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Homology
BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI) HSP 1 Score: 172 bits (436), Expect = 5.010e-48 Identity = 87/112 (77.68%), Postives = 91/112 (81.25%), Query Frame = 2
Query: 47 MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFCTVS 382
M+VPQLQFK CELD+ITLSWE EG GYKLEFREILV DWAGCRS IAP S S E+S V LNPSS YIFRLYTV A G EVGPGPEIAFDTEVVSCAPTNKS CT+S
Sbjct: 1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSS-STEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
BLAST of mRNA_L-elsbetiae_contig7088.15891.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.290e-21 Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 2
Query: 53 VPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAPAAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVSCAPTNKSFC 373
+P L+F+ C+L+++TL W G G YKLEFR++ W S I P S + +V V DL PS YIFRL+ + A G GPGP+ AFDTEVVSC PT++S C
Sbjct: 8 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPP---SQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Fibronectin type III domain protein |
Ec32 ortholog | Ec-16_004820.1 |
Exons | 5 |
Model size | 1744 |
Cds size | 339 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816786.1472404-UTR-L-elsbetiae_contig7088:3692..3738 | 1622816786.1472404-UTR-L-elsbetiae_contig7088:3692..3738 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 3693..3738 + |
1691683812.220726-UTR-L-elsbetiae_contig7088:3692..3738 | 1691683812.220726-UTR-L-elsbetiae_contig7088:3692..3738 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 3693..3738 + |
1622816786.206594-UTR-L-elsbetiae_contig7088:6879..7140 | 1622816786.206594-UTR-L-elsbetiae_contig7088:6879..7140 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 6880..7140 + |
1691683812.2880387-UTR-L-elsbetiae_contig7088:6879..7140 | 1691683812.2880387-UTR-L-elsbetiae_contig7088:6879..7140 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 6880..7140 + |
1622816786.2219265-UTR-L-elsbetiae_contig7088:7160..8258 | 1622816786.2219265-UTR-L-elsbetiae_contig7088:7160..8258 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 7161..8258 + |
1691683812.3192418-UTR-L-elsbetiae_contig7088:7160..8258 | 1691683812.3192418-UTR-L-elsbetiae_contig7088:7160..8258 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7088 7161..8258 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816786.1596787-CDS-L-elsbetiae_contig7088:3738..3797 | 1622816786.1596787-CDS-L-elsbetiae_contig7088:3738..3797 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 3739..3797 + |
1691683812.2368076-CDS-L-elsbetiae_contig7088:3738..3797 | 1691683812.2368076-CDS-L-elsbetiae_contig7088:3738..3797 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 3739..3797 + |
1622816786.1769638-CDS-L-elsbetiae_contig7088:4082..4137 | 1622816786.1769638-CDS-L-elsbetiae_contig7088:4082..4137 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 4083..4137 + |
1691683812.247617-CDS-L-elsbetiae_contig7088:4082..4137 | 1691683812.247617-CDS-L-elsbetiae_contig7088:4082..4137 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 4083..4137 + |
1622816786.186908-CDS-L-elsbetiae_contig7088:5937..6115 | 1622816786.186908-CDS-L-elsbetiae_contig7088:5937..6115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 5938..6115 + |
1691683812.2624235-CDS-L-elsbetiae_contig7088:5937..6115 | 1691683812.2624235-CDS-L-elsbetiae_contig7088:5937..6115 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 5938..6115 + |
1622816786.196797-CDS-L-elsbetiae_contig7088:6832..6879 | 1622816786.196797-CDS-L-elsbetiae_contig7088:6832..6879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 6833..6879 + |
1691683812.273913-CDS-L-elsbetiae_contig7088:6832..6879 | 1691683812.273913-CDS-L-elsbetiae_contig7088:6832..6879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7088 6833..6879 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7088.15891.1 >prot_L-elsbetiae_contig7088.15891.1 ID=prot_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MSVPQLQFKGCELDAITLSWEGVEGAGYKLEFREILVPDWAGCRSETIAP AAPSPSAEISVTVGDLNPSSCYIFRLYTVAADGHEVGPGPEIAFDTEVVS CAPTNKSFCTVS* back to topmRNA from alignment at L-elsbetiae_contig7088:3693..8258+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7088.15891.1 ID=mRNA_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4566bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:3693..8258+ (Laminarionema elsbetiae ELsaHSoW15) CCATCTTCGGCAGTTGCCATTTGTTCTGGTACGTATCACCGTGCCAATGT
CAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGACGCTATCACTCTG
TCCTGGTAAGCCTTGGTGTCTACGAATTCGAGCTACTGCTGGGGTATGCC
TGTACGCATCCATGCACATCAAAGTGTTCTGAATAATCTCTCTCGCCTCG
CGGGCTGCGGTTGGAGATTTCTCCTCTTTCCCCCCTTGCGTTTGCCCCAT
CACCGCGACGGCACACTTACGTAGCTGTGGTTGGATTTTTACCATCAGTA
GATATGTACGGGGTGCGTATATAAGGCATGGGAAGCGAGAGATACTCACA
AATCAATACTGCACGCTCCCACCGAATACGACATGCTCAGGGAGGGAGTC
GAGGGCGCTGGCTATAAACTGGAATTCCGCGAGATTCTGGTGCCGGTAAG
AAAGTATAGAAAGGCATCGATAAAGAGGAGTACCGAAGGTCGGCAGTTGT
TTGCCGTTTGCCGTTTGCCGTTTGCCCGTTATTGGTGGCGCCGTTGCGGT
AGACAGGAGTACACGCGCGGACACTTGCGTTAGATACCTGGGAATGGAAA
TGTCAGATAAATAGTGTTTTGGAGAGTCCATGGACATGTAGTCTATATGT
CGTCACCAGGGCTCGATGATGTTGTCGACGTACCGTAATTTCCTCTGAGC
TCGCCCCGGGGGGCGAACCTAAGTATGGCGGTTCAAATATCGTCCCGGAG
CTATCTCAAAGGAGGAAGAGGGGGCGGTCTTTTTCAAAAACAAAAATAAG
CCCCGAAGCGCAAAGGTAAAGGCCCCGTGGCGTAGGCTCTTTTCGCACTG
CTAAAAAAGCTAAAAAGCTCCGGGGCGACAAGTAGATATGCAGGGCTGTA
TTTTGGCAGGTACCGTAAGAGGGAGCTGTCTGATCTGACTGCTATAGCCT
CCATTCGTAGAGAAGGGGTCAATCGTTTTTATTTGTTCTGCCTTTTTGGT
CTGTGCTGCTTCCGGTGCTACTATTAACCTACCGTATTGGTATTTTTCAA
GCTTGTTGATCACGTCTTCTGGTCGTGCCCTGTGTTGGGAAAATCTGTGC
GACCCGTCTTGCGTTTCCTAGCCACGACCAGCGGGGGATATGGAGACATT
CGCGTGATGGACTTGGGATCTGGCGGGCTTGGGGGTATCATAGGTACTCG
GAGCACGTTGTGTGGTCTTGTTGCACCGATGGGATGATGGAAATAAGTCA
GCTGAAGGAATACCAACGATAACAACACTTAAAAAACAAAGACGCCAACG
CCGAGAACCGCAACGAATGCTCAAGTAGGCACCGTGAATACACACGAACC
ATCGACACACACGAAACGCCCCATAGGGCATGCACAAAACAGCCTGGAAA
AATAACGCCCCGGGGCGTTCTCCGAGGTACGGGGGGCGAACTAGTATCAG
AACAAAATAACATATACCCCCGGGCTATCTCAAGGTTTTTGTGCTTGTTT
CGCGTGTTTTTTTTGGGAGGGGGCGAACTCATGGAGGGGGGCGAGCTCAG
AGGATATTGCGGTACATGTCGGCACCAGGCTCGGTGATGTTGCCGGCGTA
TCTTGTTGTCGTCTGCTACACGCGCCCAAGGATATTACTCATGTACGAGT
ACAGCTAACACCAACAGCTTACAAACACCAACAGCTTACAAACGAACCCA
AGCCGAGGTCTCGCTTTTCTTCTGCAAGACGAAAGTCAATGCTGCCCCCC
CGGTACTTCGAAGAGCGTGATTTTCTCCTGCAGCCGAGGAGGGCACTGCT
GTATTAGATATAAATAGTTTTCGTTGCTTAGCCCAGCCTCATTCCGGTGG
GGGAATATCTATAGTGAGTGCTCTTGAATCTGCCTCTCCGCATAATCTTG
CCAGCTTGTAGCCGCGAAGTCTTTGACCGCTCTTATATGACTGCTCTGTT
CTGTTCGGGATGGCTTGCACGCCATGTAGAACCGGCGGCCTTCACGGTCA
TTTTATTTATTTCAAGACAAACTTGGGTGTGCTCTGGGTGACCTCGCTTA
ACGAACTATGGTTATTTCGTTTGCTCTCCAACATGTACATACATAGACCA
GCGAAAACATGCCCACCCCCCCCCAAGTGTAAGAGTGGTATCAGTGCTGC
CATTGCCTCGTCCACATGGTCCCATCCTGCTCGTCTACCACGCTTCGAAA
CAAGTGTTGCTCGTTGCTTTTTGCCCGCCCTCCTGCTGCGCACAGGACTG
GGCAGGGTGCCGGTCCGAAACAATAGCGCCGGCAGCACCGTCACCTTCTG
CGGAGATTAGTGTCACCGTCGGCGATCTGAACCCGTCCTCTTGCTACATA
TTTCGACTCTACACCGTCGCCGCTGACGGGCACGAGGTTGGGCCAGGACC
GGAGATCGCTTTTGATACTGAAGGTACAAACACAGCAGTACGCTAGTTTT
TTAGGCAAAAGTACAGATACGTCAAGGTAGTTGCGGTTTATGATGTTTTG
TACAATCGCTCGATGGAGTGTGATGCATGCACATATGCTGTCCAGAAGTA
GTCAAAAATGACCACAACACCGCATTTCATGGCTGTTCTAGAATCGCGTT
TTTCGTGGCTTCGCCAAAGTAGACATGTGAGCTGGTCGATGTGCATCTGT
CAACCGCCGAACGGACTTGTGAGCAGGCTGCAAGAAATTTCTGTCACGAT
TTGTCTTTCATCACCCATATTCTGGTCAGGAGTATCCAGGGTTTCGAGAT
GAAAAAGTGTTTAGTCAGGGATTCAACAAACCCACGACTATTTTGATAGG
GGCTGAAATAAAACCATTAGACCAGTCAGCGGCTAACTGGTCTAATGGTT
TGATTTCGGCTCCTATAGCGCCTGTTCCCAGTCGTTAAACCGAGACGAAG
TAGAAATTGCACTTGTACATGTTTAGTGATGGTGTTCCCCTCCTCCTGTA
ATTCTCTCTCTCTCTCAGCGGTGTGGCTAGGTGTCGAGATGGCCTTGTGG
CGAAGGCCAGTAGTTTGGAACCGGGTACCGACCACATAGATACCTCCTCA
CCAGTGGGGCCAGAATTCCTGCAAGATGTAGCCGCTCAGTACCGCCCTTT
CTCCAACCCGCCTGGTGTGTACTCCTTGTTTCTCGTCCAGTGGTGTCTTG
CGCACCAACGAACAAATCGTTCTGCACCGTTTCCTGACGACAACTACTTT
CCGAGGGCCGGTGGAAAACTGGAGCTCAAGACGTTGTTTGAGAGGCACGT
GTCTTTTGATTGGGGCAGAGCTGACGTTTTCACGAGAACCATGACATTTA
TTTAATAATCCGCTGACCTTTTGCTCAGTGATATTTAAAACCACACCTGG
ATTTGAGATTGACTTTAGCACGCTGCGCGCGGGCGTCGTTGCCATAAAAA
CATAAGTTGTGCCTTTTCTTCTCTATTTGTTTCCGATTCACACTAGTGTA
CAAAGATGGTATTTTTCTGTCCCACAGGACATCTTATGCCATCTATACAG
CCCAATGGTCAGTGTTGGTGAAAATGAAGGAATGCTAGAATCAACGACGT
ACTGCCAATGATTGATTCGTCGGTGTACGGCTGAAAACTAGAGGCTGATT
AGGTACATTTTTTGAGGTATGCATTTCAGAGACCAAGGAAGGGGGTGCTC
TTGTATTTGGAAGCAGTTCACATTTCGGTGAACCGATCAGCAATCGCAAT
GAAGATATCTTCCTATCGCACGCCGTTACCGTGTATCATCACCCGGCTGA
TGCTTTTGGGATTTTTGTTCATTTTGCTGGGTGAACAGTGGTGTACGTAT
AACGTGCCCTATATTGAGGCCCTCCACACGGCTTTTGTAGATATACGCGC
GGAGAGAGTTGGCATGAATCGGCGTAACCCGGTTTACTGATTTAAATATT
TCAAGAGGTTCCGTGTACACGATAGAACCTCTTTTATTGTCTTTGCCTTG
GTATTTTTTCGAGTTTTCAAAATTTGTTGTTTTACAGTTCGCGTGTTCGG
AGTGGGAGCAGCTGAGCTGGGCCTATTTTGACGAGGGCCGTATGGCGATC
ATCTCTTGTTTTCAGTGTTTTCTCTTGAGTCGCGTTGATATCCTGTTTAT
TTTCTCTTCTGTTTTCTGTTGTTGGATGTCTCATACTTTTTGGACTTGAA
GGCTGCGGTTCACCAAGCCCGGTTCTTTGCGGGGTATTTGTGCAATAAAC
GTTTTCGCCGTGGCTGCCACGCCGACTCGGATGTTTTCTACATTGTTCGA
CCCTTAGCGTCCCGCTTTGCCACCATTGAACTGCTGTGTTTCAGAAGCAA
CAGTTTGCATTTCTCTTTAGATGATAAGTCCGCAGAATGCCTGTGGCTGT
CGGCAAAAGGCTGAGATTTTGCTGCTGCGAGGTGGGTGCAAGTTTACACA
CCACCGAATTGCGATCTTCAGGAGTCAAGATAAATCGCCGTTTAGTGTAC
AGGAAAGTAGAAAGATCGCCCTTCACAAGTAGCAACAGCGCACTTCTTTT
GGAGGGTCTACTGATATGGTCTGTAGGAGGCGTCGCATGTCCCGGACAGC
AGAAGCAGCAGGTAGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7088:3693..8258+ >mRNA_L-elsbetiae_contig7088.15891.1 ID=mRNA_L-elsbetiae_contig7088.15891.1|Name=mRNA_L-elsbetiae_contig7088.15891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:3693..8258+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGACGCTATCAC TCTGTCCTGATGTCAGTTCCGCAGCTGCAGTTCAAGGGGTGCGAGCTAGA CGCTATCACTCTGTCCTGGGAGGGAGTCGAGGGCGCTGGCTATAAACTGG AATTCCGCGAGATTCTGGTGCCGGGAGGGAGTCGAGGGCGCTGGCTATAA ACTGGAATTCCGCGAGATTCTGGTGCCGGACTGGGCAGGGTGCCGGTCCG AAACAATAGCGCCGGCAGCACCGTCACCTTCTGCGGAGATTAGTGTCACC GTCGGCGATCTGAACCCGTCCTCTTGCTACATATTTCGACTCTACACCGT CGCCGCTGACGGGCACGAGGTTGGGCCAGGACCGGAGATCGCTTTTGATA CTGAAGGACTGGGCAGGGTGCCGGTCCGAAACAATAGCGCCGGCAGCACC GTCACCTTCTGCGGAGATTAGTGTCACCGTCGGCGATCTGAACCCGTCCT CTTGCTACATATTTCGACTCTACACCGTCGCCGCTGACGGGCACGAGGTT GGGCCAGGACCGGAGATCGCTTTTGATACTGAAGTGGTGTCTTGCGCACC AACGAACAAATCGTTCTGCACCGTTTCCTGATGGTGTCTTGCGCACCAAC GAACAAATCGTTCTGCACCGTTTCCTGA back to top
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