mRNA_L-elsbetiae_contig711.15919.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig711.15919.1
Unique NamemRNA_L-elsbetiae_contig711.15919.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig711.15919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig711contigL-elsbetiae_contig711:2828..3901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig711.15919.1prot_L-elsbetiae_contig711.15919.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig711 2828..3687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.2563229-CDS-L-elsbetiae_contig711:2827..29971622816789.2563229-CDS-L-elsbetiae_contig711:2827..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 2828..2997 +
1691683814.664435-CDS-L-elsbetiae_contig711:2827..29971691683814.664435-CDS-L-elsbetiae_contig711:2827..2997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 2828..2997 +
1622816789.2688973-CDS-L-elsbetiae_contig711:3638..36871622816789.2688973-CDS-L-elsbetiae_contig711:3638..3687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 3639..3687 +
1691683814.6753235-CDS-L-elsbetiae_contig711:3638..36871691683814.6753235-CDS-L-elsbetiae_contig711:3638..3687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 3639..3687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.280633-UTR-L-elsbetiae_contig711:3687..39011622816789.280633-UTR-L-elsbetiae_contig711:3687..3901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 3688..3901 +
1691683814.6859825-UTR-L-elsbetiae_contig711:3687..39011691683814.6859825-UTR-L-elsbetiae_contig711:3687..3901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 3688..3901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig711.15919.1

>prot_L-elsbetiae_contig711.15919.1 ID=prot_L-elsbetiae_contig711.15919.1|Name=mRNA_L-elsbetiae_contig711.15919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
LTSEEGGGRGGARGVGGKGRERLPSAAAGWRLRDRCDRRVGRRGEQGRAA
DGLFLYGSNRAYAGAHGLAPGV*
back to top

mRNA from alignment at L-elsbetiae_contig711:2828..3901+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig711.15919.1 ID=mRNA_L-elsbetiae_contig711.15919.1|Name=mRNA_L-elsbetiae_contig711.15919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig711:2828..3901+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACATCAGAAGAAGGAGGAGGTAGAGGAGGTGCTCGAGGGGTAGGGGG
CAAAGGACGTGAACGACTCCCTTCAGCAGCAGCCGGGTGGCGGTTACGGG
ATCGCTGTGATCGGCGCGTCGGCAGAAGGGGGGAACAAGGAAGGGCGGCA
GACGGCTTGTTCCTTTACGGGTAAGATTGCCAGTGTGCCCATGATGTCGA
ACGGATTTTGACAAGATAGCCTCGTATATAATCCTTCGTCACATGGGTCG
AGCATGTGTTGCCTCGGGTGTATCCAAGAAGCCCCGGTTGCGCTAGCAGC
CCAAGAGCTTCTGATGGGGTAAGCAGAGAGCTACGAGGTGTTTGATCGCT
GTATCTTTAGCCTTATTCCAGCCTTCTCAACGTCGGCCGCAGCGCCCACC
TTACCATCACACCTTGACAAGATTCTATATAGCCGCTCGTTGGCTACCCT
AGGGTTCAGCATCATTTACTGTGTGTCTGCTGTGTTAGTCGGTGTACACG
ATGTATGTGTACATTTCCCGGGTGCAGATCGGCTGAAGGGAGGGGGTCGT
GAGATGGGACCGACTTTCAGTGTCACCAAGCTTCAAGTGTGGAGCTTGAG
CTGTGGCTCGATTGGGGAGCAGAACCAGGTCGTGCGTGGACAATATGAAC
AGCAGTGCTGGTGCCCACACGACATCACGCACATTTCAGACTCGAGAGAT
TTTGAACGTAAGCGTAAGTGTACACAAACCGTGTCGCACTACTATCGCAT
GTACTGCACGCATCAATTACCCAAGAAGGTCTCCATGTCGGTGTATGTTC
TGCTCCCACAGGAGCAACCGCGCTTACGCGGGGGCGCACGGACTTGCTCC
GGGCGTTTGACGAAGCCAAAGAAAACGAAAAGGAGTTGCTGTCGCTTGTC
CAGGAGGCAAACAGAGCCGTGGCGGAAGCTTTAGGGTCCTGGGAGAGGGC
CAATGGGACTCCGGGAGAGATGCGACTTGCGGCGGAAAGGGATGCGGCAT
TTGCAAAAATGGTACCCCTTCAACGCCTCCACACAGAAGCGAAAGGGCTA
GCGATCACGATCGACCGCCTCCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig711:2828..3901+

>mRNA_L-elsbetiae_contig711.15919.1 ID=mRNA_L-elsbetiae_contig711.15919.1|Name=mRNA_L-elsbetiae_contig711.15919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig711:2828..3901+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACATCAGAAGAAGGAGGAGGTAGAGGAGGTGCTCGAGGGGTAGGGGG
CAAAGGACGTGAACGACTCCCTTCAGCAGCAGCCGGGTGGCGGTTACGGG
ATCGCTGTGATCGGCGCGTCGGCAGAAGGGGGGAACAAGGAAGGGCGGCA
GACGGCTTGTTCCTTTACGGCTCACATCAGAAGAAGGAGGAGGTAGAGGA
GGTGCTCGAGGGGTAGGGGGCAAAGGACGTGAACGACTCCCTTCAGCAGC
AGCCGGGTGGCGGTTACGGGATCGCTGTGATCGGCGCGTCGGCAGAAGGG
GGGAACAAGGAAGGGCGGCAGACGGCTTGTTCCTTTACGGGAGCAACCGC
GCTTACGCGGGGGCGCACGGACTTGCTCCGGGCGTTTGAGAGCAACCGCG
CTTACGCGGGGGCGCACGGACTTGCTCCGGGCGTTTGA
back to top