mRNA_L-elsbetiae_contig7123.15936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7123.15936.1
Unique NamemRNA_L-elsbetiae_contig7123.15936.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7123.15936.1 vs. uniprot
Match: A0A6H5KS38_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS38_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.370e-11
Identity = 37/96 (38.54%), Postives = 46/96 (47.92%), Query Frame = 2 
Query:  548 GHLNVLQWARENGCPWDEEVCKA---------------------AFEWTSPSPPVGEIIWTXXXXXXXXRFAAPNGHVEILEWARNNGCPXNQETC 772
            GHL VLQWAR NGCPWD+E                         +F       P+G+              AA NGH+E+L+WAR+NGCP N+ETC
Sbjct:   47 GHLGVLQWARNNGCPWDKETXXXXXXXXXLEIHPLERLRTDILRSFNGQKQRMPLGQ---------RYILSAAANGHLEVLQWARSNGCPWNEETC 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7123.15936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KS38_9PHAE7.370e-1138.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7123contigL-elsbetiae_contig7123:3126..4087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_004330.1
Exons3
Model size784
Cds size480
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7123.15936.1prot_L-elsbetiae_contig7123.15936.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7123 3430..4087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.895825-UTR-L-elsbetiae_contig7123:3125..34291622816790.895825-UTR-L-elsbetiae_contig7123:3125..3429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7123 3126..3429 -
1691683815.843237-UTR-L-elsbetiae_contig7123:3125..34291691683815.843237-UTR-L-elsbetiae_contig7123:3125..3429Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7123 3126..3429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.906407-CDS-L-elsbetiae_contig7123:3429..35401622816790.906407-CDS-L-elsbetiae_contig7123:3429..3540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3430..3540 -
1691683815.8524508-CDS-L-elsbetiae_contig7123:3429..35401691683815.8524508-CDS-L-elsbetiae_contig7123:3429..3540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3430..3540 -
1622816790.916143-CDS-L-elsbetiae_contig7123:3627..37491622816790.916143-CDS-L-elsbetiae_contig7123:3627..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3628..3749 -
1691683815.8612704-CDS-L-elsbetiae_contig7123:3627..37491691683815.8612704-CDS-L-elsbetiae_contig7123:3627..3749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3628..3749 -
1622816790.9338636-CDS-L-elsbetiae_contig7123:3840..40871622816790.9338636-CDS-L-elsbetiae_contig7123:3840..4087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3841..4087 -
1691683815.8699927-CDS-L-elsbetiae_contig7123:3840..40871691683815.8699927-CDS-L-elsbetiae_contig7123:3840..4087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7123 3841..4087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7123.15936.1

>prot_L-elsbetiae_contig7123.15936.1 ID=prot_L-elsbetiae_contig7123.15936.1|Name=mRNA_L-elsbetiae_contig7123.15936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
QWARDDGCPWNEDTCSAARDGGHLKVLQWARENECPWDRDTCSRAVSSGN
FEILQWARKYGCPSNAGTCWRVASNGHLETLQRNDCRWDTFTCMVAAETG
NLHVLQCAKGNRCPWDKGTSYKAKGPFEVLQCARGNGCPRNQETNRRVAS
DGNLEVLQQ*
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mRNA from alignment at L-elsbetiae_contig7123:3126..4087-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7123.15936.1 ID=mRNA_L-elsbetiae_contig7123.15936.1|Name=mRNA_L-elsbetiae_contig7123.15936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=962bp|location=Sequence derived from alignment at L-elsbetiae_contig7123:3126..4087- (Laminarionema elsbetiae ELsaHSoW15)
CAGTGGGCGAGAGACGATGGATGCCCTTGGAATGAAGATACATGCAGTGC
CGCAAGAGATGGTGGGCATCTCAAAGTCCTGCAGTGGGCGAGAGAGAATG
AATGCCCTTGGGATAGGGACACGTGCTCGAGAGCGGTGTCGAGTGGAAAC
TTCGAAATTCTGCAGTGGGCGAGAAAATACGGATGCCCTTCGAACGCGGG
TACATGCTGGAGGGTGGCGTCGAATGGACACCTCGAAACCCTGCAGCGTG
GGCGTGATATAATGGGTGCCCTGTGAACGCGGAAACGTGCAGGACTGCCG
CCGCGAATGGACAATTCGAAGTCCTGCATTGGCGAGAGGGAATGATTGTC
GTTGGGATACATTCACCTGCATGGTGGCAGCTGAAACGGGAAACCTTCAC
GTTCTGCAGTGTGCGAAAGGGAATAGATGCCCTTGGGATAAGGGAACGAG
CTACAAGGCAGTTTCGAGTGAATTTCGAAGTCCTGCAGAGGGAGAGAGGG
TAAATGGGTGCCCTCGGGATGCGGGAGCACGGTGGAGGGCTGCTTAGAAG
GGGCCCTTCGAAGTCTTGCAATGTGCGAGAGGGAATGGATGCCCTCGGAA
TCAGGAAACGAACAGGCGGGTAGCGTCCGATGGAAACCTCGAAGTCCTTC
AGCAGTGAGTGGGCGGATGGAAACGACTGCCCTATGAATGTTGAAGAACG
TGCTCAATTGCTGCTAAGAAGGGAAGGACACCTCAACGTTCTGCAGTGGG
CGAGAGAGAACGGATGCCCCTGGGACGAGGAAGTGTGCAAGGCAGCCTTC
GAATGGACATCTCCAAGTCCTCCAGTGGGCGAGATAATATGGACATGCCC
TTGGAATGAGGGAATGTGTAGGTTCGCAGCTCCAAATGGACACGTCGAAA
TTCTGGAGTGGGCGAGAAATAACGGATGTCCTTGGAACCAAGAAACGTGC
CTCGAGGCAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7123:3126..4087-

>mRNA_L-elsbetiae_contig7123.15936.1 ID=mRNA_L-elsbetiae_contig7123.15936.1|Name=mRNA_L-elsbetiae_contig7123.15936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig7123:3126..4087- (Laminarionema elsbetiae ELsaHSoW15)
CAGTGGGCGAGAGACGATGGATGCCCTTGGAATGAAGATACATGCAGTGC
CGCAAGAGATGGTGGGCATCTCAAAGTCCTGCAGTGGGCGAGAGAGAATG
AATGCCCTTGGGATAGGGACACGTGCTCGAGAGCGGTGTCGAGTGGAAAC
TTCGAAATTCTGCAGTGGGCGAGAAAATACGGATGCCCTTCGAACGCGGG
TACATGCTGGAGGGTGGCGTCGAATGGACACCTCGAAACCCTGCAGCCAG
TGGGCGAGAGACGATGGATGCCCTTGGAATGAAGATACATGCAGTGCCGC
AAGAGATGGTGGGCATCTCAAAGTCCTGCAGTGGGCGAGAGAGAATGAAT
GCCCTTGGGATAGGGACACGTGCTCGAGAGCGGTGTCGAGTGGAAACTTC
GAAATTCTGCAGTGGGCGAGAAAATACGGATGCCCTTCGAACGCGGGTAC
ATGCTGGAGGGTGGCGTCGAATGGACACCTCGAAACCCTGCAGCGGAATG
ATTGTCGTTGGGATACATTCACCTGCATGGTGGCAGCTGAAACGGGAAAC
CTTCACGTTCTGCAGTGTGCGAAAGGGAATAGATGCCCTTGGGATAAGGG
AACGAGCTACAAGGCAGGAATGATTGTCGTTGGGATACATTCACCTGCAT
GGTGGCAGCTGAAACGGGAAACCTTCACGTTCTGCAGTGTGCGAAAGGGA
ATAGATGCCCTTGGGATAAGGGAACGAGCTACAAGGCAAAGGGGCCCTTC
GAAGTCTTGCAATGTGCGAGAGGGAATGGATGCCCTCGGAATCAGGAAAC
GAACAGGCGGGTAGCGTCCGATGGAAACCTCGAAGTCCTTCAGCAGTGAA
AGGGGCCCTTCGAAGTCTTGCAATGTGCGAGAGGGAATGGATGCCCTCGG
AATCAGGAAACGAACAGGCGGGTAGCGTCCGATGGAAACCTCGAAGTCCT
TCAGCAGTGA
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