mRNA_L-elsbetiae_contig7100.15911.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7100.15911.1 vs. uniprot
Match: D8LTK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK0_ECTSI) HSP 1 Score: 429 bits (1103), Expect = 3.890e-145 Identity = 249/371 (67.12%), Postives = 268/371 (72.24%), Query Frame = 3 Query: 480 MIGPSKFRMKPQRSVRGARGAKNIETGKFKKPGVLEGLSVSPWVVEEELERAQRVRSHKAAISKDPVVFRRKREEGGLLDYAEETHAVKRFLDKIHPIRDESCPPKSGFSYRRVSHDTEPPDFYDTRLDSVRPRTVGYSPGHMRALSPTPCLTWGGRESAKASMEWGEGTGGSLGAVEACLGGTSRGGGSTIGPSHSCRHPSQKSRLGQSLGTEWFGSNHRVATGDERSPQNN---QEPEADASSIQIRPMWSRQGLRTTPPG--SSSFHGHALRPFSSSCDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALVDKREARLAREAEEVVASQLEKARRKHAAEEREGIEKFEGSLKEILAQKWKYL 1577 M+ PSK R KP+RSVRG RG NIE G FKKPGVL GL+VSPWVVEEE+ERAQRV SHKA IS +PVVFRRKREEGGLLDYAEE HAVKRFLDKIHPIRDESCPPKSGFSY ES++ SMEWGEGTGGSLG V+ACL GTSR GGS PS SC PSQ+SR GQS TE F DE SP+NN QE + D S I++RPMWSRQGLR T PG SSSF G ALRPFSSSCDQLGRPMSR VLSRSTAGLKPQQFDTTQRRSEYTCAL+ +REAR +REA VVA+QLEK RRK+A EEREGI+KFEGSLKEILAQKWKYL Sbjct: 1 MMEPSKVRTKPRRSVRGPRGVPNIEPGTFKKPGVLGGLNVSPWVVEEEVERAQRVLSHKATISTNPVVFRRKREEGGLLDYAEEMHAVKRFLDKIHPIRDESCPPKSGFSYS---------------------------------------------ESSRVSMEWGEGTGGSLGTVKACLRGTSRCGGSATRPSRSCPLPSQRSRFGQSWETEDFT--------DEGSPRNNNQGQEADRDGSGIEVRPMWSRQGLRATRPGTTSSSFQGPALRPFSSSCDQLGRPMSREVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARQSREAGRVVAAQLEKERRKNATEEREGIDKFEGSLKEILAQKWKYL 318
BLAST of mRNA_L-elsbetiae_contig7100.15911.1 vs. uniprot
Match: A0A6H5KWZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ1_9PHAE) HSP 1 Score: 188 bits (477), Expect = 3.560e-54 Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 3 Query: 1221 MWSRQGLRTTPPG--SSSFHGHALRPFSSSCDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALVDKREARLAREAEEVVASQLEKARRKHAAEEREGIEKFEGSLKEILAQKWKYL 1577 MWSRQGLR T PG SSSF G ALRPFSSS DQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCAL+ +REAR +REA +VA QLEK RRK+A EEREGIEKFEGSLKEILAQKWKYL Sbjct: 1 MWSRQGLRATRPGTTSSSFQGPALRPFSSSRDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARRSREAGRIVAEQLEKERRKNATEEREGIEKFEGSLKEILAQKWKYL 121 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7100.15911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7100.15911.1 >prot_L-elsbetiae_contig7100.15911.1 ID=prot_L-elsbetiae_contig7100.15911.1|Name=mRNA_L-elsbetiae_contig7100.15911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp MAPLQTSSGSGVSNSSRSCSTGSRIHLQHVSAAHNAEPTPLDQSILASAIback to top mRNA from alignment at L-elsbetiae_contig7100:4167..9742- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7100.15911.1 ID=mRNA_L-elsbetiae_contig7100.15911.1|Name=mRNA_L-elsbetiae_contig7100.15911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5576bp|location=Sequence derived from alignment at L-elsbetiae_contig7100:4167..9742- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7100:4167..9742- >mRNA_L-elsbetiae_contig7100.15911.1 ID=mRNA_L-elsbetiae_contig7100.15911.1|Name=mRNA_L-elsbetiae_contig7100.15911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig7100:4167..9742- (Laminarionema elsbetiae ELsaHSoW15)back to top |