prot_L-elsbetiae_contig71.15904.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig71.15904.1
Unique Nameprot_L-elsbetiae_contig71.15904.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length209
Homology
BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: D7FRB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB4_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.530e-70
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 0
Query:    1 MVYGCDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCVYYAIVEEAITTVAHLVAFGVGMVALLQFEALHLLPGHPS 175
            M YGCDLTRVFTYEGSE D  INY TL +TL+T++LCTR+AGERASRY   A WFW+P T +L AMQ+FADCSTNNVGISAVWSAYAGF+FL W+R       +  R  + +  +L   TP     SL +W GVCVYYAIVEEA+TTVAHLVAFGVG  ALL FEALH +    S
Sbjct:    1 MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRKAGERASRYPRYAAWFWVPFTSVLFAMQLFADCSTNNVGISAVWSAYAGFVFLAWWR------IQHIRAENAAVSALAYATP----VSLAMWTGVCVYYAIVEEAMTTVAHLVAFGVGAGALLLFEALHKISSQDS 165          
BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: A0A835ZC08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC08_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.120e-26
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 0
Query:    5 CDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPH--AVTASLTVWVGVCVYYAIVEEAITTVAHLVAFGVG 157
            C ++   TY GS+ D  +NY  L +    + +  R A +   RY   A   W+PLT  L  +Q+ ADC  +  GISAVW+A AGF+ +GW                +  P++  P P   A  A+L+  +G+ VYYA+VE+AIT+VAH VAFGVG
Sbjct:    3 CKISSALTYSGSQLDVGLNYFGLVVCTTAVAVVLRPASKHCRRYRNYAQSSWIPLTAGLFVLQIGADCGADAEGISAVWAAQAGFLAVGW----------------RLMPAMYRPRPARLATAAALSTALGLTVYYAMVEDAITSVAHAVAFGVG 141          
BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: A0A836CLZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.920e-13
Identity = 57/180 (31.67%), Postives = 81/180 (45.00%), Query Frame = 0
Query:    5 CDLTRVFTYE-GSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNN-------VGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCV-------YYAIVEEAITTVAHLVAFGVGMVALLQFEALHL 169
            CD+     Y  GS  D   NY  L +T   + L  R AG+ A+R    A   W+P+T +L A+QVFADC+ +         GISA+W+A+AG++                     ++  +L P      A+                YYA+ E  +TTVAH+VA GVG  ALL     H+
Sbjct:    3 CDVPAALVYSRGSRVDIYFNYGALVLTTAALQLSLRGAGDVAARAPRCARAAWLPVTALLLALQVFADCAADEQASRRAMCGISAIWAAHAGWL--------------------ATALVILHPLFDGAPAARAXXXXXXXXXXXXXXYYAVAEPPLTTVAHIVAAGVG--ALLAVAHKHI 160          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRB4_ECTSI1.530e-7064.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC08_9STRA3.120e-2638.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CLZ2_9STRA3.920e-1331.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 165..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..164
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 140..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 116..139
NoneNo IPR availableTMHMMTMhelixcoord: 77..99
NoneNo IPR availableTMHMMTMhelixcoord: 21..38
NoneNo IPR availableTMHMMTMhelixcoord: 119..141
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 148..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig71contigL-elsbetiae_contig71:26784..30425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig71.15904.1mRNA_L-elsbetiae_contig71.15904.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig71 26740..31447 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig71.15904.1 ID=prot_L-elsbetiae_contig71.15904.1|Name=mRNA_L-elsbetiae_contig71.15904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MVYGCDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAG
LAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFG
SSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCVYYAIVEEAITTVAH
LVAFGVGMVALLQFEALHLLPGHPSCCIGRHAYFMKRSGGGASEAETAAD
STPYDELR*
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