mRNA_L-elsbetiae_contig7079.15883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7079.15883.1
Unique NamemRNA_L-elsbetiae_contig7079.15883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7079.15883.1 vs. uniprot
Match: A0A6H5L6R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.110e-16
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:   32 MYRGN--QSMGPRHG-HMTHGYMNTMGMQAPPPDGS-PLG-QGMMGRYGMQVPAGGPA 190
            MYRGN  QSMGPRHG HM  G+MN MGMQAPPPDGS PL  QGMMGRYGMQVPAGGPA
Sbjct:   46 MYRGNNNQSMGPRHGGHMNPGFMNNMGMQAPPPDGSSPLTHQGMMGRYGMQVPAGGPA 103
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BLAST of mRNA_L-elsbetiae_contig7079.15883.1 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.810e-16
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:   32 MYRGN-QSMGPRHG-HMTHGYMNTMGMQAPPPDGS-PLG-QGMMGRYGMQVPAGGPA 190
            MYRGN QSMGPRHG HM  G+MN MGMQAPPPDGS PL  QGMMGRYGMQVPAGGPA
Sbjct:  334 MYRGNNQSMGPRHGGHMNPGFMNNMGMQAPPPDGSSPLTHQGMMGRYGMQVPAGGPA 390
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7079.15883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6R2_9PHAE1.110e-1682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVL9_ECTSI2.810e-1684.21Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7079contigL-elsbetiae_contig7079:411..1895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue4.7e-14
Seed eggNOG ortholog2880.D7FVL9
KEGG koko:K13208
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03041
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-01_009360.2
Exons3
Model size343
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7079.15883.1prot_L-elsbetiae_contig7079.15883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7079 442..1895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.383352-UTR-L-elsbetiae_contig7079:410..4411622816785.383352-UTR-L-elsbetiae_contig7079:410..441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7079 411..441 +
1691683811.627892-UTR-L-elsbetiae_contig7079:410..4411691683811.627892-UTR-L-elsbetiae_contig7079:410..441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7079 411..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.3985984-CDS-L-elsbetiae_contig7079:441..4591622816785.3985984-CDS-L-elsbetiae_contig7079:441..459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 442..459 +
1691683811.6393986-CDS-L-elsbetiae_contig7079:441..4591691683811.6393986-CDS-L-elsbetiae_contig7079:441..459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 442..459 +
1622816785.4121213-CDS-L-elsbetiae_contig7079:1138..12311622816785.4121213-CDS-L-elsbetiae_contig7079:1138..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 1139..1231 +
1691683811.6517367-CDS-L-elsbetiae_contig7079:1138..12311691683811.6517367-CDS-L-elsbetiae_contig7079:1138..1231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 1139..1231 +
1622816785.4236555-CDS-L-elsbetiae_contig7079:1694..18951622816785.4236555-CDS-L-elsbetiae_contig7079:1694..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 1695..1895 +
1691683811.6691718-CDS-L-elsbetiae_contig7079:1694..18951691683811.6691718-CDS-L-elsbetiae_contig7079:1694..1895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7079 1695..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7079.15883.1

>prot_L-elsbetiae_contig7079.15883.1 ID=prot_L-elsbetiae_contig7079.15883.1|Name=mRNA_L-elsbetiae_contig7079.15883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MYRGNQSMGPRHGHMTHGYMNTMGMQAPPPDGSPLGQGMMGRYGMQVPAG
GPAAAVAAQHAAAYHAAAAQHQQQQQQVPPGGYGMMHLNNTMGMMNIAGG
GVGA
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mRNA from alignment at L-elsbetiae_contig7079:411..1895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7079.15883.1 ID=mRNA_L-elsbetiae_contig7079.15883.1|Name=mRNA_L-elsbetiae_contig7079.15883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1485bp|location=Sequence derived from alignment at L-elsbetiae_contig7079:411..1895+ (Laminarionema elsbetiae ELsaHSoW15)
TGGAGGTGGCGGTGGCGGCGGCGGCGGCGGAATGTACCGGGGTAACCAGG
TAAAAACAACGCGGGCGGTTGCTGTGGGTACATACTTAGTGTGGTCGTAG
TGTGGTCCCATCCTGTGTTTTGGTATTTACAACTCATGGTGCACTCTGAT
CACCATGAAGTAAGACCTCCATACTTGCCGAAAGTGCAGTGCTGAAGCTA
AACCAGACAGCCTAGATCGTTTCGTTCGAGACATAGGATAGCCCTGCTGT
GTGTTGCGTCTTGGAAATCCCGGGGGCAGGCAGATAAATAGAAGAGATAC
CTCTATGTTCACATCGAACCCCAGAAGCATAAAAATAAAAGGCTTGACTC
ACCTTACTTGGGGTGTGGTGCGCGCAACCCCTCTGACCTGCTGTCGAAGC
GCCGCAACGTAGTGCAGATACATGGCGTTTGTTTGTCGACCTTTCTGCTC
CGTAGTCCCCTGTACCATACCAGTATTTGTTTTTTTCTTCAAAAAAACAA
GATTTTTCGCACTTCTGTCGACTTAATTAAAACTCCGACTCTCGCGTTAT
TAAGGCCGTGCAGTTCTCGAGGAGACCAATTACTTAGAACCCGTTTAGCT
TGACATATTCTCGGGCTCGTAAATACACACCTGTTCGATGTCGTGCTTGC
TCTGTGTCGTTGGTGCATCAATCCTAAATTGCTCACCGCGCGACATCGTT
CGTCCTTCCTCCGTTCCCGGGCCGGCAGAGTATGGGCCCGCGACACGGGC
ACATGACCCATGGCTACATGAACACCATGGGCATGCAGGCGCCGCCACCG
GACGGTTCGCCACTCGGCCAGGTGTGTTCTAGCTGCCCGTGCCTTGTTCT
GCCTTGTTGTGCTGTGATTGCGAAGATCGCGCCTGTTCCTTGACTCGTTC
AGTTGCTTGCCCTGGGACTAGGAGACGCACAATGAGACATGGAACGTGAT
TTACAACTTCAGGGCTCATCCTCGTTCGGTTTCATTTGTTTGCGTGCGTT
AATTGTTTGCGGGTGAGTGGAGTTCAAGAAGGAGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGAACTTCACCGTCGTTACCGGCGTG
GCGTGCATCCTTCCTCGCCTCGACCTATATCTGTTCATATTTGATACACT
GCAAAGTAGTCGATCTATCGCACTCAGTTGACGAGGCAAACTGGACACCG
GCGCACCCTCACCACCAGCCACCCCCACACGTACGTGCGCTCTCCCACAC
GAACACACACGCGCGCGCGCGCACACACACACAGGGCATGATGGGGCGCT
ACGGTATGCAGGTCCCCGCCGGGGGCCCCGCGGCAGCGGTGGCAGCCCAG
CACGCGGCGGCCTACCACGCCGCGGCCGCGCAGCACCAGCAGCAGCAACA
GCAAGTGCCTCCGGGGGGCTACGGCATGATGCACCTCAACAACACCATGG
GTATGATGAACATCGCCGGCGGAGGCGTCGGCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7079:411..1895+

>mRNA_L-elsbetiae_contig7079.15883.1 ID=mRNA_L-elsbetiae_contig7079.15883.1|Name=mRNA_L-elsbetiae_contig7079.15883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig7079:411..1895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCGGGGTAACCAGATGTACCGGGGTAACCAGAGTATGGGCCCGCG
ACACGGGCACATGACCCATGGCTACATGAACACCATGGGCATGCAGGCGC
CGCCACCGGACGGTTCGCCACTCGGCCAGAGTATGGGCCCGCGACACGGG
CACATGACCCATGGCTACATGAACACCATGGGCATGCAGGCGCCGCCACC
GGACGGTTCGCCACTCGGCCAGGGCATGATGGGGCGCTACGGTATGCAGG
TCCCCGCCGGGGGCCCCGCGGCAGCGGTGGCAGCCCAGCACGCGGCGGCC
TACCACGCCGCGGCCGCGCAGCACCAGCAGCAGCAACAGCAAGTGCCTCC
GGGGGGCTACGGCATGATGCACCTCAACAACACCATGGGTATGATGAACA
TCGCCGGCGGAGGCGTCGGCGCGGGCATGATGGGGCGCTACGGTATGCAG
GTCCCCGCCGGGGGCCCCGCGGCAGCGGTGGCAGCCCAGCACGCGGCGGC
CTACCACGCCGCGGCCGCGCAGCACCAGCAGCAGCAACAGCAAGTGCCTC
CGGGGGGCTACGGCATGATGCACCTCAACAACACCATGGGTATGATGAAC
ATCGCCGGCGGAGGCGTCGGCGCG
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