mRNA_L-elsbetiae_contig71.15906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig71.15906.1
Unique NamemRNA_L-elsbetiae_contig71.15906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig71.15906.1 vs. uniprot
Match: A0A6H5JXH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.430e-60
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = 2 
Query:  197 DPFRPEKASFSPMTINAVVSVLFKHETEAVEAAAAVLEQRRTSGDWRLTKEEESAVTNRVYGVANSLTELRFMLATAVRRTPSIAKYGMLSDYGMSDDVEDNPLAQMNQAECLLALYMLHKEKLGVAAVDFLDADRLDVLKG 622
            DPFRP +AS SP+ INA+VSVLF+ +TEA  AAAA LE+R    DW  T+EEE AVT+RV GVA+ LTELRFMLATAV RTPSIAKYGM SDYGMS +VE++PLAQMNQAECLLALY+LHKE  GVAAVDFLDA+RLDVL+G
Sbjct:  109 DPFRPTRASMSPLVINALVSVLFRPDTEATGAAAAALERR---SDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSKNVENDPLAQMNQAECLLALYILHKENAGVAAVDFLDAERLDVLQG 247
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BLAST of mRNA_L-elsbetiae_contig71.15906.1 vs. uniprot
Match: D7FRB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.450e-55
Identity = 99/132 (75.00%), Postives = 112/132 (84.85%), Query Frame = 2 
Query:  227 SPMTINAVVSVLFKHETEAVEAAAAVLEQRRTSGDWRLTKEEESAVTNRVYGVANSLTELRFMLATAVRRTPSIAKYGMLSDYGMSDDVEDNPLAQMNQAECLLALYMLHKEKLGVAAVDFLDADRLDVLKG 622
            SP+ INA+VSVLFK +TEA  AAAA LE+R    DW  T+EEE AVT+RV GVA+ LTELRFMLATAV RTPSIAKYGM SDYGMS++VE++PLAQMNQAECLLALY+LHKE  G AAVDFLDA+RLDVL G
Sbjct:    2 SPLVINALVSVLFKPDTEATGAAAAALERR---SDWEFTEEEERAVTSRVCGVASHLTELRFMLATAVERTPSIAKYGMFSDYGMSENVENDPLAQMNQAECLLALYILHKENAGGAAVDFLDAERLDVLAG 130
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BLAST of mRNA_L-elsbetiae_contig71.15906.1 vs. uniprot
Match: A0A835ZBX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.780e-37
Identity = 82/145 (56.55%), Postives = 101/145 (69.66%), Query Frame = 2 
Query:  188 APEDPFRPEKASFSPMTINAVVSVLFKHETEAVEAAAAVLEQRRTSGDWRLTKEEESAVTNRVYGVANSLTELRFMLATAVRRTPSIAKYGMLSDYGMSDDVEDNPLAQMNQAECLLALYMLHKEKLGVAAVDFLDADRLDVLKG 622
            A  DPFRP KAS  P+ INA+  VLFK E    +AA + L Q R   D  LT EE++ V +RV+GV +S  ELRF LA+AV R   IAKYGM  DYG+S+D+E NPLAQ+N AECLLALYMLH+E  G     F+DA++LDVL+G
Sbjct:   39 AASDPFRPAKASIDPLVINALQRVLFKDEP--ADAAVSALLQSR---DDALTPEEDALVRSRVHGVVHSAQELRFTLASAVSRHAFIAKYGMQGDYGVSEDLESNPLAQLNHAECLLALYMLHREGRGEEPA-FVDAEKLDVLRG 177
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BLAST of mRNA_L-elsbetiae_contig71.15906.1 vs. uniprot
Match: K0T9B3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9B3_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 9.750e-7
Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 2 
Query:  293 AAAVLEQRRTSGDWR-------LTKEEESAVTNRVYGVANSLTELRFMLATAVRRTPSIAKYGMLSDYGM---------------SDDVEDNPLAQMNQAECLLALYMLHKEKLGV----------AAVDFLDADRLDVL 616
            A   ++QR  S D         L   E+  V+ RV GV   L EL  +L   V+    ++KYG    +G+               ++ ++ NPL +MN+AECLLAL++   EK  +          + VDF+DADRL+VL
Sbjct:  141 AVNAIDQRNKSADADGDGENAVLDTSEQQTVSGRVVGVVMRLPELESLLVDKVKGVGWVSKYGEEESFGLLRSEVKDSEGDSGQLAEQLQLNPLLRMNRAECLLALFIDTVEKPQLERIGQRVPDSSRVDFIDADRLEVL 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig71.15906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXH9_9PHAE6.430e-6074.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRB2_ECTSI2.450e-5575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZBX3_9STRA2.780e-3756.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0T9B3_THAOC9.750e-732.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig71contigL-elsbetiae_contig71:40464..43459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue7.1e-44
Seed eggNOG ortholog2880.D7FRB2
Hectar predicted targeting categoryother localisation
EggNOG OGs2EWVJ@1,2SYMA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1220
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig71.15906.1prot_L-elsbetiae_contig71.15906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig71 40696..42864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.9766436-UTR-L-elsbetiae_contig71:40463..406951622816787.9766436-UTR-L-elsbetiae_contig71:40463..40695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 40464..40695 +
1691683813.7122846-UTR-L-elsbetiae_contig71:40463..406951691683813.7122846-UTR-L-elsbetiae_contig71:40463..40695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 40464..40695 +
1622816788.0253403-UTR-L-elsbetiae_contig71:42864..434591622816788.0253403-UTR-L-elsbetiae_contig71:42864..43459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 42865..43459 +
1691683813.7553933-UTR-L-elsbetiae_contig71:42864..434591691683813.7553933-UTR-L-elsbetiae_contig71:42864..43459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 42865..43459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.990479-CDS-L-elsbetiae_contig71:40695..407341622816787.990479-CDS-L-elsbetiae_contig71:40695..40734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 40696..40734 +
1691683813.725419-CDS-L-elsbetiae_contig71:40695..407341691683813.725419-CDS-L-elsbetiae_contig71:40695..40734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 40696..40734 +
1622816788.0019124-CDS-L-elsbetiae_contig71:42216..423801622816788.0019124-CDS-L-elsbetiae_contig71:42216..42380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 42217..42380 +
1691683813.7348464-CDS-L-elsbetiae_contig71:42216..423801691683813.7348464-CDS-L-elsbetiae_contig71:42216..42380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 42217..42380 +
1622816788.0127153-CDS-L-elsbetiae_contig71:42674..428641622816788.0127153-CDS-L-elsbetiae_contig71:42674..42864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 42675..42864 +
1691683813.745686-CDS-L-elsbetiae_contig71:42674..428641691683813.745686-CDS-L-elsbetiae_contig71:42674..42864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 42675..42864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig71.15906.1

>prot_L-elsbetiae_contig71.15906.1 ID=prot_L-elsbetiae_contig71.15906.1|Name=mRNA_L-elsbetiae_contig71.15906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MTINAVVSVLFKHETEAVEAAAAVLEQRRTSGDWRLTKEEESAVTNRVYG
VANSLTELRFMLATAVRRTPSIAKYGMLSDYGMSDDVEDNPLAQMNQAEC
LLALYMLHKEKLGVAAVDFLDADRLDVLKG*
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mRNA from alignment at L-elsbetiae_contig71:40464..43459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig71.15906.1 ID=mRNA_L-elsbetiae_contig71.15906.1|Name=mRNA_L-elsbetiae_contig71.15906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2996bp|location=Sequence derived from alignment at L-elsbetiae_contig71:40464..43459+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCCGAGCCCAGCGACCTAGTCTGCGGTCGTGCGCACCACTAGCAGTAG
GAGCGGCAAGGCCACCGCCAGCAGCACCTTGTGGACGGACCATAAGATCA
ATAAGACGGCGACCACTATTGCTTTCTTCATCGGCCGGGAATGCAGGAGA
AGGAAGCGTTGCAGTCAGCGGTGGTGCGGCTGGGGCCGCCCCCGAGGATC
CGTTTCGTCCTGAAAAGGCGTCGTTTTCTCCCATGACGATCAACGCCGTG
GTGTCGGTGCTATTCAAACATGTGAGGCGATATACGCCACGCCATCCAAT
ATTTGTGCGTGGGTTCTGTTCATATATTGTATACGGGGGAAGATGCGCGA
CTTCTTTGTCGGAGTGTTCCTGTGCTCATACAATCCGAAGTTGCTCATGT
AGATAGATGGACTACCACCACCGTAGTCTAGTCCAGATGTAGGCGTTCCC
GTCGCACGCGCTTAGCCCGGACGTACGGCTGAAACTTCAAGGGTGGAACA
TAGATATTTTCTCACTAGAGGCCCCTTGACATGATTACCAATCTACGTGC
CTCTGCTCAGTTGTGCCCCCCATTCTGCATATCTTTCGCTCACGCCCCCC
GGCGAATGTCTGATACCCCCAACGGATATTGTGAGTACCTAAACACGTGT
CGCTACTCCATGCTGGGCGCACTACTGCATTTGATTCTCGTTACTTTCCA
CAAATCCCCTATTTCTGTGACGCCGATGGCTTATACCTAAATAGTTCGCA
TTTGTTGATCGTTTTCCGAATGGCATGTAATGTACTTCTTGTACTTCGTT
TACATCTCCTAGTCTTATGTCGATGGTAAGCAGTAAAGCTACTTCGTAAC
ACAGCTGAACTTTGTGGAGAATAGCTTAGGATCAATTGCTGTTCGGTTAC
TATCTAATGGTTAAGGCTGTGCACCACGCAGCACAGCTTTGAAATCCCGG
GTAGAGATTCCAGGAGAGAGCCCGAAGCGACACTTGTTCTTTTTATAGCG
GTTCTTTTCTGCCATCTCCCACAGAAAATGCCGTAGATTCTCTCCAGCTG
CCCTATCTCACGACGAAATCGATTTTTGCGCTTTGACATGAGAACTGATA
CCAAGCCTCCTCAGTCAACCCTTGGAGTTGACTATCTTGAGGTAGCTCTT
ACTACTACTGTTGGTATCAAAGCGGAGAGCAATAGCATGTACCACGGTCG
ACCGTTTGAATCCTAGTCTGCACCGAGCAAATTACATGTTGTGTGTCCGC
AAAGGCGGGGGCATGCACGCTTGGGGTAGACAATAGCGAGGGTCGGCCAT
GGAGCGCACGAGGTCTTTGGAGACATGGTCTTCGACTGAGCAACCCTTAT
AAGAACCTTGGAGGAACATAGTCGGAGCACAGCAGGAGCGGTGCACAATA
GCTTTCGATCTGGGGAACTTCGTGTTTTCAAACCGTCTCAAAACGCCCCC
TTTTTCTGTCAACCTGGTGGGGTTTTGCTGAACGAATAAAGGCACACACG
CCTTGCGAACCAGCTCAAGCAGCAGACACGCGAAGATAGCCAGGATGTTA
CCCTTCAAGAAAATGGGGCTGAAGACAGTAGTCAAACGAATCCCGACACC
CATAGAATTTGCGGTGCCAGACACGTGTTCTTATTGTACTGATTTCAAAG
AGAAGGCATCAGAACCAGCAGTCTATTCCCCGCAACTTCAACTACGTGGT
GCACCCTTAAGCTTGTCCCTCCTTCACTGTTTGTCTCGTGGTTTTGACCC
CAGGAAACGGAAGCGGTCGAGGCGGCCGCGGCGGTATTGGAGCAGCGCCG
AACCAGCGGAGACTGGCGGCTCACGAAGGAGGAGGAGAGCGCCGTCACCA
ATAGGGTGTACGGCGTGGCCAACAGTTTGACAGAACTGCGATTTATGCTC
GCCACGGCAGTTAGACGGTGAGGATCTCTATCCGGGGGAGGATGCAGGTG
GTGTAGTATTGTATCTAGACTACTTCGAAGTAGATAGAATGTGTGTGAGA
ACCACAATAAGGCAAGGTCCGCCCACCCTGGGTTCCCAAAAGTAACCAGC
GTACCTGTAGAAATCCCTTCGTCTGCCACTCGCTTGGGTGAGTTCGTCCT
TTACATTACTTTTTTTTCTCGGGCTGTATTTATGTGGGTTATGTTAGACG
TTAATACCTGCCGAATCGTCGACGCACCAAACATGTCAATTGCTGTGTAA
ACCTCGCTCAGAACGCCGTCGATCGCCAAGTACGGGATGCTTTCGGACTA
CGGCATGAGTGATGACGTCGAGGACAACCCTTTGGCGCAGATGAATCAAG
CCGAATGCCTCCTGGCGCTTTACATGCTCCACAAGGAGAAGCTTGGAGTC
GCGGCAGTGGATTTTTTGGATGCCGATAGACTTGACGTTTTGAAGGGGTA
AATCTAGGGGTAGTTATTTTTTCAACTGAGGAAAACGAGTTTGAGGTGGT
GAGGTTACCTATGTTTATTTTGTTGCAATGGGGCGAGGAAGTGCCAAGCG
TGATCCTTGTGTGAGGTTGTGAGTGTGCTTACCAGCTGGTGGATGTTTAT
TTTGTTGCAATGGGGCGAGGAAGCGCCGAGCGTGCTCAGCTGAAAACATC
TGGTGGGAGTTTCTGTACTTCGTATGTATACTTGCCCTCACCGTTTATGA
ATGTTCACGTCCCCTACATATCTCATGAGGCTAAAAGCGGAGTATTCGTG
TGTGGGGTAGATTGGTTGGATATACCGACTGCGTACGGTTCATGTTTTGA
AGTAGGTACGCCTGGAGGGATGTGTGGAGAGTCTCTGGATACGAGTTGCG
GAAACCCCGATTTTCGGGCCGCACTCTTCTCTCCACCTCTTATTGCGAGC
TAGTCGAGATGTGAACACTCTCTGGTCTACAAAGCACGCAAAATGTCACG
TACGAATGATATACTTCTATCTGCCAGAGAACCGTAAAGCCCTTCGAGCG
CCCAGAAGGACGAAGAGCGTCCTTTCACCAGCCCCGTCGCGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig71:40464..43459+

>mRNA_L-elsbetiae_contig71.15906.1 ID=mRNA_L-elsbetiae_contig71.15906.1|Name=mRNA_L-elsbetiae_contig71.15906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig71:40464..43459+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATCAACGCCGTGGTGTCGGTGCTATTCAAACATATGACGATCAA
CGCCGTGGTGTCGGTGCTATTCAAACATGAAACGGAAGCGGTCGAGGCGG
CCGCGGCGGTATTGGAGCAGCGCCGAACCAGCGGAGACTGGCGGCTCACG
AAGGAGGAGGAGAGCGCCGTCACCAATAGGGTGTACGGCGTGGCCAACAG
TTTGACAGAACTGCGATTTATGCTCGCCACGGCAGTTAGACGGAAACGGA
AGCGGTCGAGGCGGCCGCGGCGGTATTGGAGCAGCGCCGAACCAGCGGAG
ACTGGCGGCTCACGAAGGAGGAGGAGAGCGCCGTCACCAATAGGGTGTAC
GGCGTGGCCAACAGTTTGACAGAACTGCGATTTATGCTCGCCACGGCAGT
TAGACGAACGCCGTCGATCGCCAAGTACGGGATGCTTTCGGACTACGGCA
TGAGTGATGACGTCGAGGACAACCCTTTGGCGCAGATGAATCAAGCCGAA
TGCCTCCTGGCGCTTTACATGCTCCACAAGGAGAAGCTTGGAGTCGCGGC
AGTGGATTTTTTGGATGCCGATAGACTTGACGTTTTGAAGGGGTAAAACG
CCGTCGATCGCCAAGTACGGGATGCTTTCGGACTACGGCATGAGTGATGA
CGTCGAGGACAACCCTTTGGCGCAGATGAATCAAGCCGAATGCCTCCTGG
CGCTTTACATGCTCCACAAGGAGAAGCTTGGAGTCGCGGCAGTGGATTTT
TTGGATGCCGATAGACTTGACGTTTTGAAGGGGTAA
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