mRNA_L-elsbetiae_contig7088.15890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7088.15890.1
Unique NamemRNA_L-elsbetiae_contig7088.15890.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Match: D7FM72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM72_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.560e-83
Identity = 130/195 (66.67%), Postives = 145/195 (74.36%), Query Frame = 1 
Query:  136 VNQDTMLHRHSQDSFFLFFRTAKIRNEVVGKEPFEVELEAGSFYWGDHLANPIVHKICVGKHELDCMDVEFKAGRPKPARLGPALPNDTPKRDLCFENHVLRAYRVKLAPGESVDGALAIEGGEGSESKGLEVGFAYLAVALKSARLSRGGVKAGGNWWCGGGVQD------------TWSNVGEQEAEAMILQP 684
            +NQDTM HRHSQDSFFLFFRTA+IRNEVVGKEPFEVELEAGSFYWGDHLANPI+HK+CVG  +LDCMD+E KA RP+PA L PALP+ T +RDLCFEN VLRAYRVKLAPGE +       GG+GS    + V F YLAVA+  A+LS GGV  G NWWCG    D             WSNVGE+E E MILQP
Sbjct:    1 MNQDTMYHRHSQDSFFLFFRTAQIRNEVVGKEPFEVELEAGSFYWGDHLANPIIHKVCVGNRKLDCMDIEIKADRPRPASLSPALPS-TLQRDLCFENGVLRAYRVKLAPGECIGSVFDAGGGDGSM---VPVPFGYLAVAMTIAKLSSGGVMPGDNWWCGKSSGDISAGDAGTTTDGAWSNVGEEEVEVMILQP 191
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BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Match: A0A6H5KK12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK12_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.050e-32
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:  334 MDVEFKAGRPKPARLGPALPNDTPKRDLCFENHVLRAYRVKLAPGESVDGALAIEGGEGSESKGLEVGFAYLAVALKSARLSRGGVKAGGNWWCGGGVQD------------TWSNVGEQEAEAMILQP 684
            MD+E K  RP+PA + PALP+ T +RDLCFEN VLRAYRVKLAPGE +       GG+GS    + V F YLAVA+  A+LS G VK G NWWCG    D             WSNVGE+E E MILQP
Sbjct:    1 MDIEIKVDRPRPASVSPALPS-TSQRDLCFENGVLRAYRVKLAPGEFIGSVFDAGGGKGSM---VPVPFGYLAVAMTIAQLSSGEVKPGDNWWCGKSSGDISAGEAGTTADGAWSNVGEEEVEVMILQP 125
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BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Match: UPI00067D068C (hypothetical protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI00067D068C)

HSP 1 Score: 77.0 bits (188), Expect = 1.050e-12
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:   58 VEVYDEPLHPTVFENNCVRVLKVDCPVNQDTMLHRHSQDSFFLFFRTAKIRNEVVGKEPFEVELEAGSFYWGDHLANPIVHKICVGKHELDCMDVEFKAGRPKPARLGPALPNDTPKRDLCFENHVLRAYRVKLAPGES 474
            V V   P H   F+++ + ++ V  P    T  H H QD  F+    AKI+N+V+GKEP E+E + G   +  +   P VH++   + +     + F    P+P R   ++     K ++  +N  +RA+R+KL+PGES
Sbjct:   29 VPVTKAPFHLFTFQDDNMSLVSVTLPPGFSTGYHSHDQDLVFVITAGAKIKNQVLGKEPVELEFKTGEVRFASYTKTPGVHQVINIEKDHAMRLLAFAIVYPEPGRY--SVSTRPAKYEVALDNDRVRAWRLKLSPGES 165
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BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-9
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   49 LEYVEVYDEPLHPTVFENNCVRVLKVDCPVNQDTMLHRHSQDSFFLFFRTAKIRNEVVGKEPFEVELEAGSFYWGDHLANPIVHKICV 312
            +EYVEVYDEP+H   F N             +  M HRHSQDSF++   + +  N    K   E+ L+AG  +W  + A  +VH++C+
Sbjct:   12 VEYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYVALASCEAINRPTDKPEGELNLKAGDKWWSLYKAKDMVHQVCL 99
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BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Match: A0A2V9ZL29_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9ZL29_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.300e-5
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   58 VEVYDEPLHPTVFENNCVRVLKVDCPVNQDTMLHRHSQDSFFLFFRTAKIRNEVVGKEPFEVELEAG 258
            VE+  EP H    EN  VRV KV+ P + +T++H H  D FF+     ++ N+V GK P  ++L+ G
Sbjct:   27 VEITAEPHHHLALENEYVRVFKVEVPSHNETLMHWHHHDYFFVTLGDTQVENDVKGKPPATLKLQDG 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7088.15890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM72_ECTSI1.560e-8366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK12_9PHAE1.050e-3254.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00067D068C1.050e-1230.94hypothetical protein n=1 Tax=Bradyrhizobium tropic... [more]
A0A836C8W9_9STRA1.620e-936.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V9ZL29_9BACT1.300e-538.81Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7088contigL-elsbetiae_contig7088:2..2975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog159749.K0TLE6
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
EggNOG OGs2XBBI@2836,COG2084@1,KOG0409@2759
EC1.1.1.31
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_004830.1
Exons3
Model size1056
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7088.15890.1prot_L-elsbetiae_contig7088.15890.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7088 368..2975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.0824618-UTR-L-elsbetiae_contig7088:1..3671622816786.0824618-UTR-L-elsbetiae_contig7088:1..367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 2..367 -
1691683812.168152-UTR-L-elsbetiae_contig7088:1..3671691683812.168152-UTR-L-elsbetiae_contig7088:1..367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7088 2..367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.095147-CDS-L-elsbetiae_contig7088:367..7541622816786.095147-CDS-L-elsbetiae_contig7088:367..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 368..754 -
1691683812.1808414-CDS-L-elsbetiae_contig7088:367..7541691683812.1808414-CDS-L-elsbetiae_contig7088:367..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 368..754 -
1622816786.105192-CDS-L-elsbetiae_contig7088:2153..22521622816786.105192-CDS-L-elsbetiae_contig7088:2153..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 2154..2252 -
1691683812.191026-CDS-L-elsbetiae_contig7088:2153..22521691683812.191026-CDS-L-elsbetiae_contig7088:2153..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 2154..2252 -
1622816786.1163416-CDS-L-elsbetiae_contig7088:2771..29751622816786.1163416-CDS-L-elsbetiae_contig7088:2771..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 2772..2975 -
1691683812.200902-CDS-L-elsbetiae_contig7088:2771..29751691683812.200902-CDS-L-elsbetiae_contig7088:2771..2975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7088 2772..2975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7088.15890.1

>prot_L-elsbetiae_contig7088.15890.1 ID=prot_L-elsbetiae_contig7088.15890.1|Name=mRNA_L-elsbetiae_contig7088.15890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MATAETPALPVDGPAVLEYVEVYDEPLHPTVFENNCVRVLKVDCPVNQDT
MLHRHSQDSFFLFFRTAKIRNEVVGKEPFEVELEAGSFYWGDHLANPIVH
KICVGKHELDCMDVEFKAGRPKPARLGPALPNDTPKRDLCFENHVLRAYR
VKLAPGESVDGALAIEGGEGSESKGLEVGFAYLAVALKSARLSRGGVKAG
GNWWCGGGVQDTWSNVGEQEAEAMILQPK*
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mRNA from alignment at L-elsbetiae_contig7088:2..2975-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7088.15890.1 ID=mRNA_L-elsbetiae_contig7088.15890.1|Name=mRNA_L-elsbetiae_contig7088.15890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2974bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:2..2975- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACAGCAGAGACCCCGGCGCTTCCCGTAGATGGACCAGCGGTACT
GGAATATGTCGAGGTCTACGACGAACCGCTGCACCCCACGGTATTCGAGA
ACAATTGTGTCAGAGTTCTGAAGGTGGACTGCCCTGTGAACCAAGACACG
ATGCTCCATCGGCATAGCCAAGACAGCTTCTTCCTCTTCTTTCGAACGGC
CAAGGTATTGATTGCTACATATCATTGGTTCGTTTTGCCATCCGACAACT
GCAGATGAATTCAAAACTAAACACTCGAACGATATGTACCAATACATCAA
GAGAACCTGACATAGATATACGTACATATGATGATATATAAAAATATGTT
ATGTATCTGTGTAGACTATGTACTCTGTAAAAGGATTTTGAAAGAACTTT
TGATCCACTCTGTGTCTAGTTTGTCGTGCAACGCGTCGGCAAGCAGAGTG
TCCCGGTCGTTACAACAGCCGCAGTGGCAAGAGGTATTGCATTGTCTGAA
GTTTGATCGCGGCAGTATCAGAGCCGGAAACGCTGGGTACGAACCCGCAG
ACAGGTTCAGCTCATCGAGTAGATATGGAGTCCCCGTGCCGCATTCAGAG
ACAAATCCCAAGATCTACATATGATAGCAACCAGGGATATCGGTTCTAGC
ACCCATCAAACGCCCCATCCCTCCGTACCGGCTGGTTGTCGCTGCCAACG
TGCGATGTGGTGCATCAAATCAGATTCGCAACGAGGTTGTGGGCAAGGAG
CCGTTCGAGGTGGAGCTGGAGGCGGGATCATTTTACTGGGGAGATCACTT
GGCGAACCCGATTGTACACAAGGTGAAACGGGCATTCTGTGTTTAGAATG
CTTGTTCGTCTCTTCCTTGTTAGACGGTGGTGCTAACTTTCTGCACGATG
TGAAAGGTGAAATAGTGCGGTCTTGAGCTTCTCTTTATGCCTTCCGTTGT
TGGATGTATGTGGGGTACTCCTTTATCGTTTCGGTGCACTTTGTGTATGT
GCCTTCACCCCCCCGCGGTACCGCGAAAGTTACTAACTGTAGTGCTGGTT
AAATGCAGTGTCCCATTTCCCTGGGCAGAAGGCCCGGCCTTCTTATATAA
TTTGATATAATACAATAGGAGATCTGCATTGCGTGTAGTATGTAGTACAA
CTTCTATGATATTCTGTTCTCAGCAGCCGACGGACCATTGAAAATAAGTC
AGAGAATTAAAGAAGGGACCTCCCACAAGAAACCGCGGTCATCTGTGTGA
TGAATTAACAATTCCATGCGGATAGTGATGCAATACTGGTCCGGCCGGGT
AAAACACCTAAAACAGGAAAAAAGTGAACCACCTCCCCTGCACAACTCTG
CCAGGTCAAACAGCATGTATTCCGGGGAGAAACCCACCGTATTGCTGTGG
CGTTTTCGTCTTGAATCATAGGTATAGTAGGAAAAACTTCTCTCTATCAG
GGTCTAAAGCAGATAGAAAGCTAAATTAGTCTAGAAGATAAAAATGCTGC
TCGCAGATCAACTACCGAACAGTCGTACATCCGTATGTAGACCTAAAAAA
CAACAAAAAAGGTACAATACTCGTCCCGAGTCGCCGAAGCAGAACGATCA
GCGCCTCCAGCAAGGAAGGGGAAGAGGACTGAGTCTTGACAGGAACGACG
AGATTGGTCATTCCCCAACCTCATCACGGATCTTCGGTCTTCAAACCACT
CTTGACCAATTGGTTGGTAAACGAAGGCCCAGGAGCGGGTGGGCGGTGGT
GTTGAGAGTGTGAAGTACGACAGCAGGGTTACCGGGATAAAGCACGTACT
ACTACAGCGAAAGCTTGCTCCACCTACATAAAACAAACAACCAAACTTGC
ACCACAGCCTGATCAGGACTTGAAGGTACGAAGGAGAGAGCGTCGGCTAG
AAACAAGTGCATCCCCCACTGCGTGTGTGTGTCGTGTCACAAATCTCCGG
AGAGCAGGAGTTCCTTTTAGGAGGCCGCCTTCGTCCGGTATGTCTGAGGA
TGACCACTGGGTTCCCCGAAGGTTGAAGTATCGCTGGTGTTTTGGGAAGA
CCAAGGTGCTGTCTTGGTCTCTCGGGCGATACATATGTATCGCGGCAAAA
CGGGAGAGAACTCACCAAGACAGGCACACACCCAACAACAGACAAATTGT
TTTAGTTTTAGTTTTTTCTGTGTTGACCTCGGCCTTCCATCCCCTGACTC
TTCCGTCTGACCCCCCTTAAGATATGCGTGGGCAAGCACGAGTTGGACTG
CATGGACGTGGAGTTCAAAGCAGGTCGGCCAAAGCCGGCGCGCCTCGGCC
CTGCTCTTCCGAACGACACCCCGAAGCGTGACTTGTGCTTCGAGAACCAT
GTGCTGAGGGCCTACCGTGTCAAGCTTGCTCCTGGGGAGAGCGTCGACGG
CGCTCTCGCTATTGAGGGCGGGGAGGGAAGCGAGTCGAAGGGGCTGGAGG
TTGGATTCGCCTACCTCGCCGTTGCTCTGAAGAGCGCAAGGCTGTCGAGG
GGGGGGGTTAAGGCTGGCGGCAACTGGTGGTGTGGTGGTGGGGTTCAAGA
CACATGGAGCAATGTTGGAGAGCAGGAGGCGGAGGCGATGATCCTGCAGC
CAAAGTAGATGGGGCTGCGGAGTTGTGTCGCTTTTCGTTCTCAAGGGGTC
AACAAGAGCTTCAAGGGCTGCAGCTGCAACTGCACAGGTGCCTGTTTGCG
GGGCTTCTTTCGGCCTGTGGTGGTGCTTTTAGCTGCCTGTGGCAGTGCTC
CGCGGAAATGGAAGCCACTTGTCCAACTTTGGTACACATTTAAGGGGACG
GGAAGGGATACCCATTGATCAGTATGCGCCTATTTCGAAGAATATCTCAT
ACCCCCGCTGAACATCACGGAGCCTCTCTTGAAGTTTGTGTGGGCGTTCC
AAAAACCTCCGCATGTTCTGACAGTCCTGACCAAAATCAGAGGTACTCTG
CGAATATCAGCCGTTTTTGCGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7088:2..2975-

>mRNA_L-elsbetiae_contig7088.15890.1 ID=mRNA_L-elsbetiae_contig7088.15890.1|Name=mRNA_L-elsbetiae_contig7088.15890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig7088:2..2975- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACAGCAGAGACCCCGGCGCTTCCCGTAGATGGACCAGCGGTACT
GGAATATGTCGAGGTCTACGACGAACCGCTGCACCCCACGGTATTCGAGA
ACAATTGTGTCAGAGTTCTGAAGGTGGACTGCCCTGTGAACCAAGACACG
ATGCTCCATCGGCATAGCCAAGACAGCTTCTTCCTCTTCTTTCGAACGGC
CAAGATGGCCACAGCAGAGACCCCGGCGCTTCCCGTAGATGGACCAGCGG
TACTGGAATATGTCGAGGTCTACGACGAACCGCTGCACCCCACGGTATTC
GAGAACAATTGTGTCAGAGTTCTGAAGGTGGACTGCCCTGTGAACCAAGA
CACGATGCTCCATCGGCATAGCCAAGACAGCTTCTTCCTCTTCTTTCGAA
CGGCCAAGATTCGCAACGAGGTTGTGGGCAAGGAGCCGTTCGAGGTGGAG
CTGGAGGCGGGATCATTTTACTGGGGAGATCACTTGGCGAACCCGATTGT
ACACAAGATTCGCAACGAGGTTGTGGGCAAGGAGCCGTTCGAGGTGGAGC
TGGAGGCGGGATCATTTTACTGGGGAGATCACTTGGCGAACCCGATTGTA
CACAAGATATGCGTGGGCAAGCACGAGTTGGACTGCATGGACGTGGAGTT
CAAAGCAGGTCGGCCAAAGCCGGCGCGCCTCGGCCCTGCTCTTCCGAACG
ACACCCCGAAGCGTGACTTGTGCTTCGAGAACCATGTGCTGAGGGCCTAC
CGTGTCAAGCTTGCTCCTGGGGAGAGCGTCGACGGCGCTCTCGCTATTGA
GGGCGGGGAGGGAAGCGAGTCGAAGGGGCTGGAGGTTGGATTCGCCTACC
TCGCCGTTGCTCTGAAGAGCGCAAGGCTGTCGAGGGGGGGGGTTAAGGCT
GGCGGCAACTGGTGGTGTGGTGGTGGGGTTCAAGACACATGGAGCAATGT
TGGAGAGCAGGAGGCGGAGGCGATGATCCTGCAGCCAAAGTAGATATGCG
TGGGCAAGCACGAGTTGGACTGCATGGACGTGGAGTTCAAAGCAGGTCGG
CCAAAGCCGGCGCGCCTCGGCCCTGCTCTTCCGAACGACACCCCGAAGCG
TGACTTGTGCTTCGAGAACCATGTGCTGAGGGCCTACCGTGTCAAGCTTG
CTCCTGGGGAGAGCGTCGACGGCGCTCTCGCTATTGAGGGCGGGGAGGGA
AGCGAGTCGAAGGGGCTGGAGGTTGGATTCGCCTACCTCGCCGTTGCTCT
GAAGAGCGCAAGGCTGTCGAGGGGGGGGGTTAAGGCTGGCGGCAACTGGT
GGTGTGGTGGTGGGGTTCAAGACACATGGAGCAATGTTGGAGAGCAGGAG
GCGGAGGCGATGATCCTGCAGCCAAAGTAG
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