mRNA_L-elsbetiae_contig7088.15891.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7088.15891.1
Unique NamemRNA_L-elsbetiae_contig7088.15891.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 5.010e-48
Identity = 87/112 (77.68%), Postives = 91/112 (81.25%), Query Frame = 2 
Query:   47 MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFCTVS 382
            M+VPQLQFK CELD+ITLSWE  EG GYKLEFREILV DWAGCRS  IAP   S S E+S  V  LNPSS YIFRLYTV A G EVGPGPEIAFDTEVVSCAPTNKS CT+S
Sbjct:    1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSS-STEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
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BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.290e-21
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 2 
Query:   53 VPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFC 373
            +P L+F+ C+L+++TL W G  G  YKLEFR++    W    S  I P   S +   +V V DL PS  YIFRL+ + A G   GPGP+ AFDTEVVSC PT++S C
Sbjct:    8 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPP---SQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM73_ECTSI5.010e-4877.68Fibronectin type-III domain-containing protein n=2... [more]
A0A835YPU1_9STRA1.290e-2147.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7088contigL-elsbetiae_contig7088:3693..8258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFibronectin type III domain protein
Ec32 orthologEc-16_004820.1
Exons5
Model size1744
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.1472404-UTR-L-elsbetiae_contig7088:3692..37381622816786.1472404-UTR-L-elsbetiae_contig7088:3692..3738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 3693..3738 +
1691683812.220726-UTR-L-elsbetiae_contig7088:3692..37381691683812.220726-UTR-L-elsbetiae_contig7088:3692..3738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 3693..3738 +
1622816786.206594-UTR-L-elsbetiae_contig7088:6879..71401622816786.206594-UTR-L-elsbetiae_contig7088:6879..7140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 6880..7140 +
1691683812.2880387-UTR-L-elsbetiae_contig7088:6879..71401691683812.2880387-UTR-L-elsbetiae_contig7088:6879..7140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 6880..7140 +
1622816786.2219265-UTR-L-elsbetiae_contig7088:7160..82581622816786.2219265-UTR-L-elsbetiae_contig7088:7160..8258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 7161..8258 +
1691683812.3192418-UTR-L-elsbetiae_contig7088:7160..82581691683812.3192418-UTR-L-elsbetiae_contig7088:7160..8258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 7161..8258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.1596787-CDS-L-elsbetiae_contig7088:3738..37971622816786.1596787-CDS-L-elsbetiae_contig7088:3738..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 3739..3797 +
1691683812.2368076-CDS-L-elsbetiae_contig7088:3738..37971691683812.2368076-CDS-L-elsbetiae_contig7088:3738..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 3739..3797 +
1622816786.1769638-CDS-L-elsbetiae_contig7088:4082..41371622816786.1769638-CDS-L-elsbetiae_contig7088:4082..4137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 4083..4137 +
1691683812.247617-CDS-L-elsbetiae_contig7088:4082..41371691683812.247617-CDS-L-elsbetiae_contig7088:4082..4137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 4083..4137 +
1622816786.186908-CDS-L-elsbetiae_contig7088:5937..61151622816786.186908-CDS-L-elsbetiae_contig7088:5937..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 5938..6115 +
1691683812.2624235-CDS-L-elsbetiae_contig7088:5937..61151691683812.2624235-CDS-L-elsbetiae_contig7088:5937..6115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 5938..6115 +
1622816786.196797-CDS-L-elsbetiae_contig7088:6832..68791622816786.196797-CDS-L-elsbetiae_contig7088:6832..6879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 6833..6879 +
1691683812.273913-CDS-L-elsbetiae_contig7088:6832..68791691683812.273913-CDS-L-elsbetiae_contig7088:6832..6879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 6833..6879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7088.15891.1prot_L-elsbetiae_contig7088.15891.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7088 3739..6879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7088.15891.1

>prot_L-elsbetiae_contig7088.15891.1 ID=prot_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAP
AAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVS
CAPTNKSFCTVS*
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mRNA from alignment at L-elsbetiae_contig7088:3693..8258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7088.15891.1 ID=mRNA_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4566bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:3693..8258+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCTTCGGCAGTTGCCATTTGTTCTGGTACGTATCACCGTGCCAATGT
CAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGACGCTATCACTCTG
TCCTGGTAAGCCTTGGTGTCTACGAATTCGAGCTACTGCTGGGGTATGCC
TGTACGCATCCATGCACATCAAAGTGTTCTGAATAATCTCTCTCGCCTCG
CGGGCTGCGGTTGGAGATTTCTCCTCTTTCCCCCCTTGCGTTTGCCCCAT
CACCGCGACGGCACACTTACGTAGCTGTGGTTGGATTTTTACCATCAGTA
GATATGTACGGGGTGCGTATATAAGGCATGGGAAGCGAGAGATACTCACA
AATCAATACTGCACGCTCCCACCGAATACGACATGCTCAGGGAGGGAGTC
GAGGGCGCTGGCTATAAACTGGAATTCCGCGAGATTCTGGTGCCGGTAAG
AAAGTATAGAAAGGCATCGATAAAGAGGAGTACCGAAGGTCGGCAGTTGT
TTGCCGTTTGCCGTTTGCCGTTTGCCCGTTATTGGTGGCGCCGTTGCGGT
AGACAGGAGTACACGCGCGGACACTTGCGTTAGATACCTGGGAATGGAAA
TGTCAGATAAATAGTGTTTTGGAGAGTCCATGGACATGTAGTCTATATGT
CGTCACCAGGGCTCGATGATGTTGTCGACGTACCGTAATTTCCTCTGAGC
TCGCCCCGGGGGGCGAACCTAAGTATGGCGGTTCAAATATCGTCCCGGAG
CTATCTCAAAGGAGGAAGAGGGGGCGGTCTTTTTCAAAAACAAAAATAAG
CCCCGAAGCGCAAAGGTAAAGGCCCCGTGGCGTAGGCTCTTTTCGCACTG
CTAAAAAAGCTAAAAAGCTCCGGGGCGACAAGTAGATATGCAGGGCTGTA
TTTTGGCAGGTACCGTAAGAGGGAGCTGTCTGATCTGACTGCTATAGCCT
CCATTCGTAGAGAAGGGGTCAATCGTTTTTATTTGTTCTGCCTTTTTGGT
CTGTGCTGCTTCCGGTGCTACTATTAACCTACCGTATTGGTATTTTTCAA
GCTTGTTGATCACGTCTTCTGGTCGTGCCCTGTGTTGGGAAAATCTGTGC
GACCCGTCTTGCGTTTCCTAGCCACGACCAGCGGGGGATATGGAGACATT
CGCGTGATGGACTTGGGATCTGGCGGGCTTGGGGGTATCATAGGTACTCG
GAGCACGTTGTGTGGTCTTGTTGCACCGATGGGATGATGGAAATAAGTCA
GCTGAAGGAATACCAACGATAACAACACTTAAAAAACAAAGACGCCAACG
CCGAGAACCGCAACGAATGCTCAAGTAGGCACCGTGAATACACACGAACC
ATCGACACACACGAAACGCCCCATAGGGCATGCACAAAACAGCCTGGAAA
AATAACGCCCCGGGGCGTTCTCCGAGGTACGGGGGGCGAACTAGTATCAG
AACAAAATAACATATACCCCCGGGCTATCTCAAGGTTTTTGTGCTTGTTT
CGCGTGTTTTTTTTGGGAGGGGGCGAACTCATGGAGGGGGGCGAGCTCAG
AGGATATTGCGGTACATGTCGGCACCAGGCTCGGTGATGTTGCCGGCGTA
TCTTGTTGTCGTCTGCTACACGCGCCCAAGGATATTACTCATGTACGAGT
ACAGCTAACACCAACAGCTTACAAACACCAACAGCTTACAAACGAACCCA
AGCCGAGGTCTCGCTTTTCTTCTGCAAGACGAAAGTCAATGCTGCCCCCC
CGGTACTTCGAAGAGCGTGATTTTCTCCTGCAGCCGAGGAGGGCACTGCT
GTATTAGATATAAATAGTTTTCGTTGCTTAGCCCAGCCTCATTCCGGTGG
GGGAATATCTATAGTGAGTGCTCTTGAATCTGCCTCTCCGCATAATCTTG
CCAGCTTGTAGCCGCGAAGTCTTTGACCGCTCTTATATGACTGCTCTGTT
CTGTTCGGGATGGCTTGCACGCCATGTAGAACCGGCGGCCTTCACGGTCA
TTTTATTTATTTCAAGACAAACTTGGGTGTGCTCTGGGTGACCTCGCTTA
ACGAACTATGGTTATTTCGTTTGCTCTCCAACATGTACATACATAGACCA
GCGAAAACATGCCCACCCCCCCCCAAGTGTAAGAGTGGTATCAGTGCTGC
CATTGCCTCGTCCACATGGTCCCATCCTGCTCGTCTACCACGCTTCGAAA
CAAGTGTTGCTCGTTGCTTTTTGCCCGCCCTCCTGCTGCGCACAGGACTG
GGCAGGGTGCCGGTCCGAAACAATAGCGCCGGCAGCACCGTCACCTTCTG
CGGAGATTAGTGTCACCGTCGGCGATCTGAACCCGTCCTCTTGCTACATA
TTTCGACTCTACACCGTCGCCGCTGACGGGCACGAGGTTGGGCCAGGACC
GGAGATCGCTTTTGATACTGAAGGTACAAACACAGCAGTACGCTAGTTTT
TTAGGCAAAAGTACAGATACGTCAAGGTAGTTGCGGTTTATGATGTTTTG
TACAATCGCTCGATGGAGTGTGATGCATGCACATATGCTGTCCAGAAGTA
GTCAAAAATGACCACAACACCGCATTTCATGGCTGTTCTAGAATCGCGTT
TTTCGTGGCTTCGCCAAAGTAGACATGTGAGCTGGTCGATGTGCATCTGT
CAACCGCCGAACGGACTTGTGAGCAGGCTGCAAGAAATTTCTGTCACGAT
TTGTCTTTCATCACCCATATTCTGGTCAGGAGTATCCAGGGTTTCGAGAT
GAAAAAGTGTTTAGTCAGGGATTCAACAAACCCACGACTATTTTGATAGG
GGCTGAAATAAAACCATTAGACCAGTCAGCGGCTAACTGGTCTAATGGTT
TGATTTCGGCTCCTATAGCGCCTGTTCCCAGTCGTTAAACCGAGACGAAG
TAGAAATTGCACTTGTACATGTTTAGTGATGGTGTTCCCCTCCTCCTGTA
ATTCTCTCTCTCTCTCAGCGGTGTGGCTAGGTGTCGAGATGGCCTTGTGG
CGAAGGCCAGTAGTTTGGAACCGGGTACCGACCACATAGATACCTCCTCA
CCAGTGGGGCCAGAATTCCTGCAAGATGTAGCCGCTCAGTACCGCCCTTT
CTCCAACCCGCCTGGTGTGTACTCCTTGTTTCTCGTCCAGTGGTGTCTTG
CGCACCAACGAACAAATCGTTCTGCACCGTTTCCTGACGACAACTACTTT
CCGAGGGCCGGTGGAAAACTGGAGCTCAAGACGTTGTTTGAGAGGCACGT
GTCTTTTGATTGGGGCAGAGCTGACGTTTTCACGAGAACCATGACATTTA
TTTAATAATCCGCTGACCTTTTGCTCAGTGATATTTAAAACCACACCTGG
ATTTGAGATTGACTTTAGCACGCTGCGCGCGGGCGTCGTTGCCATAAAAA
CATAAGTTGTGCCTTTTCTTCTCTATTTGTTTCCGATTCACACTAGTGTA
CAAAGATGGTATTTTTCTGTCCCACAGGACATCTTATGCCATCTATACAG
CCCAATGGTCAGTGTTGGTGAAAATGAAGGAATGCTAGAATCAACGACGT
ACTGCCAATGATTGATTCGTCGGTGTACGGCTGAAAACTAGAGGCTGATT
AGGTACATTTTTTGAGGTATGCATTTCAGAGACCAAGGAAGGGGGTGCTC
TTGTATTTGGAAGCAGTTCACATTTCGGTGAACCGATCAGCAATCGCAAT
GAAGATATCTTCCTATCGCACGCCGTTACCGTGTATCATCACCCGGCTGA
TGCTTTTGGGATTTTTGTTCATTTTGCTGGGTGAACAGTGGTGTACGTAT
AACGTGCCCTATATTGAGGCCCTCCACACGGCTTTTGTAGATATACGCGC
GGAGAGAGTTGGCATGAATCGGCGTAACCCGGTTTACTGATTTAAATATT
TCAAGAGGTTCCGTGTACACGATAGAACCTCTTTTATTGTCTTTGCCTTG
GTATTTTTTCGAGTTTTCAAAATTTGTTGTTTTACAGTTCGCGTGTTCGG
AGTGGGAGCAGCTGAGCTGGGCCTATTTTGACGAGGGCCGTATGGCGATC
ATCTCTTGTTTTCAGTGTTTTCTCTTGAGTCGCGTTGATATCCTGTTTAT
TTTCTCTTCTGTTTTCTGTTGTTGGATGTCTCATACTTTTTGGACTTGAA
GGCTGCGGTTCACCAAGCCCGGTTCTTTGCGGGGTATTTGTGCAATAAAC
GTTTTCGCCGTGGCTGCCACGCCGACTCGGATGTTTTCTACATTGTTCGA
CCCTTAGCGTCCCGCTTTGCCACCATTGAACTGCTGTGTTTCAGAAGCAA
CAGTTTGCATTTCTCTTTAGATGATAAGTCCGCAGAATGCCTGTGGCTGT
CGGCAAAAGGCTGAGATTTTGCTGCTGCGAGGTGGGTGCAAGTTTACACA
CCACCGAATTGCGATCTTCAGGAGTCAAGATAAATCGCCGTTTAGTGTAC
AGGAAAGTAGAAAGATCGCCCTTCACAAGTAGCAACAGCGCACTTCTTTT
GGAGGGTCTACTGATATGGTCTGTAGGAGGCGTCGCATGTCCCGGACAGC
AGAAGCAGCAGGTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7088:3693..8258+

>mRNA_L-elsbetiae_contig7088.15891.1 ID=mRNA_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:3693..8258+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGACGCTATCAC
TCTGTCCTGATGTCAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGA
CGCTATCACTCTGTCCTGGGAGGGAGTCGAGGGCGCTGGCTATAAACTGG
AATTCCGCGAGATTCTGGTGCCGGGAGGGAGTCGAGGGCGCTGGCTATAA
ACTGGAATTCCGCGAGATTCTGGTGCCGGACTGGGCAGGGTGCCGGTCCG
AAACAATAGCGCCGGCAGCACCGTCACCTTCTGCGGAGATTAGTGTCACC
GTCGGCGATCTGAACCCGTCCTCTTGCTACATATTTCGACTCTACACCGT
CGCCGCTGACGGGCACGAGGTTGGGCCAGGACCGGAGATCGCTTTTGATA
CTGAAGGACTGGGCAGGGTGCCGGTCCGAAACAATAGCGCCGGCAGCACC
GTCACCTTCTGCGGAGATTAGTGTCACCGTCGGCGATCTGAACCCGTCCT
CTTGCTACATATTTCGACTCTACACCGTCGCCGCTGACGGGCACGAGGTT
GGGCCAGGACCGGAGATCGCTTTTGATACTGAAGTGGTGTCTTGCGCACC
AACGAACAAATCGTTCTGCACCGTTTCCTGATGGTGTCTTGCGCACCAAC
GAACAAATCGTTCTGCACCGTTTCCTGA
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