mRNA_L-elsbetiae_contig71.15901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig71.15901.1
Unique NamemRNA_L-elsbetiae_contig71.15901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig71.15901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig71contigL-elsbetiae_contig71:4663..8604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size2234
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.4209847-UTR-L-elsbetiae_contig71:4662..48121622816787.4209847-UTR-L-elsbetiae_contig71:4662..4812Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 4663..4812 -
1691683813.2812116-UTR-L-elsbetiae_contig71:4662..48121691683813.2812116-UTR-L-elsbetiae_contig71:4662..4812Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 4663..4812 -
1622816787.43181-UTR-L-elsbetiae_contig71:5140..60991622816787.43181-UTR-L-elsbetiae_contig71:5140..6099Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 5141..6099 -
1691683813.2906435-UTR-L-elsbetiae_contig71:5140..60991691683813.2906435-UTR-L-elsbetiae_contig71:5140..6099Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 5141..6099 -
1622816787.4424374-UTR-L-elsbetiae_contig71:6366..64721622816787.4424374-UTR-L-elsbetiae_contig71:6366..6472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 6367..6472 -
1691683813.2994452-UTR-L-elsbetiae_contig71:6366..64721691683813.2994452-UTR-L-elsbetiae_contig71:6366..6472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 6367..6472 -
1622816787.457148-UTR-L-elsbetiae_contig71:6691..67201622816787.457148-UTR-L-elsbetiae_contig71:6691..6720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 6692..6720 -
1691683813.3086455-UTR-L-elsbetiae_contig71:6691..67201691683813.3086455-UTR-L-elsbetiae_contig71:6691..6720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 6692..6720 -
1622816787.517289-UTR-L-elsbetiae_contig71:8430..86041622816787.517289-UTR-L-elsbetiae_contig71:8430..8604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 8431..8604 -
1691683813.3577003-UTR-L-elsbetiae_contig71:8430..86041691683813.3577003-UTR-L-elsbetiae_contig71:8430..8604Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig71 8431..8604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.4682968-CDS-L-elsbetiae_contig71:6720..68281622816787.4682968-CDS-L-elsbetiae_contig71:6720..6828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 6721..6828 -
1691683813.318121-CDS-L-elsbetiae_contig71:6720..68281691683813.318121-CDS-L-elsbetiae_contig71:6720..6828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 6721..6828 -
1622816787.480355-CDS-L-elsbetiae_contig71:7191..74361622816787.480355-CDS-L-elsbetiae_contig71:7191..7436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 7192..7436 -
1691683813.327887-CDS-L-elsbetiae_contig71:7191..74361691683813.327887-CDS-L-elsbetiae_contig71:7191..7436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 7192..7436 -
1622816787.4907253-CDS-L-elsbetiae_contig71:7821..81201622816787.4907253-CDS-L-elsbetiae_contig71:7821..8120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 7822..8120 -
1691683813.3404527-CDS-L-elsbetiae_contig71:7821..81201691683813.3404527-CDS-L-elsbetiae_contig71:7821..8120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 7822..8120 -
1622816787.5046144-CDS-L-elsbetiae_contig71:8266..84301622816787.5046144-CDS-L-elsbetiae_contig71:8266..8430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 8267..8430 -
1691683813.3488832-CDS-L-elsbetiae_contig71:8266..84301691683813.3488832-CDS-L-elsbetiae_contig71:8266..8430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig71 8267..8430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig71.15901.1prot_L-elsbetiae_contig71.15901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig71 6721..8430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig71.15901.1

>prot_L-elsbetiae_contig71.15901.1 ID=prot_L-elsbetiae_contig71.15901.1|Name=mRNA_L-elsbetiae_contig71.15901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MILECLPNTGTSEYLGLNYSTLYNAFVGLVTAGRGTFLIRYILSGGLISM
EAFNSAGEAEAAIDDSMASDHYERELLVFQSSAGAAAVLSTPLAPSTAAT
VEPAAHAAADGAPGGAQATILATGNPSSAAEVAVGGVSVTEEFPGSVVWA
TRGGVLWPATSQTALGQEQCAIRYLGPVTANSEEEMESSSLKKFPGGLQV
VLLKKRLEPTREWGDKAARDVDLRTDLLDAANEYEQRRQLVIDHAVHLRV
NYLWKHGKGVANVLTGRASTA*
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mRNA from alignment at L-elsbetiae_contig71:4663..8604-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig71.15901.1 ID=mRNA_L-elsbetiae_contig71.15901.1|Name=mRNA_L-elsbetiae_contig71.15901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3942bp|location=Sequence derived from alignment at L-elsbetiae_contig71:4663..8604- (Laminarionema elsbetiae ELsaHSoW15)
ATTTGAGCAGCAGCAAGGCAGCTTCTTCTTCGACTGTTTGCTGCTCATCC
GAGGCTACTACGGCAAGGTCCCACCTAGATGTACAGGATGGGGGGGAAAA
ATGAGGACATGTTCACCCTGCAACAAGGCACGTCCCATCTTATGTAGTTC
GACACGGAAGGAAAGTTTGATGACATGATCCTTGAATGCTTGCCCAATAC
AGGAACGTCAGAGTACCTGGGTCTGAATTATTCGACGTTGTACAATGCTT
TCGTGGGCCTCGTCACGGCGGGAAGGGGGACATTTCTCATTCGATACATC
CTGTCTGGGGGCCTTATTTCGATGGAGGCCTTCAACAGGCAAGTACGGTA
TCCGGAATGTTGCGGCAATGTTAGCAGTCGAACGCTTTATTAGCATCCAC
CGAAAACTAAGAATGTTGTTGGCGCGCGTTGTGTCGACTCCTCGCTGTTT
CATTTTTGGGCGCCGAACATCCCAACCCTCACAGTGCGGGAGAGGCTGAG
GCCGCCATCGACGATAGCATGGCATCGGACCACTATGAAAGAGAACTCTT
GGTTTTTCAATCAAGTGCTGGTGCTGCCGCCGTTTTGTCTACGCCACTAG
CGCCTAGTACGGCGGCGACGGTAGAACCTGCCGCCCATGCAGCGGCAGAT
GGGGCACCAGGTGGAGCACAGGCTACGATCCTCGCTACTGGGAATCCAAG
CTCCGCGGCAGAAGTCGCAGTTGGAGGAGTTTCAGTTACAGAAGAGTTTC
CAGGGTCGGTGGTTTGGGCGACTCGTGGCGGTGGTGAGTGTCGATGTTCC
GTGGTGGTCTTTCCGTTGTTGTTTTTAATTCTACATGTTTCCTTGGCGTC
GTCGGGCAAGTGTTTTGCGACTGCCTGTGATTTGTCGAGTGCATTGCTTT
TGGTTTCTCTAAGTTTTCCATGTATACGCTCAAATGCCAGCTCCCTACCC
CCCGGGTTTGAGGAGTATCCGTATTTGGAGGAGATATCGTAGGCGCATAT
CTACGTAGCCAATTTGCGCACAATGAGCAAAGACGCCCACGGCACGCTTT
ACCACTGAAGGGTGCGATGACTTCTCAAGCTCCCCCAGATAACATCAGCT
ACCCTGTGTATTCGCATGAAAAAACGACCACAACAACGTCAAACAACTCG
CCCCTCGTGTTTCTGCAGTACTCTGGCCTGCGACCAGCCAGACAGCCCTG
GGGCAGGAACAATGCGCCATTCGCTACTTGGGCCCCGTCACCGCCAATTC
TGAAGAAGAGATGGAGTCGTCTTCGCTCAAGAAGTTTCCGGGAGGTCTGC
AGGTGGTGCTGCTAAAGAAGAGGCTCGAGCCCACGCGGGAGTGGGGAGAT
AAAGCCGCAAGGGATGTCGACCTCAGGACCGACTTGCTTGACGCCGCCAA
CGAGTATGAGCAGGTAAAGGAGAAGGCTGTTTTGATTTTGTCCGTAATTG
TGTGAATGACTTGGTGTTTTCATTGTTAGGATGACGGACTTTCGTTTTCG
TGTGTATCACCTGATCGCGCGGTTTGGAAACGAACGGGTATGTTAAATTA
ATTGGTTCAATTTACGTTGCTAGGTTTAGGCTAAGCTTTGCCCAGTTCGA
ACGCGGTTGGCTCGTTTATTCTAGTTTCACCCAGCCGCGCAGCCTATGCG
AGGATTTAGAAACTGTCTATACAGTACTGGTGGTGTGGAAGAGTTTACAC
GCACATGCCCCTCGGGATTTCGGTGACATTTCCCCCCATGCCGCTGTGCT
ATCTGGTGTCTTGCATCGTGTAACAGAGGCGTCAGCTGGTTATTGACCAC
GCGGTACACCTCCGTGTCAACTACCTCTGGAAGCACGGCAAGGGCGTGGC
GAACGTACTCACGGGAAGAGCCTCAACGGCTTGAACAAGGGGCAGCGTGC
CCGCGAGCGGAAGGCGAGAGAATGGGATTGGCACGAGTATGTGTGTTGGT
TGTTGATCGTACATTTTTTCGGTCTGAGCACTCTTCATGTTAAAGGGGTT
GGTGTTGAAATCATTGGCCTTGTTGTGATGTTCTGGTGCCACAACTACCT
CCTGCTCATCCAAGAAGATAGTCGTTGGGTATTCTCCAATGTCTGAGGGA
ATCACTCCGCCTCCCCTTTTCCCCTGCCACAGGAGCGCATCGGCCTGTTT
CTCTGCTACCCGGAGCACTGGACCTCGAGCGCTGACACGCGGAGATCGTT
CCAGAGGCTCCGAGTAGTCTTCAACGACAAGCGCGAGGGTGAGGGAGCCC
ACCCATTTGCGGAGAGCTACGCCTGGCTGATATCTCTGTGCGTAACTGGA
TTGACAGGTGGCTTGATCTCTGTTTATCTCGTTGATTGGAAATAAGGTGT
GATCAGTTCTCGATAAATCGACATTTGTCATTCGGAAGGATGGCTCTTTT
TTGGACATGCCGGGTTGCTTGCCGTTTCTGCTGACATCCAAATCTTAAAC
TCTCGACTACGCAACCAATCTCGCCCCACGTTCCTCGGTTTTGATTGAGA
CACAGCCAAAGATCTTCGTCGCCATCGACTGCCGTCACAAGGCCACATCT
ACGGGGTGAGGGATCGGCGAGTCATGGCAGCGCAGCCGCCGAGGACTCAG
CAACCTCACTCGTCACCGCCAATTCACATCGTGAACCTCTGCCAAAAAAA
CGGCCCCATGGGCAACCAGAACCTTCGACAGAACGAAACTGCCGAGGTGG
TTCCTCGGCCAAGACTGTAGTGACTTCGAGGCCCTCCACGTCCACCACAG
GCAAGGGAAAACCAAACGGCACAAGGACTGTCGCTGCATCATGGGAGGTC
AGTGGCTCGGTAGTGGCAGCGACGGTAGTCGGAGAGCTGGAACCTAACGC
GAGCCGGGCTATAGGCAGAGAGCCGTTGTCTCTTGGATTCCGCAAGCGCG
GAGGATACACGATGGATGAGATGGTCGACATGCTGAACAAGCTGTATCGG
GAGGCTGGGATAACTCTGGATGCACACTTCTACTGGAAGCGTCTCGAGGA
GGCCGTTAGAGCAGCAGAGGCGCGGGCTCGAGCAGCAAACAATGCGTCGG
CCGGCGGCGGTGACGCCGGGACCCGTATAGGGGAAACGGCAGCGGTAGAG
GCTGCAGCGGTAGAGGTTGCAGCGGTAGTGGGAGCGGGAGCGGCATCGGC
CCTGTTCCACAGAGGCTAAAGAAATGCACGACACCTGGAGCGGGCGATGA
GCACTCGAACGGTGCTGGCGGTGCGGGACACACGAGCAAGAAGGCTACGA
ACTCCAGGAGTGCCTCGGCTACCCTCCCCACGATGACGACGGAGACCAAA
AGCCGGCATCGTAGACTCAAAATGCTTGAAACCGACAAGGAAGACGAATG
AAGTGACTCGGTGTCGTTAGTGGTGGCGAAGGTAGCACCAGCTGCTGCCG
TCACCAGCAACAGCAGTATGCCCATCACACCGAAGAAGAGAGCACCCAAA
AAGCAGAGGTCGAGGTAGGCATACCTGTTATGCTGTCGTTGAGATAAATT
GTGCTCAAGGCCATAGTCATCCTCGTGTATGTACATCGATTGCGGTGCAC
ACATTATCTTCAAATGTGGGGAGCATATCCGTTTGTAGGCGCGTTGCGGA
TGTGCGTTGAACGCTGGGTGCGGCAGCCGGCCTTACTTCAGCGCCCCTTT
CGGCATACATGTGGGGTTTTGTTCGAGCTTATATTCCCTGAGCAGTATCG
GATGCCCTTGATCCAGAACAGCCTAAATAGATACCAAATGCGCACGGTCA
TGGTGTATTGAGTTTTTTGCTTTATTTTTACAACATGCACAGGTGAGACC
TGCTCCCGCATCTGTATTTCTCCCGAGCCACAGCGATGGCGAGGATACCA
TCACGACGTCTCCCACCTGCAAACGCATGGCATGGCGTGGCAATGGTGGC
GGAGGCAAGGAACAGGACGGGTGACGACAACTGTGGCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig71:4663..8604-

>mRNA_L-elsbetiae_contig71.15901.1 ID=mRNA_L-elsbetiae_contig71.15901.1|Name=mRNA_L-elsbetiae_contig71.15901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig71:4663..8604- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTTGAATGCTTGCCCAATACAGGAACGTCAGAGTACCTGGGTCT
GAATTATTCGACGTTGTACAATGCTTTCGTGGGCCTCGTCACGGCGGGAA
GGGGGACATTTCTCATTCGATACATCCTGTCTGGGGGCCTTATTTCGATG
GAGGCCTTCAACAGATGATCCTTGAATGCTTGCCCAATACAGGAACGTCA
GAGTACCTGGGTCTGAATTATTCGACGTTGTACAATGCTTTCGTGGGCCT
CGTCACGGCGGGAAGGGGGACATTTCTCATTCGATACATCCTGTCTGGGG
GCCTTATTTCGATGGAGGCCTTCAACAGTGCGGGAGAGGCTGAGGCCGCC
ATCGACGATAGCATGGCATCGGACCACTATGAAAGAGAACTCTTGGTTTT
TCAATCAAGTGCTGGTGCTGCCGCCGTTTTGTCTACGCCACTAGCGCCTA
GTACGGCGGCGACGGTAGAACCTGCCGCCCATGCAGCGGCAGATGGGGCA
CCAGGTGGAGCACAGGCTACGATCCTCGCTACTGGGAATCCAAGCTCCGC
GGCAGAAGTCGCAGTTGGAGGAGTTTCAGTTACAGAAGAGTTTCCAGGGT
CGGTGGTTTGGGCGACTCGTGGCGGTGTGCGGGAGAGGCTGAGGCCGCCA
TCGACGATAGCATGGCATCGGACCACTATGAAAGAGAACTCTTGGTTTTT
CAATCAAGTGCTGGTGCTGCCGCCGTTTTGTCTACGCCACTAGCGCCTAG
TACGGCGGCGACGGTAGAACCTGCCGCCCATGCAGCGGCAGATGGGGCAC
CAGGTGGAGCACAGGCTACGATCCTCGCTACTGGGAATCCAAGCTCCGCG
GCAGAAGTCGCAGTTGGAGGAGTTTCAGTTACAGAAGAGTTTCCAGGGTC
GGTGGTTTGGGCGACTCGTGGCGGTGTACTCTGGCCTGCGACCAGCCAGA
CAGCCCTGGGGCAGGAACAATGCGCCATTCGCTACTTGGGCCCCGTCACC
GCCAATTCTGAAGAAGAGATGGAGTCGTCTTCGCTCAAGAAGTTTCCGGG
AGGTCTGCAGGTGGTGCTGCTAAAGAAGAGGCTCGAGCCCACGCGGGAGT
GGGGAGATAAAGCCGCAAGGGATGTCGACCTCAGGACCGACTTGCTTGAC
GCCGCCAACGAGTATGAGCAGTACTCTGGCCTGCGACCAGCCAGACAGCC
CTGGGGCAGGAACAATGCGCCATTCGCTACTTGGGCCCCGTCACCGCCAA
TTCTGAAGAAGAGATGGAGTCGTCTTCGCTCAAGAAGTTTCCGGGAGGTC
TGCAGGTGGTGCTGCTAAAGAAGAGGCTCGAGCCCACGCGGGAGTGGGGA
GATAAAGCCGCAAGGGATGTCGACCTCAGGACCGACTTGCTTGACGCCGC
CAACGAGTATGAGCAGAGGCGTCAGCTGGTTATTGACCACGCGGTACACC
TCCGTGTCAACTACCTCTGGAAGCACGGCAAGGGCGTGGCGAACGTACTC
ACGGGAAGAGCCTCAACGGCTTGAAGGCGTCAGCTGGTTATTGACCACGC
GGTACACCTCCGTGTCAACTACCTCTGGAAGCACGGCAAGGGCGTGGCGA
ACGTACTCACGGGAAGAGCCTCAACGGCTTGA
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