mRNA_L-elsbetiae_contig71.15904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig71.15904.1
Unique NamemRNA_L-elsbetiae_contig71.15904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: D7FRB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB4_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.080e-66
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 3 
Query:   45 MVYGCDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCVYYAIVEEAITTVAHLVAFGVGMVALLQFEALHLLPGHPS 569
            M YGCDLTRVFTYEGSE D  INY TL +TL+T++LCTR+AGERASRY   A WFW+P T +L AMQ+FADCSTNNVGISAVWSAYAGF+FL W+R       +  R  + +  +L   TP     SL +W GVCVYYAIVEEA+TTVAHLVAFGVG  ALL FEALH +    S
Sbjct:    1 MAYGCDLTRVFTYEGSETDIYINYVTLVLTLITLILCTRKAGERASRYPRYAAWFWVPFTSVLFAMQLFADCSTNNVGISAVWSAYAGFVFLAWWR------IQHIRAENAAVSALAYATP----VSLAMWTGVCVYYAIVEEAMTTVAHLVAFGVGAGALLLFEALHKISSQDS 165
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BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: A0A835ZC08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC08_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.250e-24
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 3 
Query:   57 CDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPH--AVTASLTVWVGVCVYYAIVEEAITTVAHLVAFGVG 515
            C ++   TY GS+ D  +NY  L +    + +  R A +   RY   A   W+PLT  L  +Q+ ADC  +  GISAVW+A AGF+ +GW                +  P++  P P   A  A+L+  +G+ VYYA+VE+AIT+VAH VAFGVG
Sbjct:    3 CKISSALTYSGSQLDVGLNYFGLVVCTTAVAVVLRPASKHCRRYRNYAQSSWIPLTAGLFVLQIGADCGADAEGISAVWAAQAGFLAVGW----------------RLMPAMYRPRPARLATAAALSTALGLTVYYAMVEDAITSVAHAVAFGVG 141
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BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Match: A0A836CLZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.240e-12
Identity = 57/180 (31.67%), Postives = 81/180 (45.00%), Query Frame = 3 
Query:   57 CDLTRVFTYE-GSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAGLAGWFWMPLTLILCAMQVFADCSTNN-------VGISAVWSAYAGFIFLGWYRGDFGSSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCV-------YYAIVEEAITTVAHLVAFGVGMVALLQFEALHL 551
            CD+     Y  GS  D   NY  L +T   + L  R AG+ A+R    A   W+P+T +L A+QVFADC+ +         GISA+W+A+AG++                     ++  +L P      A+                YYA+ E  +TTVAH+VA GVG  ALL     H+
Sbjct:    3 CDVPAALVYSRGSRVDIYFNYGALVLTTAALQLSLRGAGDVAARAPRCARAAWLPVTALLLALQVFADCAADEQASRRAMCGISAIWAAHAGWL--------------------ATALVILHPLFDGAPAARAXXXXXXXXXXXXXXYYAVAEPPLTTVAHIVAAGVG--ALLAVAHKHI 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig71.15904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRB4_ECTSI3.080e-6664.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC08_9STRA4.250e-2438.71Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CLZ2_9STRA5.240e-1231.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig71contigL-elsbetiae_contig71:26740..31447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002520.1
Exons3
Model size1693
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig71.15904.1prot_L-elsbetiae_contig71.15904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig71 26784..30425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.774796-UTR-L-elsbetiae_contig71:26739..267831622816787.774796-UTR-L-elsbetiae_contig71:26739..26783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 26740..26783 +
1691683813.5672934-UTR-L-elsbetiae_contig71:26739..267831691683813.5672934-UTR-L-elsbetiae_contig71:26739..26783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 26740..26783 +
1622816787.821068-UTR-L-elsbetiae_contig71:30425..314471622816787.821068-UTR-L-elsbetiae_contig71:30425..31447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 30426..31447 +
1691683813.6120753-UTR-L-elsbetiae_contig71:30425..314471691683813.6120753-UTR-L-elsbetiae_contig71:30425..31447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 30426..31447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.785303-CDS-L-elsbetiae_contig71:26783..268531622816787.785303-CDS-L-elsbetiae_contig71:26783..26853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 26784..26853 +
1691683813.5810158-CDS-L-elsbetiae_contig71:26783..268531691683813.5810158-CDS-L-elsbetiae_contig71:26783..26853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 26784..26853 +
1622816787.7957335-CDS-L-elsbetiae_contig71:29774..299051622816787.7957335-CDS-L-elsbetiae_contig71:29774..29905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 29775..29905 +
1691683813.5914564-CDS-L-elsbetiae_contig71:29774..299051691683813.5914564-CDS-L-elsbetiae_contig71:29774..29905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 29775..29905 +
1622816787.8084626-CDS-L-elsbetiae_contig71:29999..304251622816787.8084626-CDS-L-elsbetiae_contig71:29999..30425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 30000..30425 +
1691683813.6024563-CDS-L-elsbetiae_contig71:29999..304251691683813.6024563-CDS-L-elsbetiae_contig71:29999..30425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 30000..30425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig71.15904.1

>prot_L-elsbetiae_contig71.15904.1 ID=prot_L-elsbetiae_contig71.15904.1|Name=mRNA_L-elsbetiae_contig71.15904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
MVYGCDLTRVFTYEGSEKDSLINYTTLAITLVTIVLCTRRAGERASRYAG
LAGWFWMPLTLILCAMQVFADCSTNNVGISAVWSAYAGFIFLGWYRGDFG
SSNEGDRGTHKSSPSLLLPTPHAVTASLTVWVGVCVYYAIVEEAITTVAH
LVAFGVGMVALLQFEALHLLPGHPSCCIGRHAYFMKRSGGGASEAETAAD
STPYDELR*
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mRNA from alignment at L-elsbetiae_contig71:26740..31447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig71.15904.1 ID=mRNA_L-elsbetiae_contig71.15904.1|Name=mRNA_L-elsbetiae_contig71.15904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4708bp|location=Sequence derived from alignment at L-elsbetiae_contig71:26740..31447+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCCCACCTGGGCCGCCACGCGGAGTACAGCTGACTTGGATTATGGTG
TATGGGTGCGACTTGACGCGAGTGTTCACTTACGAGGGAAGCGAGAAGGA
CAGCTTGATCAATTGTAAGAGAGGCAGGAGCGAAATATAAAACCATTTCC
CCGCAAGCTTCCACACCCTGTATCTACAGCTATCGCTGATCGCTATCGTT
ATTAGCTGTGTATAGCTGTCCAGGGCATGTAGCTGTCTGTAGATAGCTAG
CTGCGCAGGACATTGAAACAATAGCTGTCTGCAGACAGCTAGCTGCGCAG
GGTTTTGAAACAATAGGTGTCTACAGACAGCTACATATAACAATACATAC
AAATATAGCTGCGCAGGATTTTGGAAACAAATAGACTACCTAGAGTAGCT
GCGCAGCCTTTTTTTTTATTTTTTCTTACGGATACCCACACGTTTACCAG
CCTTTTGAAACAAAGCTGTCTGTAGACAGCTATTTAGCTGCGTAGCTTTT
CGAAACAAAAGCTGTCTGCAGGCAGCTAGCTGCGCAGCTCCTTGGAACAA
TAGCTGTCTACGAGAACAGCTAAGCTTAGCTGTCTGTAGAGCTATGGCTA
CAATATAGGTGTTCAGTGTTGTGATTTTTTTTATTTCTGGGTGGCGTCAA
CTTTTGTCGTGGAAATTCCTTTCAAATCGTGATATATAGCCGTAACTCTG
GTTTGGTGCAACCCCAGTCAATCATATCCGCGCCTCGTTTTGTTTGTCGA
AGACTAAGATATGTGCGATTCCTAGTTGCCTTGGCCTCCCCCCCCTGATC
AATCTGTCTCCCGCATGTGTGCATTCGATCCTGGATTGTTTTCCCATTAG
ATAGTAGTGAGCTTCGTCTTAGAACAAAAATCACGGAGAACAGTGCACCA
GGGGCGCCAACGATTTCAAAATGCCGGAGATAGCACACACTAACCGCACA
GCATGTCCACCGATCAGGAAGCGTTGCGCGAGAAGAAACGTGTTGGTTCA
TGCACCCTCCTTGCGCAGCTTCTCGAAACTAAATAGCTGTGTAGGTAGCT
ATAGCTGACGATAGCTGTCTGCGGACAGCTAGCTGCGCAGGATTTTGAAA
CAAAAGCTGTCTGCAGAGAGCTAGCTGCGCAGGATTTCGAAACAACAGCT
GTCCGCAGACAGCTATCGTAGCTGCGCAGGATTTCGAAACAAAAGCTGTC
TGCAGACAGCTAGCTGCGCAGGGTTCCGAAACAGTAGCTGTCTGCAGACA
GCTAGCTGCGTAGCTTTCTGAAACAATAGCTGCGCAGGATTTAGAAACAA
TAGCTGTCTGCCAGACAGCTGACCGCTATCGTAGCTGTACAGGGTGTGCA
AGCTTCGCACTACAACCCTGCTGATTTTCTGATGTGTAAATAGGCGCATC
GCAATGCAAGCACGTTTTGAAAGATGAAACAGTTAATCAAAAATGGAACC
TAACCCACATTGAGATGGGACTCCGTGAGATTCAGACGGTATTCCATAAA
GTGACGTAATATTAGGCCGGCCGAGTAGAAAAACACCTGAAATAAACAGA
AGATTTCACCATCTCCCCTGCATCTCTGCCTGATCAGACATCATGCAATC
CGGGGAGAAACCCTCCGTGATGTCGTGATGTTGTCATCTACTTCTATGAT
AAGAACAAATCACACTCTTTGACTTAAACATAAAAAAATGCTAGTTTATA
AGTGAGATTGCCACAGTAGCAGTAAAATCAAAACAATAGAGAATACAAAA
TACAAAATGGTACAGGAGATACGAAGATACCGTACACACGACAGAAACCT
ACCATACTACAGTGGGGGTAAAAGCTACTGAACACTCCTACTTCCAAGCG
TGTGGTGCCCTACTGGTGGACCTAGCAGTTAAAAACGGGTTAGTATACGA
GGGATACTCCTTTGAAAACATTTAAGGCTGGCCTCCGCCAGAGTGGCCCG
GTAGCGTCCCCTGCTTTACTGTACACTCTGGATCAATTTTTTTATGTTGA
TTTTAGCAACTAAAAGTTGTCGAAATGCCCGCCGATTAAAAAAATATGGG
GCACCATCTCCTTGGCCAGTAGGCTAAGAGATATGTCGAAGGGCATCCCA
AAAGAGTAACATAGCCAGGGGGCAGGCTTCAAACAGATCCTTGTGCTTCG
AGTGGCGGTGTGACAAAAATGTACACTGCAACCGACCCTCTGAAGAGTAT
TATTCACCAACGAACTTGTTTATATTATATGGACTTCGGACCCTGTGTGA
GTATATCTTGGGATGGGAAGAAAATGGGGGTTAGCATGCCTACAACTGAT
CCCTCTGGAACGATATTTTCACAGACCGGACGTAGACTACTGACATTTGT
ATACATTAATAAAAGATCATTTTTGGCTCTTTTCGAACGGCTGTAAAACT
GCGGTCTAACTCCGACCTCAGCCTATGGCGGCGTAACGCCATGACAGGTG
CGCCCAACCAGAGGCTACGAGGAGACACAGGTGTACTCGAATAGTACCTT
GGAGCAATCTCTGGCGTCCTCAGCAGCGATGGCAGCCCCGTTTTGAAATG
GCAGTGACGTTTGCCATGTGTCAAGAGCTTTACAACAGTGGGTTTAGACA
TTCTACGAAGAACAGAGGACAGCGAAAGCTCTACAGCACCGCTAAAGAAA
CGAAGGCTACGCGATGGCAGCTGTTGTCCTTAGCTTTCGATGTATATATA
GGAACCCACTGGCCAAGGAGAATGTGCTCCATTTTAAATTGCGATGGCGC
TTAGGGTAATAGCGAAAATAGACAAAAAAAAACGGTTGCACCGCTATATA
ACTGCCATTTTTTTATGTTTGATCGACCGCCTGCCAAATACGTCAGTTTT
TGCCGGGTGCGGACCACAAAACTAACATGCCTCTTCGCCTTTTTCTGGGG
TTCGGCCTTTTCTCCTTAGCCACGTGGCGGCGGCCAGCCTTGAAGGGTGA
CATTTGTTTTCTGTGCCTATTCCTTCCATAAGCAGATTCTACGCTCATGT
ACTCGTTTTCTCTCGATCACGAACTTGCATAACAGATACAACGCTGGCAA
TTACGCTGGTTACTATCGTGTTATGCACGCGACGGGCCGGGGAGCGAGCT
TCAAGATACGCGGGCTTGGCTGGATGGTTCTGGATGCCTTTAACGTTGAT
CCTCTGCGCTATGCAGGTCAGTCTTCAGATCAACTGCTGTCGACCCGATG
AATCCTCGAGCGGCGACTTCAACCTTGTACGTACATGCACGACACCCCCT
GCTCGCGTAGGTGTTCGCCGACTGCAGCACGAACAACGTCGGCATCAGCG
CCGTGTGGAGCGCTTACGCAGGCTTCATCTTCTTAGGTTGGTACCGGGGA
GACTTCGGCTCGTCGAATGAGGGTGACCGTGGTACACATAAATCTTCACC
ATCCCTACTGCTGCCAACGCCGCACGCCGTGACCGCATCGCTGACGGTGT
GGGTGGGTGTCTGCGTTTACTATGCTATCGTTGAAGAGGCCATCACTACC
GTGGCCCACCTGGTGGCGTTCGGGGTGGGAATGGTGGCTCTCCTTCAGTT
CGAGGCGCTTCACCTCCTCCCAGGACATCCGTCGTGCTGTATTGGGCGGC
ACGCATATTTCATGAAGCGATCCGGCGGAGGGGCGAGCGAAGCTGAAACT
GCTGCAGACTCCACGCCGTATGATGAGCTTAGGTGATGGAAGAGTTTCGC
AAAGGACCAGCCAACCATACATACACACCATATGTGTTTCGTGGCTTCTG
TTATTTTCGTTTGCAGACTGAGAGATGACTGAGATCGTACGCGAGCGCGC
CCGCGGCTGTTTGCGTCTCTGCGTTAGTAACCTTTCTCGAAGTGGTGTTT
CGCTCGGTGTTGCTGTTTGATATTTATTCATGTACATACTTTCGAAGTAT
GTCTGTTTGATATTTATTCATGTACATACTTTCGAAGTATGTAGACTACT
GTAATCATGCGTTAGTAGGTATTGAGGTGCGATCGTTTTAGAAATCATTT
AAGAATGGCGTTAATTATCGCACCGGGGTGCGATAAGCCCGATTGATGGG
TGCGACCCCTGATAGAGGTGAGATAAACCAATTGAATAATGCTGTCTGTT
TCTAGCCCTTTCAGCGCACCCCCCGTTGCGATAACGCTGACGGATACGGT
GCTAAATAAAGCGTCACAGCGGTATATGGCGCTAAGATACTGTACAGGCA
CACCCCGGTGCTTACCTAGCGGGTTCCTTGGTTGGTACCATACAGCAGTT
CTGCAGCAAAGGACGTATACATTCCAGCGCAGTCACAGGCAACCGTAGCA
TAGCTTGGTGACGTGCAGTGAGTGCTGACCAGTCGGGGTCGAATGTGGGT
TTGGCGTACGGTAGCCAGTGAGGATGAAAAACGATGGCGACCGTTGCTGG
TAATGGTGTTCCAGTGTGTCTTCCAGCCTGTTTTTTTGTTTCCCGTGATG
TTTTGATGTTCTTCGGTGGTACGGCGGGGCCCTCTGGATGTGGGTACCGG
TGGGTTGCGGGATGTGTGTGGTTGTGTGTTTGGTGAGCATACGATGCTCT
CTGTGACGGCATACCATTAAATAAGACGCCTCGACGGGTTTCTACGCACG
CACCGCGAGAGCGCACAAAAAATAAGTGGACCCGATATTACCTCTTGCCA
GATTTCCTTGTCTACCCGCAGATACTCGTGTACATGCAACCGCACACACA
CCCGAATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig71:26740..31447+

>mRNA_L-elsbetiae_contig71.15904.1 ID=mRNA_L-elsbetiae_contig71.15904.1|Name=mRNA_L-elsbetiae_contig71.15904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig71:26740..31447+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTATGGGTGCGACTTGACGCGAGTGTTCACTTACGAGGGAAGCGA
GAAGGACAGCTTGATCAATTATGGTGTATGGGTGCGACTTGACGCGAGTG
TTCACTTACGAGGGAAGCGAGAAGGACAGCTTGATCAATTATACAACGCT
GGCAATTACGCTGGTTACTATCGTGTTATGCACGCGACGGGCCGGGGAGC
GAGCTTCAAGATACGCGGGCTTGGCTGGATGGTTCTGGATGCCTTTAACG
TTGATCCTCTGCGCTATGCAGATACAACGCTGGCAATTACGCTGGTTACT
ATCGTGTTATGCACGCGACGGGCCGGGGAGCGAGCTTCAAGATACGCGGG
CTTGGCTGGATGGTTCTGGATGCCTTTAACGTTGATCCTCTGCGCTATGC
AGGTGTTCGCCGACTGCAGCACGAACAACGTCGGCATCAGCGCCGTGTGG
AGCGCTTACGCAGGCTTCATCTTCTTAGGTTGGTACCGGGGAGACTTCGG
CTCGTCGAATGAGGGTGACCGTGGTACACATAAATCTTCACCATCCCTAC
TGCTGCCAACGCCGCACGCCGTGACCGCATCGCTGACGGTGTGGGTGGGT
GTCTGCGTTTACTATGCTATCGTTGAAGAGGCCATCACTACCGTGGCCCA
CCTGGTGGCGTTCGGGGTGGGAATGGTGGCTCTCCTTCAGTTCGAGGCGC
TTCACCTCCTCCCAGGACATCCGTCGTGCTGTATTGGGCGGCACGCATAT
TTCATGAAGCGATCCGGCGGAGGGGCGAGCGAAGCTGAAACTGCTGCAGA
CTCCACGCCGTATGATGAGCTTAGGTGAGTGTTCGCCGACTGCAGCACGA
ACAACGTCGGCATCAGCGCCGTGTGGAGCGCTTACGCAGGCTTCATCTTC
TTAGGTTGGTACCGGGGAGACTTCGGCTCGTCGAATGAGGGTGACCGTGG
TACACATAAATCTTCACCATCCCTACTGCTGCCAACGCCGCACGCCGTGA
CCGCATCGCTGACGGTGTGGGTGGGTGTCTGCGTTTACTATGCTATCGTT
GAAGAGGCCATCACTACCGTGGCCCACCTGGTGGCGTTCGGGGTGGGAAT
GGTGGCTCTCCTTCAGTTCGAGGCGCTTCACCTCCTCCCAGGACATCCGT
CGTGCTGTATTGGGCGGCACGCATATTTCATGAAGCGATCCGGCGGAGGG
GCGAGCGAAGCTGAAACTGCTGCAGACTCCACGCCGTATGATGAGCTTAG
GTGA
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