCACCAACGTAGCTCGAGTGCTTCTAAG
TTGCCTGATGGTTTCGTGGGCATTTTGCTCTGTGGAGAATGCGGGCGTCA
GTTTGGTTTGTGTGTTGTGGTGCATGTGTGCGATGATGCGGTACGAAACC
TGGAGCGGTGTGTGTGTGTGTGCGTTGTGTCCCTCGCGTAGTCTGGCGTT
TTTAACACAGTCGTAGGGTCAGCAGTTCTAGAACACATGCATGTGTCCGG
AGAGTGTCTACCTTTCAGCTGTTGGCCCCCGAGCTCCAAGGATGGCTAAA
ATAAAAGCTCTACATATTTTTCAACGTTAGACAAGAGGGGGTTATGTTTC
CCGACCACGATTGCACCAAGCTGTGGGTGACGGGCCTGATTTCCGCCGCC
CGCGTTTTGACGCCCAGGACCTGCGACTCCTCTCTTTCCTCCCTCCTCTC
TTTCTTCCCTCGTTTCATGTCGAAGGTGAGGCTGCACACAGACGACGGCC
GATTTTCACCGCCTTCGCGGCCTCGTGTCTCGGCCACGGGAGAGCTTAGC
CCCGTTCCGCTCCGCGCGAAGTTCACGCTCCGGCCTCCCAGCGCCCCCGC
TCAACCCGGAAGCAGTTCCGGCGGCGGCGGTGGATTTGGCGGAGGCGGGG
ACAAAGGAGGCAGCGGCAGCAGCAGTAGTTGCTGCGAAGGCGGCGGCTGC
GGCGGCAGTGGCGCATGGGATTCTGCTGGTGACCGGGGAGGCAGGGAGGC
TCGGGATGACGGTGGTGGTAGTATCGGGGACGGGTCGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7139:6632..7921-

>mRNA_L-elsbetiae_contig7139.15955.1 ID=mRNA_L-elsbetiae_contig7139.15955.1|Name=mRNA_L-elsbetiae_contig7139.15955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig7139:6632..7921- (Laminarionema elsbetiae ELsaHSoW15)
GTGATCGTGCTCAATGCCGTGGACGCCATTCGTGCTCTGGAGGTGATCGT
GCTCAATGCCGTGGACGCCATTCGTGCTCTGGAGGTGAGGCTGCACACAG
ACGACGGCCGATTTTCACCGCCTTCGCGGCCTCGTGTCTCGGCCACGGGA
GAGCTTAGCCCCGTTCCGCTCCGCGCGAAGTTCACGCTCCGGCCTCCCAG
CGCCCCCGCTCAACCCGGAAGCAGTTCCGGCGGCGGCGGTGGATTTGGCG
GAGGCGGGGACAAAGGAGGCAGCGGCAGCAGCAGTAGTTGCTGCGAAGGC
GGCGGCTGCGGCGGCAGTGGCGCATGGGATTCTGCTGGTGACCGGGGAGG
CAGGGAGGCTCGGGATGACGGTGGTGGTAGTATCGGGGACGGGTCGAACG
TGAGGCTGCACACAGACGACGGCCGATTTTCACCGCCTTCGCGGCCTCGT
GTCTCGGCCACGGGAGAGCTTAGCCCCGTTCCGCTCCGCGCGAAGTTCAC
GCTCCGGCCTCCCAGCGCCCCCGCTCAACCCGGAAGCAGTTCCGGCGGCG
GCGGTGGATTTGGCGGAGGCGGGGACAAAGGAGGCAGCGGCAGCAGCAGT
AGTTGCTGCGAAGGCGGCGGCTGCGGCGGCAGTGGCGCATGGGATTCTGC
TGGTGACCGGGGAGGCAGGGAGGCTCGGGATGACGGTGGTGGTAGTATCG
GGGACGGGTCGAAC
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