mRNA_L-elsbetiae_contig709.15893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: D7G4K9_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K9_ECTSI) HSP 1 Score: 531 bits (1368), Expect = 8.950e-171 Identity = 263/344 (76.45%), Postives = 304/344 (88.37%), Query Frame = 1 Query: 1 RLDLFRSLQSRAVLGPSQYLTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSH--VREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARVTAAYYSKEEVWVTPFAVVEKSNREVLRLYGKGVCSPFVELNGNLENRPFGAPGLGDFVASQPREAAAVRKCVDRLWLVQQDFFKHVSGLQSPHPVLFRYQHMFKGIKDKFVPMGSKRLQAYVRLGLLSKSALDSALDKHLPTTV 1026 RLD+F+SLQSRAVLGP+Q+LTAHMRAVLVDWCVEVA QFRLSTI+LHA +S+LDVCL+KVAVPRCRLQLLGVVCAMIQ+QAGGGCQVM+T+EAIHICDSQYNPSQVHSTFN+VVS TQEA R VPAT AEILHRHL SMG SGL PL++DWE+HSH +REE++LAGL++DLSLLD ++F FRPGT+AAAALFLARVT+ YY+KE +WVTP +VV K NREVLRLYGK VC PFV+ N +LE RPFGAPGLG+FVASQP EA AVR+CV+RLWLVQ+DFF H+SG QSP VLFRYQHMFKGIK+KFVP GS RLQAY +LGL+ + L+ LD+HLP+TV Sbjct: 292 RLDIFQSLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPSQVHSTFNVVVSITQEAMGRAVPATVAEILHRHLTSMGEPSGLDIPLTMDWEEHSHPRIREEHILAGLVVDLSLLDNFLFLFRPGTVAAAALFLARVTSMYYAKEGMWVTPCSVVAKKNREVLRLYGKDVCRPFVKPNKDLELRPFGAPGLGEFVASQPAEATAVRRCVERLWLVQRDFFDHLSGRQSPQHVLFRYQHMFKGIKEKFVPQGSIRLQAYQKLGLVQRGELNRMLDEHLPSTV 635
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A6H5JEY8_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY8_9PHAE) HSP 1 Score: 516 bits (1330), Expect = 1.630e-163 Identity = 257/344 (74.71%), Postives = 299/344 (86.92%), Query Frame = 1 Query: 1 RLDLFRSLQSRAVLGPSQYLTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSH--VREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARVTAAYYSKEEVWVTPFAVVEKSNREVLRLYGKGVCSPFVELNGNLENRPFGAPGLGDFVASQPREAAAVRKCVDRLWLVQQDFFKHVSGLQSPHPVLFRYQHMFKGIKDKFVPMGSKRLQAYVRLGLLSKSALDSALDKHLPTTV 1026 RLD+F+S+QS AVLGP+Q+LTAHMRAVLVDWCVEVA QFRLSTI+LHA +S+LDVCL+KVAVPRCRLQLLGVVCAMIQ+QAGGG QVM+T EAIHICDSQY PSQVHSTFN+VVS TQEA R VPAT AEILHRHL SMG SGL PL++DWE+HSH +REE++LAGL++DLSLLD ++F FRPGT+AA+ALFLARVT YY+KE +WVTP +VV K NREVLRLYGK VC PFV+ N +LE PFGAPGLG+FVASQP EA AVR+CV+RLWLVQ+DFF H+SG QSP VLFRYQHMFKGIK+KF+P+GS RLQAY +LGL+ + L+ LD+HLPTTV Sbjct: 417 RLDMFQSVQSGAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGGQVMNTPEAIHICDSQYTPSQVHSTFNVVVSITQEAMGRAVPATVAEILHRHLTSMGEPSGLDIPLTMDWEEHSHPRIREEHILAGLVVDLSLLDNFLFLFRPGTVAASALFLARVTGMYYAKEGMWVTPCSVVAKKNREVLRLYGKDVCRPFVKPNKDLELLPFGAPGLGEFVASQPAEATAVRRCVERLWLVQRDFFDHLSGRQSPQHVLFRYQHMFKGIKEKFMPLGSIRLQAYQKLGLVERGELNRMLDEHLPTTV 760
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A2V0PPT4_9CHLO (Cyclin-A2-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PPT4_9CHLO) HSP 1 Score: 78.2 bits (191), Expect = 2.360e-11 Identity = 59/178 (33.15%), Postives = 94/178 (52.81%), Query Frame = 1 Query: 58 LTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLAR 591 +T HMRA+LVDW VEVA ++RL + +LH ++ LD LSKV + R +LQL G+ C S+ + E I D+ Y+P Q+ + +V+ + + T+P TA L R+L + + D H LA L +++L+D+ + P ++AAA++FLAR Sbjct: 130 MTPHMRAILVDWLVEVALEYRLCSDTLHLTIALLDRFLSKVPISRDQLQLAGIACMWAASKYEE-IYAPTAREFCFITDNTYSPEQLVAMEALVLRGL--SFRLTLP-TAKAFLRRYLQAS----------AADERLH-------FLASFLCEVALMDEASMRHSPSSIAAASVFLAR 286
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A0D2NRM8_9CHLO (Cyclin-A1-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NRM8_9CHLO) HSP 1 Score: 73.6 bits (179), Expect = 4.310e-10 Identity = 69/218 (31.65%), Postives = 103/218 (47.25%), Query Frame = 1 Query: 52 QYLTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARV---------TAAYYSKEEVWVTPFAV--VEKSNREVL 672 Q +T HMRA+LVDW VEVA ++RL + +LH V+ LD LS + R +LQL G+ C M + S E I D+ Y P Q+ V+S + + T+P + A L R+L + L + LA L +LS++D+ P +AAA++FLAR T A+YS+ AV V +++R V+ Sbjct: 72 QDMTPHMRAILVDWLVEVAMEYRLCSDTLHLTVALLDRFLSVARIGRDQLQLAGIAC-MWAAAKYEEIYAPSAREFCFITDNTYTPKQLVDMEAHVLSAL--SFRLTLPTSKA-FLRRYLQASAANERL-----------------HFLASFLCELSMMDEAGLAHAPSAVAAASVFLARAMLQQAPWDATLAHYSRRRAADVAGAVQFVAETHRRVV 268
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A0K9PP11_ZOSMR (Cyclin A-like protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PP11_ZOSMR) HSP 1 Score: 73.9 bits (180), Expect = 5.170e-10 Identity = 63/182 (34.62%), Postives = 96/182 (52.75%), Query Frame = 1 Query: 58 LTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMS---TAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARV 594 +TA R VLVDW VEVA ++ LS+ +L+ AVS LD LS+ ++P+ +LQLLGV C + ++ + MS +AE I D+ + +V S I V E + VP T + S L+ LS+ + + + L L +LSLLD ++ P +AA+A+FLAR+ Sbjct: 127 VTARNRMVLVDWLVEVASEYNLSSHTLYLAVSCLDRFLSRRSIPKSKLQLLGVACMSVAAKY----EEMSPPNSAEFADITDNAFTKREV-SDMEINVLKVLEW-QIGVPTTKTFL-----------SRLLLLLSIQIQNNGSGTQLEFLTDYLAELSLLDYSCIRYPPSMIAASAVFLARL 291
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A7K4L2V4_9AVES (CCNB2 protein (Fragment) n=2 Tax=Crypturellus TaxID=48395 RepID=A0A7K4L2V4_9AVES) HSP 1 Score: 73.9 bits (180), Expect = 6.180e-10 Identity = 68/244 (27.87%), Postives = 115/244 (47.13%), Query Frame = 1 Query: 1 RLDLFRSLQSRAVLGPSQYLTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMS--TAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARVTAAYYSKEEVWVTPFAVVEKSNREVLRLYGKGVCSPFVELNGNL 726 +L+L +S++ R + G Q + MRA+LVDW V+V +FRL +L+ V+ +D L VPR RLQL+GV ++ S+ ++ S A+ ++I D+ Y +V +++ R +P H L +G D E+H+ LA L++L+L+D M ++ P +AAAAL L++ + W T + L + K + V++N NL Sbjct: 140 QLELQQSVRPRYLDG--QAINGRMRAILVDWLVQVHSRFRLLQETLYMCVAVMDRFLQSHPVPRKRLQLVGVTALLLASKYE---EIFSPDVADFVYITDNAYTSDEVREMEMVILQGLNFDLGRPLPL--------HFLRRASKAG-----EADAEQHT-------LAKYLMELTLVDYDMVQYHPSEIAAAALCLSQKILGHNK----WSTKQQYYTGYTEDSLMMPMKHMAKNVVKVNENL 354
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A4S8IXW8_MUSBA (Cyclin N-terminal domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IXW8_MUSBA) HSP 1 Score: 71.2 bits (173), Expect = 4.040e-9 Identity = 69/185 (37.30%), Postives = 98/185 (52.97%), Query Frame = 1 Query: 58 LTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTS--GLVRPLS-VDWE--KHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARVT 597 +TA+MRA+LVDW VEVA +++L + +L+ VS +D LS A+ R RLQLLGV +I S+ + +S A C + NT TK+ V ++IL MG+ + VR L+ D E K+ +++ E L L +LSLLD KF P LAAAA+F+AR T Sbjct: 131 VTANMRAILVDWLVEVAEEYKLVSDTLYLTVSYIDRFLSFNAINRHRLQLLGVSSMLIASKY----EEISPPNAEDFC--------------YITDNTY--TKQEVVKMESDILKFLKFEMGNPTIKTFVRRLTRADQEDGKYPNLQLE-YLGSYLAELSLLDYGCVKFLPSVLAAAAVFVARFT 294
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: M0ZRM3_SOLTU (Cyclin A n=5 Tax=Solanum TaxID=4107 RepID=M0ZRM3_SOLTU) HSP 1 Score: 71.6 bits (174), Expect = 4.880e-9 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 1 Query: 7 DLFRSLQSRAVLGPSQYLTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLARVT 597 ++ R QS + Q +T MRA+LVDW VEV+ +++L +L+ AV +D+ LS+ V R LQLLG+ C ++ S+ C E I D+ Y ++V + I+V N R TA L R VR ++ + E LA L +L+LL+ KF P +AA+++FLAR T Sbjct: 211 EIIRRPQSNFMETLQQDITESMRAILVDWIVEVSEEYKLVPDTLYLAVHFIDLFLSQNYVERKNLQLLGITCMLVASKYEEMCGPR-VEEFCFITDNAYTKNEVLA-MEILVLNFLGF--RLSTPTAKTFLRR----------FVRAAQASYKNPN--LELEFLANYLTELTLLEYGFLKFTPSAIAASSVFLARWT 391
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: A0A2I4GLD0_JUGRE (B-like cyclin n=11 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GLD0_JUGRE) HSP 1 Score: 71.6 bits (174), Expect = 5.570e-9 Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 1 Query: 58 LTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQVHSTFNIVVSNTQEATKRTVPATAAEILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLAR 591 + A MRAVL+DW VEVA ++RL +L V+ +D LS V R RLQLLGV C MI ++ C S E ++ D+ Y +V + V+++ K + A A+ R + + + V + ++ LA L++LSLL+ M ++ P +AA+A FLA+ Sbjct: 265 INASMRAVLIDWLVEVAEEYRLLPDTLFLTVNYIDRYLSGNVVNRQRLQLLGVACMMIAAKYEEIC-APSVDEFCYVTDNTYFKEEVLQMESAVLNSL----KFEMTAPTAKCFLRRFVCVVQATSKVPSMQLE-----------CLANYLMELSLLEYSMLRYSPSLVAASATFLAK 426
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Match: UPI00053CAA44 (cyclin-A1-2 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CAA44) HSP 1 Score: 71.6 bits (174), Expect = 5.790e-9 Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 58 LTAHMRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVCAMIQSQAGGGCQVMSTAEAIHICDSQYNPSQV---------HSTFNIVVSNTQEATKRTVPATAA----------EILHRHLLSMGHTSGLVRPLSVDWEKHSHVREENVLAGLLLDLSLLDQYMFKFRPGTLAAAALFLAR 591 + A MRAVLVDW VEVA ++RL +L+ +V+ +D LS + R +LQLLGV C MI ++ C E +I D+ Y ++V + F I + +R V A E LH + + M + + L V E LA L +LSLLD M ++ P +AA+A+FLAR Sbjct: 255 INAGMRAVLVDWLVEVAEEYRLIPETLYLSVNYIDRYLSGNVINRQKLQLLGVACMMIAAKYEEICPPQ-VEEFCYITDNTYFKNEVLEMESSVLNYLKFEITAPTAKCFLRRFVRAAQGTNEVLCHVQIEFLHVYSVGMSNRISHFQVLPVQLE---------CLASYLAELSLLDYAMLQYLPSLVAASAVFLAR 441 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig709.15893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig709.15893.1 >prot_L-elsbetiae_contig709.15893.1 ID=prot_L-elsbetiae_contig709.15893.1|Name=mRNA_L-elsbetiae_contig709.15893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp MRAVLVDWCVEVAFQFRLSTISLHAAVSALDVCLSKVAVPRCRLQLLGVVback to top mRNA from alignment at L-elsbetiae_contig709:23855..33717- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig709.15893.1 ID=mRNA_L-elsbetiae_contig709.15893.1|Name=mRNA_L-elsbetiae_contig709.15893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9863bp|location=Sequence derived from alignment at L-elsbetiae_contig709:23855..33717- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig709:23855..33717- >mRNA_L-elsbetiae_contig709.15893.1 ID=mRNA_L-elsbetiae_contig709.15893.1|Name=mRNA_L-elsbetiae_contig709.15893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig709:23855..33717- (Laminarionema elsbetiae ELsaHSoW15)back to top |