mRNA_L-elsbetiae_contig7115.15928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7115.15928.1
Unique NamemRNA_L-elsbetiae_contig7115.15928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7115.15928.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.170e-5
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   25 MEDIVHKKCGHPGCDKRPSYGMEGTKTPEL 114
            M D+V K+CGHPGC KRPSYG +G+K  EL
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAEL 30
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7115.15928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI9.170e-566.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7115contigL-elsbetiae_contig7115:1643..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D7G985
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1194
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7115.15928.1prot_L-elsbetiae_contig7115.15928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7115 1667..2371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.2223284-UTR-L-elsbetiae_contig7115:1642..16661622816790.2223284-UTR-L-elsbetiae_contig7115:1642..1666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 1643..1666 +
1691683815.376243-UTR-L-elsbetiae_contig7115:1642..16661691683815.376243-UTR-L-elsbetiae_contig7115:1642..1666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 1643..1666 +
1622816790.2474375-UTR-L-elsbetiae_contig7115:2371..23991622816790.2474375-UTR-L-elsbetiae_contig7115:2371..2399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 2372..2399 +
1691683815.3987286-UTR-L-elsbetiae_contig7115:2371..23991691683815.3987286-UTR-L-elsbetiae_contig7115:2371..2399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 2372..2399 +
1622816790.2616413-UTR-L-elsbetiae_contig7115:3595..40321622816790.2616413-UTR-L-elsbetiae_contig7115:3595..4032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 3596..4032 +
1691683815.4115865-UTR-L-elsbetiae_contig7115:3595..40321691683815.4115865-UTR-L-elsbetiae_contig7115:3595..4032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7115 3596..4032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.23522-CDS-L-elsbetiae_contig7115:1666..23711622816790.23522-CDS-L-elsbetiae_contig7115:1666..2371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7115 1667..2371 +
1691683815.3882027-CDS-L-elsbetiae_contig7115:1666..23711691683815.3882027-CDS-L-elsbetiae_contig7115:1666..2371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7115 1667..2371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7115.15928.1

>prot_L-elsbetiae_contig7115.15928.1 ID=prot_L-elsbetiae_contig7115.15928.1|Name=mRNA_L-elsbetiae_contig7115.15928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MEDIVHKKCGHPGCDKRPSYGMEGTKTPELCAQHAKAGMVSLMVKRCGHE
GCHKRPSYGVQGTKKPELCSQHAREGMADVMAKRCGHQGCHKYPSYGVQG
TKKAEFCAQHAKAGMVSTEGDPARSEMGTYGSGGRGRGRGELGGDVPVRG
SATKKRARQADAVPPVPVAVKAEEGDEAMGSCSSKRARPIGFTPRAKTEA
APERTATHATNSSSESELESEVAPEADTGVAVLT*
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mRNA from alignment at L-elsbetiae_contig7115:1643..4032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7115.15928.1 ID=mRNA_L-elsbetiae_contig7115.15928.1|Name=mRNA_L-elsbetiae_contig7115.15928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2390bp|location=Sequence derived from alignment at L-elsbetiae_contig7115:1643..4032+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGCCCAGCACGCCAGGGAGGGAATGGAGGATATTGTGCACAAGAAGTG
TGGCCACCCAGGGTGCGACAAGCGTCCGTCGTACGGCATGGAAGGTACCA
AGACGCCTGAACTCTGCGCCCAGCACGCCAAGGCGGGCATGGTGAGCCTG
ATGGTCAAGCGATGTGGACATGAAGGATGCCACAAGCGTCCATCGTACGG
CGTGCAAGGGACCAAGAAGCCTGAACTCTGCAGCCAGCACGCGAGGGAGG
GAATGGCGGACGTGATGGCCAAGCGATGTGGGCATCAAGGGTGCCACAAA
TATCCGTCTTACGGCGTGCAAGGCACCAAGAAGGCTGAATTTTGCGCTCA
GCACGCCAAGGCAGGCATGGTGTCGACGGAAGGGGATCCGGCCCGCAGTG
AGATGGGCACATATGGAAGCGGTGGGCGGGGGCGGGGGCGTGGTGAACTT
GGTGGGGATGTCCCCGTCCGCGGATCGGCGACGAAGAAGCGAGCCCGACA
GGCGGATGCGGTTCCTCCGGTGCCTGTCGCTGTCAAGGCGGAGGAAGGTG
ACGAGGCGATGGGGAGTTGCTCCAGCAAGCGAGCCCGCCCGATCGGTTTC
ACCCCACGGGCCAAAACAGAAGCAGCACCTGAGAGGACGGCCACACACGC
GACGAACTCGTCCTCGGAGTCGGAGTTGGAGTCGGAGGTGGCACCCGAGG
CAGATACAGGAGTGGCTGTGTTGACCTAGGCAGAGTGCGAAAACTAGCTG
GCTGAAGGTGCGCCGGCAAGGAGTGCTCGATGTGAACTTTTTTGGAATTG
TGCTGTTGCATTTTCAGCCTGTCGGTCGACTTGTATGTATGTATGTATCC
ATCCCACTTTGTCCATCCCACTCGTTGGTCTAGTAGTGTGGCATCGGCAA
TAATGCCACGGTAGTACAAGAATCATCACCGCTCGTGTCAATTCGACGTG
TCGTTGGAATGTAGATACATACACAGTTCAGTTTATCTTGGTTATTTGTT
TCTGCGAGGGTTTCACTCTCCAGGTATTTACCCATTATCCTCTGGTTTCG
TCGCACTTTCCCGCAAATATCGCCGAGGTCGTCGGCTGCTTTCCGTCTCG
CTCCACATGTTTTCTTCTTCTTTTAAGAATAAACAAAGAATCAAAGATGG
AACCTAACCCACACTAAAGCAAAGACTCGATATGGGGTTCAAACGGTATT
CCATACAGAGACGTAATATTTGGCCGTCTTTTGCCCTGGTCCAAGTTGCG
GCCGTACTCCTTTGTGTTTGCACTGTAAAGCATCCCACAGCGGCTAAGGT
GGGCTCTCCATGCTGCTTTTGCGCGGTTTGCTTGTTTCTTTGCCACATCT
GGCTTCAACGACTGTGCTCCGAAACCCATCTACCTTCGATTGGGCGTTGC
TCTGGGAGGGCGGTCTCAAGCTCGAGTATTAACAACGCTACTCGGAGCTG
TCGTGACGCTTGGGGGAGCCTCACCTTTTTTTTCTGCTCATATTTTCCGG
GCAGGGAGGAGGCGCGAGAGTATGCTCTGAAGTACAAAGGCATGCTGTTC
AGCCCCCCGGTACAAACACCTATAAACACCTACACGCTATGACCGCTGAA
ACTATCGGCCCGTCTACACACGCATGTATCTCATCATTTCATCGTTTGAC
GTGCCAAAATACTCTGGCTTGAACGACTCGCTGTTTGATGCGTTTTTTTA
TGACGAAACATGCCAACAGATAATAATCCCCGTTGCTTTGCTTCCGGAAA
CCGAATCGCCGAGACCAGACTTGCGTATTAAAAAAGTTCGGGTCATATGG
GGTGTGCGTGTCGGCAACTCAAGTGTGGGAGGCAAACTTCCCGACTTCTA
CCTTCCGCGTGCGAGTGTGTGAGCAATCGCCAGGCATCTCTAACCGGACT
ACTAATCCCCCCCCCGACTGATGTGTTCTCCTTCTCTTGCTGCTCTTCAC
CAGATGGCGTGGAGTGAGGAGGAACCTTGACTGTCGCGGTGTGTGTTCTA
CTCTTCTGGCGCCTCGCGCCAGCTTCCAGCCTCATTGCGATGTTGACACA
CGATGAACATTTTTGCAAGGAGGTTGCAATTTTCGATTTTCTGGTTCGCA
GGACGTCGACCATGACCGCAAAGGCCCAAACATCGGTCGTTTTTTCGTTT
TCAAACAAGCACAATACATACACATCGAGGAGTTAGGCTCGCTTCTATGA
AGTATGTACGTAGAATTTTGTTGAGCAAACCGCGTCGTTGGAGGAAAGAG
GCACCTGATAATTTGTGGAGTAGTGAGGCTGGCGGCATTTAGGTGGCCGA
ATTTTGTTCCTGGTGAAGTCAGAGGGAGAACCCACGTGCTCGCGAAAAAC
GTGCGAAGTTACTCTTAATATCTATTAGTACTTTGCCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7115:1643..4032+

>mRNA_L-elsbetiae_contig7115.15928.1 ID=mRNA_L-elsbetiae_contig7115.15928.1|Name=mRNA_L-elsbetiae_contig7115.15928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig7115:1643..4032+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGATATTGTGCACAAGAAGTGTGGCCACCCAGGGTGCGACAAGCG
TCCGTCGTACGGCATGGAAGGTACCAAGACGCCTGAACTCTGCGCCCAGC
ACGCCAAGGCGGGCATGGTGAGCCTGATGGTCAAGCGATGTGGACATGAA
GGATGCCACAAGCGTCCATCGTACGGCGTGCAAGGGACCAAGAAGCCTGA
ACTCTGCAGCCAGCACGCGAGGGAGGGAATGGCGGACGTGATGGCCAAGC
GATGTGGGCATCAAGGGTGCCACAAATATCCGTCTTACGGCGTGCAAGGC
ACCAAGAAGGCTGAATTTTGCGCTCAGCACGCCAAGGCAGGCATGGTGTC
GACGGAAGGGGATCCGGCCCGCAGTGAGATGGGCACATATGGAAGCGGTG
GGCGGGGGCGGGGGCGTGGTGAACTTGGTGGGGATGTCCCCGTCCGCGGA
TCGGCGACGAAGAAGCGAGCCCGACAGGCGGATGCGGTTCCTCCGGTGCC
TGTCGCTGTCAAGGCGGAGGAAGGTGACGAGGCGATGGGGAGTTGCTCCA
GCAAGCGAGCCCGCCCGATCGGTTTCACCCCACGGGCCAAAACAGAAGCA
GCACCTGAGAGGACGGCCACACACGCGACGAACTCGTCCTCGGAGTCGGA
GTTGGAGTCGGAGGTGGCACCCGAGGCAGATACAGGAGTGGCTGTGTTGA
CCTAGATGGAGGATATTGTGCACAAGAAGTGTGGCCACCCAGGGTGCGAC
AAGCGTCCGTCGTACGGCATGGAAGGTACCAAGACGCCTGAACTCTGCGC
CCAGCACGCCAAGGCGGGCATGGTGAGCCTGATGGTCAAGCGATGTGGAC
ATGAAGGATGCCACAAGCGTCCATCGTACGGCGTGCAAGGGACCAAGAAG
CCTGAACTCTGCAGCCAGCACGCGAGGGAGGGAATGGCGGACGTGATGGC
CAAGCGATGTGGGCATCAAGGGTGCCACAAATATCCGTCTTACGGCGTGC
AAGGCACCAAGAAGGCTGAATTTTGCGCTCAGCACGCCAAGGCAGGCATG
GTGTCGACGGAAGGGGATCCGGCCCGCAGTGAGATGGGCACATATGGAAG
CGGTGGGCGGGGGCGGGGGCGTGGTGAACTTGGTGGGGATGTCCCCGTCC
GCGGATCGGCGACGAAGAAGCGAGCCCGACAGGCGGATGCGGTTCCTCCG
GTGCCTGTCGCTGTCAAGGCGGAGGAAGGTGACGAGGCGATGGGGAGTTG
CTCCAGCAAGCGAGCCCGCCCGATCGGTTTCACCCCACGGGCCAAAACAG
AAGCAGCACCTGAGAGGACGGCCACACACGCGACGAACTCGTCCTCGGAG
TCGGAGTTGGAGTCGGAGGTGGCACCCGAGGCAGATACAGGAGTGGCTGT
GTTGACCTAG
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