mRNA_L-elsbetiae_contig7136.15951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7136.15951.1
Unique NamemRNA_L-elsbetiae_contig7136.15951.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.370e-51
Identity = 124/306 (40.52%), Postives = 177/306 (57.84%), Query Frame = 2
Query:    2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQ-KILAPRHQRAPSNMMDEVERGQSRAGCA-------DEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEI---FLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVVHLE 886
            ++LME A+WS   AVG+ RT  V+ T+   S   TV+A   +  +L  V D  ++S DI +VG + +++  + A L  + +  P+ +KY  IV  ++S PPIV+L NIRPVRE+ R      RS    ++ +P  + +  N+   V   ++            D++R+ +IM F PL  AFGE CR++LC ESF+FLVDV +FK  D I +    E    F  +  +LA+VN YIK  SH E+NI S TKR IM   KF  YA+L  + RK+IF PAE EI  +L +NLL+KFL S+ Y  VV  E
Sbjct:  134 YILMEGALWSGVAAVGVSRTGGVLATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIRVVGMLLLLMSCVHAGLHYV-SMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK--DLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.180e-50
Identity = 126/318 (39.62%), Postives = 185/318 (58.18%), Query Frame = 2
Query:    2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQT-REGGRSTVQKILAPRHQR-----------APSNMMDEVERGQSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLD-----YTRFLA----IVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877
            ++L+E+ VW AA   G  R A V+  +A  S   T++A   L  QLK +HD +N+ RDI LVG + ++   +F A+ +L     L FKY  ++F +IS PPIV+++NIRP++E+L    R      VQ +LA   +R           A +  + +     SR    + +R+A IM + PL  AFGE C+K+LCSESF+FL+D ++F+ +  I+EG      NG    +     +T  L     +VN YIK  +  EINIGS+TKRDIM+  K E +ASLD D R  IF  AE EI ++L++NL+++FLAS +YK  V
Sbjct:  125 YLLVEMVVWLAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICLPVFTAIRVLWGSI-LAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPSRHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGV--IVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAV 439          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.080e-48
Identity = 121/305 (39.67%), Postives = 175/305 (57.38%), Query Frame = 2
Query:    2 WVLMEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQKIL-APRHQRAPSNMMDEVERGQ-------SRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAI--DRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVVHLE 886
            ++LME A+WS   AVG+ RT  V+ T+   +   TV+A   L  +L  V D  ++S DI +VG + +++  +   L  L +  P  ++Y  I   ++  PPIV+LINIRPV E+ R      RS     L +P  +R+  N+   V   +       +     +++R+ +IM F PL  AFGE CR++LC ESF+FLVDV +FK +  D   E    + F  +  +LAIVN YIK  SH E+NI S TKR IM + KF  YA+L  ++RK++F PAE EI  +L +NLL+KFL S+ Y  VV  E
Sbjct:  134 YILMEGALWSGVAAVGLSRTVGVLVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILLLMTCVHKGLPYL-SMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSE-KSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.130e-43
Identity = 111/288 (38.54%), Postives = 165/288 (57.29%), Query Frame = 2
Query:   92 SLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQT-REGGRSTVQKILAPRHQRAPSN--------MMDEVERGQSRAG---CADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLDY---TR------FLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877
            S+  T+ A   L  QLK +HD +N+ RDI LVG + ++   +F A+ +LP    L FKY ++V  ++S P IV+++NIRP++E+L    R      VQ +LA   +R   +        +  +V +  S+ G     D +R+A IM + PL  AFGE C+K+ CSE   FL+D ++F+ +  I+EG      NG    +    TR        A+VN YIK  +  EINIGS+TK DIM+  K E + SLD D R+ IF  AE EI ++L++NL+++FLAS +YK  V
Sbjct:    8 SVFITITAVVCLGRQLKRIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLS-TLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGV--IVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAV 289          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.810e-28
Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 2
Query:  320 NIRPVREILRQTREGG-RSTVQKILA--PRHQRAPSNMM--DEVERG-------QSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEG-----GNGEIFLDY---TRFLA----IVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877
            NIRP++E+L   R  G    VQ +LA   R +R  ++ +  +EV           SR    D +R+A IM + PL  AFGE C+K+LCSESF+FL+D ++F+ +  I+EG      NG    +    TR L     +VN YIK  +  EINIGS+TK DIM+  K E +ASLD D RK IF  AE EI ++L++NL+++FL S +YK  V
Sbjct:  129 NIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHSREPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGV--IVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAV 336          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.690e-28
Identity = 88/216 (40.74%), Postives = 123/216 (56.94%), Query Frame = 2
Query:  320 NIRPVREILRQT-REGGRSTVQKILA--PRHQRAPSNMMDEVERGQ--------SRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSE-----SFEFLVDVTKFKAIDRILEG-------GNGEIFLD---YTRFL----AIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVV 877
            NIRP++E+L    R      VQ +LA   R +R+ + +  E             SR    D +R+A +M + PL  AFGE C+K+LCSE     SF FL+D +KFK +  I+EG       G+ E  ++   +T  L    A+VN YIK  +  EINIGS+TK DIM+  K E +ASLD D RK IF  AE EI  +L++N++++FLAS +YK  V
Sbjct:   28 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRSSAAIGGEAVTADVTHNPSRHSRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGV--IVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAV 241          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.260e-20
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  470 EDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKA-IDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIF 790
            E R+A IM F PL  AFGE CRKALC ESF+FLVDV+KFK+ +    +GGN      Y  F+ IV+ YI+ +S+ E+NI S TK++I+ F     YASL   K + +F
Sbjct:   16 ETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAHQGGNDS----YEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASLGTAKSRCLF 119          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.850e-17
Identity = 86/292 (29.45%), Postives = 137/292 (46.92%), Query Frame = 2
Query:   56 RTASVVQTVARSSLIFTVLAATWLAYQLKNVHDSTNLSRDIGLVGRVFVVIFVIFAALML-------LPNPYPLVFKYANIVFQSISSPPIVYLINIRPVREILRQTRE-----GGRSTVQKIL--APRHQRAPSNMMDEVE-----RGQSRAGCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAV 874
            R A  +  V    ++ T+ A+  L  +L    D  ++S +I  VG         FA L L       +P     V  +  I+F +      V++ NI+PVR++L++  +     GG +++   +    R      ++M+E +               +D++  I+RF PL  AFGE CRKALCSES  FL   T  K     L+  + +    + RF  IV+ YI+  S  E+NI S TK  I+  T    +  L  D    I + A  EI K+L+ENL +KF ++E++K +
Sbjct:  201 RVAGAMIAVIAVDMLLTIGASLMLVGKLARTKDMFDMSVEIRSVGG--------FALLALGELMGIVIPMVPATVLNFYLILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFL---TAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEI 481          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 6.590e-15
Identity = 63/215 (29.30%), Postives = 101/215 (46.98%), Query Frame = 2
Query:  251 PLVFKYANIVFQSISSPPIVYLINIRPVREILRQTREGGRSTVQKILAPRHQRAPSNMMDEVERGQSRAGCADED-------RIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAV 874
            P + +   +VF  +     +++ NI+PVRE+LRQ+ +     V        +R+ S  +           C           R+  I+   PL  AF   C+KALC ES   L +V  F+     +E  +  +F +   F+AIVN +IK  S  E+NI    +  +M       +  LD D R +IF  AE +  ++L +NLL+KF A+E Y+ +
Sbjct:  305 PTLMRMHMVVFMVVRFHTALWITNIKPVREVLRQSSDRKDYHVPWFPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGRLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEADDDALFKE---FVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRI 516          
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-11
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  458 GCADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILEGGN---GEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYASLD 766
            G   E  +AAIM F PL  AFG   RK LCSESF+FLVDV++F ++     G +   G+  LD   F  IV  YI  +S+ EINI S TK+ +  F +   YASLD
Sbjct:    2 GHLHETPLAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLD--EFNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLD 105          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7136.15951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTR6_ECTSI3.370e-5140.52Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5JIZ3_9PHAE2.180e-5039.62RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX00_9PHAE2.080e-4839.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P5_ECTSI3.130e-4338.54RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE1.810e-2842.38RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD29_9PHAE9.690e-2840.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K562_9PHAE9.260e-2049.07RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE1.850e-1729.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI6.590e-1529.30RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JDD6_9PHAE3.200e-1146.23RGS domain-containing protein (Fragment) n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7136contigL-elsbetiae_contig7136:4020..8512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D8LTR6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size961
Cds size885
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.2705288-UTR-L-elsbetiae_contig7136:4019..40851622816792.2705288-UTR-L-elsbetiae_contig7136:4019..4085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 4020..4085 -
1691683816.8794835-UTR-L-elsbetiae_contig7136:4019..40851691683816.8794835-UTR-L-elsbetiae_contig7136:4019..4085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 4020..4085 -
1622816792.3687496-UTR-L-elsbetiae_contig7136:8502..85121622816792.3687496-UTR-L-elsbetiae_contig7136:8502..8512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 8503..8512 -
1691683816.9684837-UTR-L-elsbetiae_contig7136:8502..85121691683816.9684837-UTR-L-elsbetiae_contig7136:8502..8512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7136 8503..8512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.2828043-CDS-L-elsbetiae_contig7136:4085..41541622816792.2828043-CDS-L-elsbetiae_contig7136:4085..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 4086..4154 -
1691683816.8912807-CDS-L-elsbetiae_contig7136:4085..41541691683816.8912807-CDS-L-elsbetiae_contig7136:4085..4154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 4086..4154 -
1622816792.2949498-CDS-L-elsbetiae_contig7136:4913..49701622816792.2949498-CDS-L-elsbetiae_contig7136:4913..4970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 4914..4970 -
1691683816.9013903-CDS-L-elsbetiae_contig7136:4913..49701691683816.9013903-CDS-L-elsbetiae_contig7136:4913..4970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 4914..4970 -
1622816792.3072066-CDS-L-elsbetiae_contig7136:6026..62421622816792.3072066-CDS-L-elsbetiae_contig7136:6026..6242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 6027..6242 -
1691683816.9110994-CDS-L-elsbetiae_contig7136:6026..62421691683816.9110994-CDS-L-elsbetiae_contig7136:6026..6242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 6027..6242 -
1622816792.321271-CDS-L-elsbetiae_contig7136:6583..68181622816792.321271-CDS-L-elsbetiae_contig7136:6583..6818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 6584..6818 -
1691683816.922466-CDS-L-elsbetiae_contig7136:6583..68181691683816.922466-CDS-L-elsbetiae_contig7136:6583..6818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 6584..6818 -
1622816792.332944-CDS-L-elsbetiae_contig7136:7544..76501622816792.332944-CDS-L-elsbetiae_contig7136:7544..7650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 7545..7650 -
1691683816.9313078-CDS-L-elsbetiae_contig7136:7544..76501691683816.9313078-CDS-L-elsbetiae_contig7136:7544..7650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 7545..7650 -
1622816792.3460054-CDS-L-elsbetiae_contig7136:8020..81751622816792.3460054-CDS-L-elsbetiae_contig7136:8020..8175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 8021..8175 -
1691683816.9409058-CDS-L-elsbetiae_contig7136:8020..81751691683816.9409058-CDS-L-elsbetiae_contig7136:8020..8175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 8021..8175 -
1622816792.3580258-CDS-L-elsbetiae_contig7136:8455..85021622816792.3580258-CDS-L-elsbetiae_contig7136:8455..8502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 8456..8502 -
1691683816.9527547-CDS-L-elsbetiae_contig7136:8455..85021691683816.9527547-CDS-L-elsbetiae_contig7136:8455..8502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7136 8456..8502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7136.15951.1prot_L-elsbetiae_contig7136.15951.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7136 4086..8502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7136.15951.1

>prot_L-elsbetiae_contig7136.15951.1 ID=prot_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
MEIAVWSAAWAVGIPRTASVVQTVARSSLIFTVLAATWLAYQLKNVHDST
NLSRDIGLVGRVFVVIFVIFAALMLLPNPYPLVFKYANIVFQSISSPPIV
YLINIRPVREILRQTREGGRSTVQKILAPRHQRAPSNMMDEVERGQSRAG
CADEDRIAAIMRFHPLTLAFGEICRKALCSESFEFLVDVTKFKAIDRILE
GGNGEIFLDYTRFLAIVNCYIKYDSHLEINIGSNTKRDIMDFTKFEEYAS
LDPDKRKEIFNPAELEIIKLLKENLLSKFLASEEYKAVVHLESS*
back to top

mRNA from alignment at L-elsbetiae_contig7136:4020..8512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7136.15951.1 ID=mRNA_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4493bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:4020..8512- (Laminarionema elsbetiae ELsaHSoW15)
CTGGGTGCTCATGGAGATTGCCGTGTGGTCAGCGGCTTGGGCGGTGGGTA TACCAAGGTGCGGGGATTTGCAGAGGTCGCAACAGTCTTGGTGTCCACTG AGCTGTCATCCAGTGGACGATGAACAGATTCCAAACGAACCATCAAGAAT TCCGAGGGGAGAGAGAAGGGAAACAGGTTGATGCGGGGAATGATGACTCT CAGACAATAGCAGTAGTGTAGATGGGGCCAGACAAGCTACATGCTTGTAG ACATGTATACACATTTTGATGCCAAGGTTTTCCTTTGCTAAGGCTCCTTC CTCCTCTGCTTGCTCTATCTCGCCACATTGCTCTCAGAACTGCGAGCGTG GTGCAAACGGTAGCACGGTCTTCGCTTATCTTCACGGTCTTGGCGGCCAC GTGGCTCGCCTACCAGCTGAAGAACGTCCATGACTCGACCAACCTGAGCC GGGATATAGGGCTGGTCGGGAGAGTTTTCGTAGTGATATTCGGTGAGAAG GGGGTGTATCTTTGCAGTTGCATCTTTGCGCCGCTTTGTCCGAAACCCAG ATCTATGTTGCACGCAGGTGCAGTGGTGCTCTGTATCATACCCCCCGATC CAAAATCCATCGCTGTAGCCGTACCAACTGTTCTCTCACCACAATTTACA CGGAAAGGTCCCAAATGAGAGGGCATCAAATGTATAGCCACGCCTCTTCC GTGAATCTGTCAACTCGGCAGAGGACCCACTATATACATGCATGCGCCTT TGACATTCTCCTGGGGCAACGAGTATCGCTTCAGTGGTCACGGGTGACAT TCGGGCCCACCAACCTGATTTTGACGGTCGTCGTTGCCTTTCTTCGCCTG CCGTGTCAACAGTTATCTTCGCAGCCCTGATGCTCCTCCCGAATCCCTAC CCGCTGGTATTCAAGTACGCCAACATCGTCTTCCAGTCGATCTCCAGTCC CCCCATCGTATATCTCATGTGGGTCGCAACGTGCAAGCCGGGCTTTTCAC TTAAATAATGGTACATGCTGCCTTGGAGCATGATCACCTTCGCGTGGCAA TACAGAAGTCTTCCTTCTTCTAGCCTCGGAGTAAAATGCCGTGCAGATTT TAAACCGCGGGTGATCTTGGGGGTAAAAACAATTATTCGGTGTTCCTTTT CCAAGAGTTCCTTTTTTCAGGTCAAGTCAAATCCACTGGAGGAGGGGTCC ACCCCCCCCCCCCTCCAGTGTGACCCCCGTCGGGTCGGTCGTCTAGCTAG TCGTAGTGGAGTATGGGGGTCAGTGAGGCAGACGACGAATATGCCAATAA TGGAAGGAGAAAAACAAATCTGCGGACTGTTTTCTGAACCCCATCGCCAC GGATGACGACATAAAACCAATAAAACCCCTACACGCCAACATAAATACCG TTTGCATGACGCTCGGGCACGAAATACTTCTTGGCGTACCTCCACCGCTA CCGCGGGCGAAAATCCAACCCGCTGCAGGCGTTGCCATTTATCTCGTTTG CTTATTTTGTCATGTTGTGCGAATAACGAAAATACCCCCCGCACACACAC ATGATCGATCGCGTGGAAGCGGAACGTTCCCTGCTCCATTCCGCGCCGGC TCCAACCCTACCAATCCCCACCGTCGCCAACCTGAACGAATCGGCAGAGA CTTACCTCCAAAGCACCCGTGCCTTGTCGCTACTACTGTCGCAGCAACAT CCGGCCAGTTCGAGAGATTCTGCGACAAACCCGAGAGGGCGGACGCAGCA CCGTCCAGAAAATACTCGCCCCGCGACACCAGAGGGCGCCCAGCAACATG ATGGACGAAGTCGAACGCGGCCAAAGTCGTGCGGGATGCGCCGACGAAGA TCGGATAGCCGCCATCATGAGGTTCCACCCCTTGACGCTAGCTTTCGGCG AGATTTGTCGCAAGGCGCTTTGCAGCGAGGTAACGCGTTAGATACATGCT TTAGGGCGCAGAACCGCGTTGATGTCCTCTCCTCTCTCGGTCTGCGTTGG TTGATGCGGTGCCAACGTAACAGAAACCAGGCCCGTGGCGTTCAGTACCC CAGGATGACCACCTCTCCAAGATCAGGTCGACATCACTGATAGTCTACGC ACGTGCACCTCTTTGTGCATGGGTTTTCGTTGGCACCACCTGGGAGAGTT TTGGTGGGAGACCCTTCGATGAAGTCTAACTCTGAACACGCTTCACTGCT TACCCATGGCCCTCCCACCGTCGCCCCCCCCCCCCGTCGCCCCCACCCGA TCGATGGATTGGGAGCTCAGTCGTTCGAGTTCCTTGTCGACGTGACGAAG TTTAAGGCAATCGATCGGATTTTGGAGGGAGGGAACGGCGAGATATTTCT CGATTATACCAGGTTTCTTGCCATCGTGAACTGCTACATCAAGTACGACT CTCACCTAGAGATCAACATAGGATCCAACACCAAGCGCGATATCATGGAC TTCACCAAATTCGAGGAGTACGCTTCACTTGACCCCGTGAGTTAAACAGG CTCGTACACATGGATAGCCTTGGATGTTGCCGTAAATGCGAACACATTCG GGTCACTCGCTTGCCTTGATTCATTGGTGTTTTTATCTCAGCGCGGCAAG CGGCCTTGGTCGAGTTGGGCGAACACTCACCTGGCGTTTTTGGCTTTGCC TGCATAGTCTGGGTTGACTTTTCAATTCCAATCCAGTGATTCAGTTATGT ACCGGCTGTCTGCAACTCTGAAAGCTTTTATGTCATATAATGACGGCTTC GAGAGTCTGAAGGGGCTGCTCTGAGTCATCCCGCCCCTTTTCGTTTTGAC GGGACAGTTCTGCTCTTGCGGGCAACAAATGTCTTCAAGCATGTGAACAA GGGAAAAGTCTGTATTCTGTACTCTACATAGCTCGCGCTGAAGATTCTCG CATTTCGCCTTTCTTTTTTTTCTTTTTTTCTTCTTTACATTTATTTCCAG TGCTCGATGAGCTCCCGGTCACGAGGACATCTTGGCAGAGTACTGAACCG TGGTCACACAGAAGGGTTCCTTTCCCCAAGGCCCCCACTTCCCCCCCCCA TTTTGTGGTGCTTGCCTAAGATTTTTGTCGCGAGAAGGTTCAGCCGTCCC TTTCCCCCGTCGACGGTGAGGTCGAAGTTTGTGCACACACGCTGAGCGCT ATCCACTGACAGGGACGGAAGCGAGAGGGAAAACTTATTTTCGCAAGAAA GAGTCGCTTCCGCTGAGATTCGAACTCACGACCTGCCTGCTAGAAGATGT TCGGGGGTACTAAGCGTTTCGCCTGGCGGGCTATTTAGCCGTGTTTTTTT CGCCTAACAAACCGATCAATATCTCGCTCTTCTGATGAACCCAAACGTTT TTTAGTCGGCTATGTAGCTCTTGCAGCCGTCCGTGGCTTGTAGCCCATCC GGTAGATCAAACAGTCGGACGGAGCTTACAGCTCACACAATGGGACGGCA TGGTACTCGCCCATCCGGCAAGGTGGATTATGTTCTGAAGGTCGCTGGCC ATTGTCGTATCCGTGGCAACCACTGCTGCTGTTTTTGCACAGGACAAGCG CAAGGAAATCTTCAACCCTGCGGAGTTGGAGATCATTAAACTGTTGAAGG TGAGACGACGGCAGTCAGTAAATGTTTTGCGACGAATCGTGGAGTCGTCT CTTGCCTACGGAGTACGTACCGTGGTCCCACGTGGTCATGCATGCATATG CGTAACTCTTAGCACGCCCCGCTTACCGTAGTAGTGCGGGCTATCGCACA GGTCGAGGCTATCGTACCCTTTGCGAAAACAAAGCGAGTTTGAAGAGATT TAGTCGGGTTTTCTCGCACAGGGGTCACCCCTCTATGTGAATGCGATAAA TCCCCCCCCCGACTAAAAACCACTTTCGGGTGTGAGGTTGCGTGATACCG CGAGTGGGTCCAGGGGCACACCCCAAGTTGCATCCGGTTCGTGTATTTGT GTGCGGTGTGCGTGCGTACTTTTAAGAATCGTGCAAACCGGCTAGGTATA GATAAGTGAGGCTATGAATGAAAACGTTCGCAGCTCATTTTCAGCGGTAC ACAAGTGGTATTTATCAGTAATAAAGACACTTTGATTTCTTCAGACGCGC ATAGGGAGCTATCGCACAGGGGCGTTGCGCTGCAACAGCCGAACCAAGCG TTTACTTCAATTTTATCAAGAGGGATCAGGCGCACCGCACGTGTCGGGGC TATCGCACTCCTGTGTGCGACAGAAGAGCCAGTTCTAAATTATTTACGAT AAAGTCGATCGCACACTGTCTGTGCGATAGCCCGCGCTATTAACGGCATG TACTTCGCTGCTTTGCAACGCCTATTCTTTTCGCGGTGCCCCCCGTCAAC CATTGCAGGAAAATCTTTTGAGCAAGTTCCTCGCCTCGGAGGAGTACAAA GCGGTCGTGCACCTCGAAAGTAGCTGAGTGGGAGGTGGAATGAGTTACTC AGGAAGTGGATGGAGCGTGGGAAATGGCCAGCAATCACCCGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7136:4020..8512-

>mRNA_L-elsbetiae_contig7136.15951.1 ID=mRNA_L-elsbetiae_contig7136.15951.1|Name=mRNA_L-elsbetiae_contig7136.15951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig7136:4020..8512- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATTGCCGTGTGGTCAGCGGCTTGGGCGGTGGGTATACCAAGATG
GAGATTGCCGTGTGGTCAGCGGCTTGGGCGGTGGGTATACCAAGAACTGC
GAGCGTGGTGCAAACGGTAGCACGGTCTTCGCTTATCTTCACGGTCTTGG
CGGCCACGTGGCTCGCCTACCAGCTGAAGAACGTCCATGACTCGACCAAC
CTGAGCCGGGATATAGGGCTGGTCGGGAGAGTTTTCGTAGTGATATTCGA
ACTGCGAGCGTGGTGCAAACGGTAGCACGGTCTTCGCTTATCTTCACGGT
CTTGGCGGCCACGTGGCTCGCCTACCAGCTGAAGAACGTCCATGACTCGA
CCAACCTGAGCCGGGATATAGGGCTGGTCGGGAGAGTTTTCGTAGTGATA
TTCGTTATCTTCGCAGCCCTGATGCTCCTCCCGAATCCCTACCCGCTGGT
ATTCAAGTACGCCAACATCGTCTTCCAGTCGATCTCCAGTCCCCCCATCG
TATATCTCATTTATCTTCGCAGCCCTGATGCTCCTCCCGAATCCCTACCC
GCTGGTATTCAAGTACGCCAACATCGTCTTCCAGTCGATCTCCAGTCCCC
CCATCGTATATCTCATCAACATCCGGCCAGTTCGAGAGATTCTGCGACAA
ACCCGAGAGGGCGGACGCAGCACCGTCCAGAAAATACTCGCCCCGCGACA
CCAGAGGGCGCCCAGCAACATGATGGACGAAGTCGAACGCGGCCAAAGTC
GTGCGGGATGCGCCGACGAAGATCGGATAGCCGCCATCATGAGGTTCCAC
CCCTTGACGCTAGCTTTCGGCGAGATTTGTCGCAAGGCGCTTTGCAGCGA
GCAACATCCGGCCAGTTCGAGAGATTCTGCGACAAACCCGAGAGGGCGGA
CGCAGCACCGTCCAGAAAATACTCGCCCCGCGACACCAGAGGGCGCCCAG
CAACATGATGGACGAAGTCGAACGCGGCCAAAGTCGTGCGGGATGCGCCG
ACGAAGATCGGATAGCCGCCATCATGAGGTTCCACCCCTTGACGCTAGCT
TTCGGCGAGATTTGTCGCAAGGCGCTTTGCAGCGAGTCGTTCGAGTTCCT
TGTCGACGTGACGAAGTTTAAGGCAATCGATCGGATTTTGGAGGGAGGGA
ACGGCGAGATATTTCTCGATTATACCAGGTTTCTTGCCATCGTGAACTGC
TACATCAAGTACGACTCTCACCTAGAGATCAACATAGGATCCAACACCAA
GCGCGATATCATGGACTTCACCAAATTCGAGGAGTACGCTTCACTTGACC
CCTCGTTCGAGTTCCTTGTCGACGTGACGAAGTTTAAGGCAATCGATCGG
ATTTTGGAGGGAGGGAACGGCGAGATATTTCTCGATTATACCAGGTTTCT
TGCCATCGTGAACTGCTACATCAAGTACGACTCTCACCTAGAGATCAACA
TAGGATCCAACACCAAGCGCGATATCATGGACTTCACCAAATTCGAGGAG
TACGCTTCACTTGACCCCGACAAGCGCAAGGAAATCTTCAACCCTGCGGA
GTTGGAGATCATTAAACTGTTGAAGGACAAGCGCAAGGAAATCTTCAACC
CTGCGGAGTTGGAGATCATTAAACTGTTGAAGGAAAATCTTTTGAGCAAG
TTCCTCGCCTCGGAGGAGTACAAAGCGGTCGTGCACCTCGAAAGTAGCTG
AGAAAATCTTTTGAGCAAGTTCCTCGCCTCGGAGGAGTACAAAGCGGTCG
TGCACCTCGAAAGTAGCTGA
back to top