mRNA_L-elsbetiae_contig7132.15945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7132.15945.1
Unique NamemRNA_L-elsbetiae_contig7132.15945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.430e-19
Identity = 68/163 (41.72%), Postives = 82/163 (50.31%), Query Frame = 1 
Query:    1 IGPVALFGLLGITFLVGCKK----RTLQMDMARPRRWNMISVGPATTKDRIDVSSSGRSRVTTGTSETSN-TASPRPTTR------------------------RFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            IGPV L  LLG TF +G +     R + M   R      +S   A T    D   SG  R   G S+++  TAS                              R S R+++   P D  D+EQ+ LWELFARHTTM LIILYLVY+QVSTVVFQAFAC+DFP
Sbjct: 1023 IGPVGLLLLLGFTFYLGARPVRTGRVIDMSF-RNNTSTSVSSATAATLAAYDSGISGSVRPRAGASDSARGTASTTAXXXXXXXXXXXXXXXXXXXXXXXQGRARPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFP 1184
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.040e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  226 RFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            R S R+++ + P D  D+EQ+ LWELFARHTTM LIILYLVYSQVSTVVFQAFAC+DFP
Sbjct:  326 RPSARRVWRSGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFP 384
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.430e-18
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  226 RFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            R S R+++   P D  D+EQ+ LWELFARHTTM LIILYLVYSQVSTVVFQAFAC+DFP
Sbjct: 1592 RPSARRVWRNGPGDESDIEQNHLWELFARHTTMMLIILYLVYSQVSTVVFQAFACEDFP 1650
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.080e-17
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:  226 RFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            R S R+++   P D  D+EQ+ LWELFARHTTM LIILYLVY+QVSTVVFQAFAC+DFP
Sbjct: 1393 RPSARRVWRNGPGDESDLEQNHLWELFARHTTMMLIILYLVYTQVSTVVFQAFACEDFP 1451
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.330e-16
Identity = 56/134 (41.79%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:    1 IGPVALFGLLGITFLVGCKKRTLQMDMARPRRWNMISVGPATTKDRIDVSSSGRSRVTTGTSETSNTASPRPTTRRFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            IGP+     LGITF VG   R  +     P   N  + G AT+  R+     GR +  +  S  S  A    T R  S+R +         + EQ RLW LFARHTT+ LI+LYLVY+Q+STVVFQ F+C+D P
Sbjct: 1094 IGPLLPLCFLGITFFVG--SRPAKKTNMSP---NTTAGGGATSGSRVGEVEEGRVQGASSRSMASVMAIGGATARAQSVRNLLRAKSGQQKNPEQERLWGLFARHTTIMLIVLYLVYTQISTVVFQTFSCEDLP 1222
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.170e-15
Identity = 62/140 (44.29%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:    1 IGPVALFGLLGITFLVGCKKRTLQMDMARPRRWNMISVGPATTKDRIDVSSSGRS----RV--TTGTSETSNTASPRPTTRRFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP 402
            IGP+     LGITF VG          +RP +   +S   ATT D     S GR     RV      S TS TA+     R  S+R        D  + EQ RLW LFARHTTM LI+LYLVY+Q+STVVFQ FAC+  P
Sbjct: 1327 IGPLVPLCFLGITFFVG----------SRPAKETNMSPN-ATTADGGASGSGGRELEEGRVQGACSGSTTSVTANSGAAAREPSVRSALRAKSGDRKNPEQERLWGLFARHTTMMLIVLYLVYTQISTVVFQTFACEHLP 1455
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BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.140e-8
Identity = 46/126 (36.51%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:    1 IGPVALFGLLGITFLVG---CKKRTLQMDMARPRRWNMISVGPATTKDRIDVSSSGRSRVTTGTSETSNTASPRPTTRRFSLRQIFNTMPEDAFDVEQHRLWELFARHTTMTLIILYLVYSQVSTV 369
            IGP+     LGITF VG    K+  +  +                 + R+  +SSG        S TS T++     R  S+R        D  + EQ RLW LFARHTT+ LI+LYLVY+Q+STV
Sbjct: 1134 IGPLVPLFFLGITFFVGSRPAKETNMSPNATAGGXXXXXXXXRELEEGRVQGASSG--------STTSVTSNRGAAARGPSVRSALRAKSGDPKNPEQQRLWGLFARHTTIMLIVLYLVYTQISTV 1251
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7132.15945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0A8_ECTSI1.430e-1941.72Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JI42_9PHAE3.040e-1872.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA9_9PHAE4.430e-1872.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI2.080e-1771.19Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI1.330e-1641.79Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE1.170e-1544.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI2.140e-836.51Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7132contigL-elsbetiae_contig7132:2214..3799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7132.15945.1prot_L-elsbetiae_contig7132.15945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7132 2215..3799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.7374158-CDS-L-elsbetiae_contig7132:2214..22471622816791.7374158-CDS-L-elsbetiae_contig7132:2214..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 2215..2247 -
1691683816.461225-CDS-L-elsbetiae_contig7132:2214..22471691683816.461225-CDS-L-elsbetiae_contig7132:2214..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 2215..2247 -
1622816791.7491825-CDS-L-elsbetiae_contig7132:2839..29231622816791.7491825-CDS-L-elsbetiae_contig7132:2839..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 2840..2923 -
1691683816.471171-CDS-L-elsbetiae_contig7132:2839..29231691683816.471171-CDS-L-elsbetiae_contig7132:2839..2923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 2840..2923 -
1622816791.761033-CDS-L-elsbetiae_contig7132:3514..37991622816791.761033-CDS-L-elsbetiae_contig7132:3514..3799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 3515..3799 -
1691683816.4809759-CDS-L-elsbetiae_contig7132:3514..37991691683816.4809759-CDS-L-elsbetiae_contig7132:3514..3799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7132 3515..3799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7132.15945.1

>prot_L-elsbetiae_contig7132.15945.1 ID=prot_L-elsbetiae_contig7132.15945.1|Name=mRNA_L-elsbetiae_contig7132.15945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
IGPVALFGLLGITFLVGCKKRTLQMDMARPRRWNMISVGPATTKDRIDVS
SSGRSRVTTGTSETSNTASPRPTTRRFSLRQIFNTMPEDAFDVEQHRLWE
LFARHTTMTLIILYLVYSQVSTVVFQAFACDDFP
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mRNA from alignment at L-elsbetiae_contig7132:2214..3799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7132.15945.1 ID=mRNA_L-elsbetiae_contig7132.15945.1|Name=mRNA_L-elsbetiae_contig7132.15945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1586bp|location=Sequence derived from alignment at L-elsbetiae_contig7132:2214..3799- (Laminarionema elsbetiae ELsaHSoW15)
ATAGGTCCAGTGGCACTATTCGGCTTACTTGGGATCACCTTTCTCGTCGG
CTGCAAGAAGAGGACACTCCAAATGGATATGGCTCGACCTCGACGATGGA
ACATGATATCTGTCGGCCCAGCGACCACTAAGGATCGCATCGATGTGAGC
AGCAGCGGGAGATCGCGCGTCACAACTGGCACCAGTGAGACATCAAACAC
GGCTTCTCCCCGGCCAACCACTCGTCGGTTTTCTCTCCGGCAAATCTTTA
ATACAATGCCTGAGGATGCCTTCGATGTGGAGCAGGTGTGTGCGGTGTAC
AACAGTAACGGGGGGGAGATCGTGCGTGGGTTCAAAAGCAACGGAAGCTA
GACGTTGAGAGCTGGGGAGATTGGTCGCTCCCCTACCTGCTGTCTATAAC
TTCTGTCTCGGTTGCACAATACCAGGGATGTATCATGAAATTCGTCGCAA
CTTAAGTCTATATTTCGGTTGTGCCGTTTCACTCATTTAGATATAATGAG
GTACACGCGGCGGTAGAACATACAGCAGTAGGACGGGATGATAAGCATTA
ACATTCAGCCTCTGCGGGGTGATCAAAATAATATGTTCGATCCTTGTTCC
AGTCGACACGTTCGCCTGTCGTGATATCCCTACATAGTCTGCGCCTCCGA
CCGTGTGATTACGTGTTGATTCGAAAGTTTGCGCAACCCTATTGGGGAGA
AAGAATCGCTATAGATCATCGTAGGCTTGTCCGGGTGACTGATACTGCCA
GTCGCAATTTGCCGGAGGTGAAGCACCAGGGTGCTTCCAGAGGGTGAGAA
AATTTTGTTTCGTCTTGCGTTGTCGCTCCGAAACTGCTGTGCGTTGGCGT
GTCCTGGTGTGTGCCTTCATTGTCAGCACCGCCTGTGGGAGCTGTTCGCC
CGGCACACGACCATGACCCTCATCATCCTCTACCTCGTCTACAGCCAGGT
GTCAACCGTGGTGAGCCTAATCCTTGAGTTGAAAGAGTGCCCAGCTGTCT
TTGTAAAGCTGCGTTGTGCCCAGTCTCTCCGTGTGAAGGAGTAGCATACA
CATGCCGGTCGCCCCATGCCTGAGGGTAGATGATGCAGGACTCTCCTCAC
CGGCAATAGGCGTGGGTTATAATTCGCCCTTCCGCTCCAGTTTCGCCACA
ATCGGGAGCATGTGCTCCGTACCTCACAACTCACGGAGATGGACACGTCT
TTTCTGCCGAGAAAGATAATTCACCACGACACGCGCTCCCTTCTCCCCTT
CCTCTTCCCTAAGTGGGGCACACCCGTGCTTGTTGCTGCGTGGAATTCCG
ATACATCTGGCCAAGAGTAATCTAAAGAATATGGGCGGGGCCCAAACACC
GTTCTCCGTGACAGGCATTGCCTTTGTATGAGTTGCCATACATATTAGTA
CCCAAGCATGCAACCGTGTACCTTCGTGCCGGACATGCTTCCATGCACGC
CATGCCCTGCCCTCGGCCCAGCAAAGCACCACGCGCCGTCTCGCCCCCAG
TCATAATTTGTAACACGCTGCGGCTGCCTCCTCTGACGATCTCGCACATC
AGGTGTTCCAGGCTTTCGCTTGCGATGATTTCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7132:2214..3799-

>mRNA_L-elsbetiae_contig7132.15945.1 ID=mRNA_L-elsbetiae_contig7132.15945.1|Name=mRNA_L-elsbetiae_contig7132.15945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig7132:2214..3799- (Laminarionema elsbetiae ELsaHSoW15)
ATAGGTCCAGTGGCACTATTCGGCTTACTTGGGATCACCTTTCTCGTCGG
CTGCAAGAAGAGGACACTCCAAATGGATATGGCTCGACCTCGACGATGGA
ACATGATATCTGTCGGCCCAGCGACCACTAAGGATCGCATCGATGTGAGC
AGCAGCGGGAGATCGCGCGTCACAACTGGCACCAGTGAGACATCAAACAC
GGCTTCTCCCCGGCCAACCACTCGTCGGTTTTCTCTCCGGCAAATCTTTA
ATACAATGCCTGAGGATGCCTTCGATGTGGAGCAGATAGGTCCAGTGGCA
CTATTCGGCTTACTTGGGATCACCTTTCTCGTCGGCTGCAAGAAGAGGAC
ACTCCAAATGGATATGGCTCGACCTCGACGATGGAACATGATATCTGTCG
GCCCAGCGACCACTAAGGATCGCATCGATGTGAGCAGCAGCGGGAGATCG
CGCGTCACAACTGGCACCAGTGAGACATCAAACACGGCTTCTCCCCGGCC
AACCACTCGTCGGTTTTCTCTCCGGCAAATCTTTAATACAATGCCTGAGG
ATGCCTTCGATGTGGAGCAGCACCGCCTGTGGGAGCTGTTCGCCCGGCAC
ACGACCATGACCCTCATCATCCTCTACCTCGTCTACAGCCAGGTGTCAAC
CGTGCACCGCCTGTGGGAGCTGTTCGCCCGGCACACGACCATGACCCTCA
TCATCCTCTACCTCGTCTACAGCCAGGTGTCAACCGTGGTGTTCCAGGCT
TTCGCTTGCGATGATTTCCCAGTGTTCCAGGCTTTCGCTTGCGATGATTT
CCCA
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