mRNA_L-elsbetiae_contig7138.15954.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7138.15954.1
Unique NamemRNA_L-elsbetiae_contig7138.15954.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 2.950e-80
Identity = 155/218 (71.10%), Postives = 167/218 (76.61%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAGSGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQSSPTSSLAVLGRRVSQLSCGVFETRNIIEEHEVVASTVLGMGALTTDSKKNKPDSAEG--DAGGE----SWSAPNGDGDRNG-SDSVDANDTLFIKELRVKSQEWEANGRSFVRRPXXXXXX--AIDRAPER-RMLI--DGGPFSKTA 618
            RIRI+ VDDWCIDYSDT  PVLWIIS HAWYKVAGSGWWDFVAPH  YAP FEPSRK FAL CLVARALQSSPTSSLA +GRRVSQ++ GVFETR+I+EEHEVVA+T+ GMGAL+T   K KPD+AEG  D GGE    SW  P  +GD NG SDSVDA DTLF+KEL  K QEWEANGRSFVRRP        AI R P   RML   D GPFSK A
Sbjct:  156 RIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGMGALST---KKKPDNAEGMLDGGGEDGPGSW--PGANGDNNGCSDSVDAKDTLFLKELGTKGQEWEANGRSFVRRPPPPPIPSPAITRPPPNSRMLTAPDRGPFSKPA 368
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 4.070e-78
Identity = 156/218 (71.56%), Postives = 170/218 (77.98%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAGSGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQSSPTSSLAVLGRRVSQLSCGVFETRNIIEEHEVVASTVLGMGALTTDSKKNKPDSAEG--DAGGE----SWSAPNGDGDRNGS-DSVDANDTLFIKELRVKSQEWEANGRSFVRRPXXXXXXAIDRAP---ERRMLI--DGGPFSKTA 618
            RIRI+ VDDWCIDYSDT  PVLWIIS HAWYKVAGSGWWDFVAPH  YAP FEPSRK FAL CLVARALQSSPTSSLA +GRRVSQ++ GVFETR+I+EEHEVVA+T+ GMGAL+T   K KPD+AEG  D  GE    SW  P  +GD NGS DSVDA DTLF+KEL  K QEWEANGRSFVRRPXXXXXX         +RRML   D GPFS+ A
Sbjct:  277 RIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGMGALST---KKKPDNAEGMLDGVGEDGPGSW--PGANGDNNGSSDSVDAKDTLFLKELATKGQEWEANGRSFVRRPXXXXXXXXXXXXXXXDRRMLTAPDRGPFSRPA 489
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A6G0WE00_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE00_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.230e-8
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFA----LACLVARALQSSPTSSL-AVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            RI +  + DWC+DYSD   P LW+I+KHAWYK+AG  SG    + PH +Y P+F   R +F     +A ++   L  +P  S  A L + + Q   G +   T+ +IE ++ +AS +  +G
Sbjct:  506 RIWLPEISDWCLDYSDGD-PTLWVITKHAWYKIAGPISG----MLPHWSYRPHFTKPRLMFEACFHIAFVLREWLPKNPGLSYRATLQQVIEQSILGRYPLTTKFMIENYKFIASQLGSLG 621
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A8K1CUW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUW3_PYTOL)

HSP 1 Score: 62.0 bits (149), Expect = 4.250e-7
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ 210
            R+ +  + DWC+DYS+   P LW+I+ HAWYK+AG  SG    V PH +Y   F+  RK+F  + LVA  L+
Sbjct:  695 RVWLPEITDWCLDYSEGD-PTLWVITPHAWYKIAGPLSG----VLPHPSYRTKFQHVRKLFEASYLVAYVLK 761
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A484E7M7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7M7_BRELC)

HSP 1 Score: 58.5 bits (140), Expect = 5.870e-6
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQS 213
            R+ +  + DWC+DY+D   P LW+I+ HAWYK+AG  SG    + PH +Y   F+  R +F  + LVA  L++
Sbjct:  659 RVWLPEITDWCLDYADGD-PTLWVITPHAWYKIAGPLSG----LLPHPSYRQTFKHVRYLFEASYLVAYVLKA 726
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A418E126_9STRA (Bromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E126_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.200e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ-----SSPTSSLAVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            R+ +  + DWC+DY++   P LW+I+ HAWYK+AG  SG    V PH +Y  +F   R +F     +A  L+     +   S  A L + + Q   G +   T+ +IE +  +AS +  +G
Sbjct:  110 RVWLREISDWCLDYTEGD-PTLWVITSHAWYKIAGPISG----VLPHWSYRRHFTKPRLLFEACFHIASVLREWLPKNRGLSYRATLQQVIEQSILGRYPLTTKFLIENYPFLASQMGSVG 225
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A3L6VB30_9STRA (Bromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VB30_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.700e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ-----SSPTSSLAVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            R+ +  + DWC+DY++   P LW+I+ HAWYK+AG  SG    V PH +Y  +F   R +F     +A  L+     +   S  A L + + Q   G +   T+ +IE +  +AS +  +G
Sbjct:  204 RVWLREISDWCLDYTEGD-PTLWVITSHAWYKIAGPISG----VLPHWSYRRHFTKPRLLFEACFHIASVLREWLPKNRGLSYRATLQQVIEQSILGRYPLTTKFLIENYPFLASQMGSVG 319
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A397FMS6_9STRA (Bromo domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FMS6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.170e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ-----SSPTSSLAVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            R+ +  + DWC+DY++   P LW+I+ HAWYK+AG  SG    V PH +Y  +F   R +F     +A  L+     +   S  A L + + Q   G +   T+ +IE +  +AS +  +G
Sbjct:  548 RVWLREISDWCLDYTEGD-PTLWVITSHAWYKIAGPISG----VLPHWSYRRHFTKPRLLFEACFHIASVLREWLPKNRGLSYRATLQQVIEQSILGRYPLTTKFLIENYPFLASQMGSVG 663
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: A0A425DP58_9STRA (Uncharacterized protein (Fragment) n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DP58_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.430e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ-----SSPTSSLAVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            R+ +  + DWC+DY++   P LW+I+ HAWYK+AG  SG    V PH +Y  +F   R +F     +A  L+     +   S  A L + + Q   G +   T+ +IE +  +AS +  +G
Sbjct:   50 RVWLREISDWCLDYTEGD-PTLWVITSHAWYKIAGPISG----VLPHWSYRRHFTKPRLLFEACFHIASVLREWLPKNRGLSYRATLQQVIEQSILGRYPLTTKFLIENYPFLASQMGSVG 165
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Match: W4GBQ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBQ1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.770e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAG--SGWWDFVAPHSTYAPYFEPSRKVFALACLVARALQ-----SSPTSSLAVLGRRVSQLSCGVFE--TRNIIEEHEVVASTVLGMG 336
            R+ +  + DWC+DY++   P LW+I+ HAWYK+AG  SG    V PH +Y  +F   R +F     +A  L+     +   S  A L + + Q   G +   T+ +IE +  +AS +  +G
Sbjct:  553 RVWLREISDWCLDYTEGD-PTLWVITSHAWYKIAGPISG----VLPHWSYRRHFTKPRLLFEACFHIASVLREWLPKNRGLSYRATLQQVIEQSILGRYPLTTKFLIENYPFLASQMGSVG 668
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7138.15954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G6R7_ECTSI2.950e-8071.10Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L351_9PHAE4.070e-7871.56DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0WE00_9STRA1.230e-836.36Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CUW3_PYTOL4.250e-744.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E7M7_BRELC5.870e-641.10Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A418E126_9STRA6.200e-632.23Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A3L6VB30_9STRA6.700e-632.23Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A397FMS6_9STRA7.170e-632.23Bromo domain-containing protein (Fragment) n=3 Tax... [more]
A0A425DP58_9STRA7.430e-632.23Uncharacterized protein (Fragment) n=7 Tax=Aphanom... [more]
W4GBQ1_9STRA7.770e-632.23Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7138contigL-elsbetiae_contig7138:6702..10113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue3.5e-72
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons5
Model size840
Cds size837
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7138.15954.1prot_L-elsbetiae_contig7138.15954.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7138 6702..10112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.4875815-CDS-L-elsbetiae_contig7138:6701..67301622816792.4875815-CDS-L-elsbetiae_contig7138:6701..6730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 6702..6730 +
1691683817.0156417-CDS-L-elsbetiae_contig7138:6701..67301691683817.0156417-CDS-L-elsbetiae_contig7138:6701..6730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 6702..6730 +
1622816792.500604-CDS-L-elsbetiae_contig7138:7144..73301622816792.500604-CDS-L-elsbetiae_contig7138:7144..7330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 7145..7330 +
1691683817.0295208-CDS-L-elsbetiae_contig7138:7144..73301691683817.0295208-CDS-L-elsbetiae_contig7138:7144..7330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 7145..7330 +
1622816792.5109744-CDS-L-elsbetiae_contig7138:8133..82241622816792.5109744-CDS-L-elsbetiae_contig7138:8133..8224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 8134..8224 +
1691683817.0474038-CDS-L-elsbetiae_contig7138:8133..82241691683817.0474038-CDS-L-elsbetiae_contig7138:8133..8224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 8134..8224 +
1622816792.5214603-CDS-L-elsbetiae_contig7138:8947..91391622816792.5214603-CDS-L-elsbetiae_contig7138:8947..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 8948..9139 +
1691683817.0598297-CDS-L-elsbetiae_contig7138:8947..91391691683817.0598297-CDS-L-elsbetiae_contig7138:8947..9139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 8948..9139 +
1622816792.53256-CDS-L-elsbetiae_contig7138:9773..101121622816792.53256-CDS-L-elsbetiae_contig7138:9773..10112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 9774..10112 +
1691683817.0698893-CDS-L-elsbetiae_contig7138:9773..101121691683817.0698893-CDS-L-elsbetiae_contig7138:9773..10112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 9774..10112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7138.15954.1

>prot_L-elsbetiae_contig7138.15954.1 ID=prot_L-elsbetiae_contig7138.15954.1|Name=mRNA_L-elsbetiae_contig7138.15954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=279bp
RIRISRVDDWCIDYSDTQRPVLWIISKHAWYKVAGSGWWDFVAPHSTYAP
YFEPSRKVFALACLVARALQSSPTSSLAVLGRRVSQLSCGVFETRNIIEE
HEVVASTVLGMGALTTDSKKNKPDSAEGDAGGESWSAPNGDGDRNGSDSV
DANDTLFIKELRVKSQEWEANGRSFVRRPPPPPPPAIDRAPERRMLIDGG
PFSKTASARDLAADGRVVVGGGGARGGVAPGKGQPRSPRPGGPRPGASAG
VGVGVGVGVGVGVGGAQGKGPAGFSKHGG
back to top

mRNA from alignment at L-elsbetiae_contig7138:6702..10113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7138.15954.1 ID=mRNA_L-elsbetiae_contig7138.15954.1|Name=mRNA_L-elsbetiae_contig7138.15954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3412bp|location=Sequence derived from alignment at L-elsbetiae_contig7138:6702..10113+ (Laminarionema elsbetiae ELsaHSoW15)
CGCATCCGGATCAGCCGCGTGGATGACTGGTGAGCGAGGGGGGGGGTTAG
TTGTTTAGTAGGGGCGGCTTTGGCTGAACGTTAAAGGCGGGATGGAGAAA
GAGGGCTGGCTCCATTCCCTTGATTGACAAGATCTGTGTGCCCACCTTAC
GTAGCCATGACACGACCCCCCTCCGAAGCATCCACGTAATCCCTGAGGAT
CAGGGCCGATCGCACCATAGAGCAAGAAGGGGGCAGGCACGAGGGGCTGG
AAGGGAAGGGGAGGGAAGGGAACGGAAGGAGAATCAGGCGTCTATGTAGG
GCTTGGACTCCGGTCTCTCCATTTGTGGTACTGCTGTACTCTCGCAGACC
GCTCAGCTCTCACCCACCCTCTCGTGTCCTTGTTGCGTCTTCGCTGTCGG
TGGGCTGTTGTCTCCGTGCTCCTTTTCAACTAACCCTCGTCAGGTGCATC
GACTACTCGGACACCCAGCGGCCCGTGCTCTGGATCATCAGCAAGCACGC
GTGGTACAAGGTGGCCGGGTCGGGCTGGTGGGACTTCGTGGCCCCGCACT
CGACCTACGCCCCGTACTTCGAGCCTTCGAGGAAAGTCTTTGCTCTTGCC
TGCCTGGTCGCCCGGGCCCTGCAGTCGAGGTACGCACAACTGGTTGGTGC
GTACGCACTCGGCACTAAGCGGCGGAGTGGGACACGTCTATGGCTGTTGT
TCACGGCCGTGCCGTTTGCGTGGGTGTGCATCGCACACTTGGCTTAAATT
GGAACGCTTCAGGGAGGGTGCTGTTTTTACCTGTTCGGTTTTATATCTGC
TATGTCTGCCTGTGCGTCTCATGGCATGATAGGGTGTTGAGAGCAACGAA
CGCGGGTCCTGTAATCCCGCCCTGGTGTTTTACTCTTGCGTCAGATGCAT
ACATGCGCTGTCTCGCGCCCCCCGCGTATGTTGTTGATGATGGCGATGAT
GATGGCAATGGTAGGCCCACTAGTGATGTGTATTCGGCGACCGACGTTTT
GTTTTGGGGCATGGGTGACGCGGGCAAGGAAAATCCAGCACCCTACCTAG
CGCGTGTCGGCGTGTGCACGCTCGGTATGTTTTTGGTCGGTGTTTTCGCG
GTCTGTCTCGTATCGGACTGGTATCCCCCCCAAACTGAATAATTAGAGCT
TCTCATTGCACGCGATACGCTTGATAGTGATATACACTTGATGGTGACAG
CAGTGGTACTGATGAAGTGCTTTAACCCAGCTGCTCCTGGGGATCATCGC
CCGTATCGGGGTGTTGCCAGCTGCCTTCACCTCTTCTTTCTGGAAGGGCG
GTACTGCCGGAACGTAGTACTACCAGGTATTTTCCTCGTTTATGTTCCCC
GCCTTTCAAAACGGCCGGTGCTGTGTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGTGTGTGTGTGTGTGTACAGCCCTACTTCCAGCTTGGC
GGTGTTGGGGCGACGCGTATCGCAGCTGAGCTGTGGGGTCTTCGAGACGC
GCAACATTATCGAGGAGCACGAGGTATGCACGCTTGACCCGCGCCAGGTG
CTAGCACCAGGCAGCGTGTGCGCGGAATCTCAATCCCTGTTCAACGTATG
ACAGAGCTGCCGTGTACACCGGGTCGCGAAGCGCTACGATCTAGTTTTAC
TGCTCTCTTTTGTGCGGCCTTTGGCATCGTTGAGCCGCGACAATACTGGG
GTGTGTCTTTGAGCTGCAACGCTTTACCCAACAGAGAGCGAGGGTATGTC
TTACTCTGGCAGGGGCAAGGAAGCGAGTTTGTAAGTCTATTGACAACGCA
AGTAGTGTGAGAGGAGCTAGTGAAGGGGCGGCGGCCTCTGCCTGGCTTTT
CGAAGAGGTCAAAGCATGCATTTTTTTTCCAAGTACGATTATCAGCACTG
CTGTTATGTTGTCTCTTGGACAAGGTGAGCGGTTTCGTCTCGTGTGGTCG
GGTTCGGCCGACGGTTAATGTGCACTAGATCCCCAAAAAAATTGCAACAA
AGTATCTTGTTTCAAAACTACTTTTTGGGTAAATATAAATATTAATATCA
ATATTGATATTTTGACCGTGACGGAACAACACAGCACGATAAGCGCACCC
CAAGTTCCAGTCGAGCAGGCCGCACCCTTTGATGGTAATTGTGTTCAAAC
CCCTCCGCGTGCAAGCCTCCCAGCATGCACCGTCACCCGAAAGAGTCTTG
GCACCAACACTCAACAACGCACCAACCACTGCATGACCCGTCGAAGGTGG
TTGCGTCGACGGTTCTGGGGATGGGTGCCCTGACCACCGACAGCAAGAAG
AACAAGCCGGACAGCGCGGAAGGCGACGCTGGCGGCGAATCATGGTCGGC
ACCGAATGGCGACGGCGACAGAAACGGGTCGGACTCGGTGGACGCCAATG
ACACTCTTTTCATCAAGGAGCTCAGGGTCAAGTCGCAGGTGCGATCGCGG
GGTGGAGCGCAGGCAGGGATTGGGGGGCCACTTGGTGCTCTTTGTTCTTC
TGGGCTGTACATATGTATGTATGTATCTTTCGCAGGACGCAGAGTAGTTT
TTTTTTTGGCAGGGGGTATGTCCTCGCTGTGGCAGTCGCTCGGGACTATG
CGAATCGATGCCATGCGACGCCATTCAATCCGTCTTTTCTTGGCCTACAT
ACCGTAAGGGTTCGAGTCATTCGCACACCCCCTGGACGGGCTTTCAAAGC
TCGATTACTCCACGTCAAGAAAAGTGTCAAGTGCCGAAAAGGGGGTGCTG
GCGTTGGAAATATCTCGTCGATAGCTGTCCGAAAACGTGTCGTTTGGTGT
CGGCACCCCTCTTCGTTACGGACTAATCGAGCTCTAAACATCCACCGCAC
CCCCTGTGCGATCACTCCAACACTTACGGTACATTGCATGCACTCGGAAG
GACGGGTCCCTCTCCCGCCGTCGTGCGCCGTATTGCATAGAGTTAGGTTG
ACGCCAGCCAAACCCTCTCCCTCTTTGTTTCTATCTGGACCTTGGACCTT
GGAGCTCGCGCGGCGCGTGCCCTTCCACCTCTGACAAAACGCCTCGTGTG
TTTGTTTTACTCTCTCGTTCAGGAATGGGAGGCGAACGGCCGCTCCTTCG
TCCGCCGGCCGCCACCCCCCCCACCCCCTGCGATTGACCGAGCCCCCGAA
AGGCGAATGCTGATCGATGGAGGGCCTTTCTCAAAAACCGCTTCGGCAAG
AGATCTTGCCGCTGATGGTAGAGTCGTCGTTGGTGGTGGTGGTGCCCGGG
GCGGGGTGGCGCCGGGGAAGGGGCAGCCACGGAGCCCCAGGCCGGGCGGC
CCCAGACCAGGTGCTAGTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGTGT
TGGTGTTGGTGTTGGAGGCGCTCAAGGTAAGGGACCAGCTGGCTTTTCCA
AGCATGGCGGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7138:6702..10113+

>mRNA_L-elsbetiae_contig7138.15954.1 ID=mRNA_L-elsbetiae_contig7138.15954.1|Name=mRNA_L-elsbetiae_contig7138.15954.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1674bp|location=Sequence derived from alignment at L-elsbetiae_contig7138:6702..10113+ (Laminarionema elsbetiae ELsaHSoW15)
CGCATCCGGATCAGCCGCGTGGATGACTGCGCATCCGGATCAGCCGCGTG
GATGACTGGTGCATCGACTACTCGGACACCCAGCGGCCCGTGCTCTGGAT
CATCAGCAAGCACGCGTGGTACAAGGTGGCCGGGTCGGGCTGGTGGGACT
TCGTGGCCCCGCACTCGACCTACGCCCCGTACTTCGAGCCTTCGAGGAAA
GTCTTTGCTCTTGCCTGCCTGGTCGCCCGGGCCCTGCAGTCGAGGTGCAT
CGACTACTCGGACACCCAGCGGCCCGTGCTCTGGATCATCAGCAAGCACG
CGTGGTACAAGGTGGCCGGGTCGGGCTGGTGGGACTTCGTGGCCCCGCAC
TCGACCTACGCCCCGTACTTCGAGCCTTCGAGGAAAGTCTTTGCTCTTGC
CTGCCTGGTCGCCCGGGCCCTGCAGTCGAGCCCTACTTCCAGCTTGGCGG
TGTTGGGGCGACGCGTATCGCAGCTGAGCTGTGGGGTCTTCGAGACGCGC
AACATTATCGAGGAGCACGAGCCCTACTTCCAGCTTGGCGGTGTTGGGGC
GACGCGTATCGCAGCTGAGCTGTGGGGTCTTCGAGACGCGCAACATTATC
GAGGAGCACGAGGTGGTTGCGTCGACGGTTCTGGGGATGGGTGCCCTGAC
CACCGACAGCAAGAAGAACAAGCCGGACAGCGCGGAAGGCGACGCTGGCG
GCGAATCATGGTCGGCACCGAATGGCGACGGCGACAGAAACGGGTCGGAC
TCGGTGGACGCCAATGACACTCTTTTCATCAAGGAGCTCAGGGTCAAGTC
GCAGGTGGTTGCGTCGACGGTTCTGGGGATGGGTGCCCTGACCACCGACA
GCAAGAAGAACAAGCCGGACAGCGCGGAAGGCGACGCTGGCGGCGAATCA
TGGTCGGCACCGAATGGCGACGGCGACAGAAACGGGTCGGACTCGGTGGA
CGCCAATGACACTCTTTTCATCAAGGAGCTCAGGGTCAAGTCGCAGGAAT
GGGAGGCGAACGGCCGCTCCTTCGTCCGCCGGCCGCCACCCCCCCCACCC
CCTGCGATTGACCGAGCCCCCGAAAGGCGAATGCTGATCGATGGAGGGCC
TTTCTCAAAAACCGCTTCGGCAAGAGATCTTGCCGCTGATGGTAGAGTCG
TCGTTGGTGGTGGTGGTGCCCGGGGCGGGGTGGCGCCGGGGAAGGGGCAG
CCACGGAGCCCCAGGCCGGGCGGCCCCAGACCAGGTGCTAGTGCTGGTGT
TGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGAGGCGCTCAAG
GTAAGGGACCAGCTGGCTTTTCCAAGCATGGCGGCGAATGGGAGGCGAAC
GGCCGCTCCTTCGTCCGCCGGCCGCCACCCCCCCCACCCCCTGCGATTGA
CCGAGCCCCCGAAAGGCGAATGCTGATCGATGGAGGGCCTTTCTCAAAAA
CCGCTTCGGCAAGAGATCTTGCCGCTGATGGTAGAGTCGTCGTTGGTGGT
GGTGGTGCCCGGGGCGGGGTGGCGCCGGGGAAGGGGCAGCCACGGAGCCC
CAGGCCGGGCGGCCCCAGACCAGGTGCTAGTGCTGGTGTTGGTGTTGGTG
TTGGTGTTGGTGTTGGTGTTGGTGTTGGAGGCGCTCAAGGTAAGGGACCA
GCTGGCTTTTCCAAGCATGGCGGC
back to top