mRNA_L-elsbetiae_contig7076.15881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7076.15881.1
Unique NamemRNA_L-elsbetiae_contig7076.15881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7076.15881.1 vs. uniprot
Match: A0A6H5KW90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW90_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.190e-69
Identity = 115/178 (64.61%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:    1 RESCVILANKSDFKVSYWVEQECKMKTRAIQETVVTTMQTKLNGKAKLD--------------AREGGMLAGLVTGEGGGGVDVRAAKRAKTETSVSTEQTEMVSYFLMKDHRIEPGRGTPRTTVCFPEDCKHLRVYGFFQAKDG-TWKPYKDKVYSLNGRKKQFTLTALNVNIKPYV 489
            R+SC+ +AN SD+KVSYWVEQECKMKTRA+QETVV+TM TKLNGKAK+                                G +VRAAKRAKTE +V TE+TE VSYFLMKDHR+EP RGTP TTV FPE CK+LRVY FFQAKDG TWK YKDKVYS+NGRK+++TLTALNVNIKPY+
Sbjct:   14 RDSCINVANNSDYKVSYWVEQECKMKTRAVQETVVSTMDTKLNGKAKIGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAEVRAAKRAKTEKTVCTEKTE-VSYFLMKDHRMEPRRGTPPTTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSINGRKREYTLTALNVNIKPYI 190
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BLAST of mRNA_L-elsbetiae_contig7076.15881.1 vs. uniprot
Match: D8LS15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS15_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 4.050e-49
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:  175 LVTGEGGG--GVDVRAAKRAKTETSVSTEQTEMVSYFLMKDHRIEPGRGTPRTTVCFPEDCKHLRVYGFFQAKDG-TWKPYKDKVYSLNGRKKQFTLTALNVNIKPYV 489
            ++ G GGG  G +VRAAKRAKTE +V TE+TEMVSYFLMKDHR+EP RGTP TTV FPE CK+LRVY FFQAKDG TWK YKDKVYS+NGRK+++TLTALN NIKPY+
Sbjct:    1 MMGGGGGGWPGAEVRAAKRAKTEKTVCTEKTEMVSYFLMKDHRMEPRRGTPPTTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSVNGRKREYTLTALNANIKPYI 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7076.15881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW90_9PHAE3.190e-6964.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS15_ECTSI4.050e-4975.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7076contigL-elsbetiae_contig7076:8402..10157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001760.1
Exons4
Model size627
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7076.15881.1prot_L-elsbetiae_contig7076.15881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7076 8963..10022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.2007506-UTR-L-elsbetiae_contig7076:8401..84641622816785.2007506-UTR-L-elsbetiae_contig7076:8401..8464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 8402..8464 +
1691683811.5000734-UTR-L-elsbetiae_contig7076:8401..84641691683811.5000734-UTR-L-elsbetiae_contig7076:8401..8464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 8402..8464 +
1622816785.2184684-UTR-L-elsbetiae_contig7076:8953..89621622816785.2184684-UTR-L-elsbetiae_contig7076:8953..8962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 8954..8962 +
1691683811.5120218-UTR-L-elsbetiae_contig7076:8953..89621691683811.5120218-UTR-L-elsbetiae_contig7076:8953..8962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 8954..8962 +
1622816785.2682018-UTR-L-elsbetiae_contig7076:10022..101571622816785.2682018-UTR-L-elsbetiae_contig7076:10022..10157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 10023..10157 +
1691683811.5507267-UTR-L-elsbetiae_contig7076:10022..101571691683811.5507267-UTR-L-elsbetiae_contig7076:10022..10157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7076 10023..10157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.2315137-CDS-L-elsbetiae_contig7076:8962..91861622816785.2315137-CDS-L-elsbetiae_contig7076:8962..9186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 8963..9186 +
1691683811.5212803-CDS-L-elsbetiae_contig7076:8962..91861691683811.5212803-CDS-L-elsbetiae_contig7076:8962..9186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 8963..9186 +
1622816785.243955-CDS-L-elsbetiae_contig7076:9553..96381622816785.243955-CDS-L-elsbetiae_contig7076:9553..9638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 9554..9638 +
1691683811.5307293-CDS-L-elsbetiae_contig7076:9553..96381691683811.5307293-CDS-L-elsbetiae_contig7076:9553..9638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 9554..9638 +
1622816785.2580795-CDS-L-elsbetiae_contig7076:9911..100221622816785.2580795-CDS-L-elsbetiae_contig7076:9911..10022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 9912..10022 +
1691683811.540418-CDS-L-elsbetiae_contig7076:9911..100221691683811.540418-CDS-L-elsbetiae_contig7076:9911..10022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7076 9912..10022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7076.15881.1

>prot_L-elsbetiae_contig7076.15881.1 ID=prot_L-elsbetiae_contig7076.15881.1|Name=mRNA_L-elsbetiae_contig7076.15881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MKTRAIQETVVTTMQTKLNGKAKLDAREGGMLAGLVTGEGGGGVDVRAAK
RAKTETSVSTEQTEMVSYFLMKDHRIEPGRGTPRTTVCFPEDCKHLRVYG
FFQAKDGTWKPYKDKVYSLNGRKKQFTLTALNVNIKPYV*
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mRNA from alignment at L-elsbetiae_contig7076:8402..10157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7076.15881.1 ID=mRNA_L-elsbetiae_contig7076.15881.1|Name=mRNA_L-elsbetiae_contig7076.15881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1756bp|location=Sequence derived from alignment at L-elsbetiae_contig7076:8402..10157+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAATCGTGCGTGATTTTGGCCAACAAGAGCGACTTTAAGGTTTCCTA
CTGGGTGGAACAGGTTAGTTGTTGCCTTACGGTCTTGTGCAGACGAACAC
AGAGCATACAGCAGCAGCAGCAGTACCGTAGGTGACACAAGATACCACAC
CCCCTGGATCGAATTTCAGAGCTCGATTACTCCGTAACGAAGAAGGTGCC
AGCTCCAAACAACACATTTTCGGACAGCCCTCGACTAGATCTTTCCAACA
CCACCCCTTTCGGCACTGTCATTCTTCTCGCTGGGGAGGAATCGAGCTTT
GAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTAGGTAGTTTTGT
CGGGGGTGTTCTAATGGTCTGCATGTCAGCATGCCGTGTAGTCTTTCGAC
CGTAGAAATAGCGGTGTTACCCCCAAGCAGTATGTTTTAGGGTGGGGTCA
AGCTGAGCGTGGTGTACGGGGTGCTGTAGTAACTACCCAAGGAGCGGGGA
TCACCTCCTCATCCGCGCGGCCGACGACGTTACTTCTTGGGGGATTGAAC
AGGAATGCAAAATGAAGACTCGAGCAATCCAGGAGACGGTCGTAACCACG
ATGCAAACCAAGCTGAACGGGAAGGCAAAACTGGATGCTAGGGAAGGGGG
AATGCTTGCGGGGTTGGTAACTGGAGAAGGCGGCGGGGGGGTGGACGTAC
GAGCAGCGAAGAGGGCGAAGACGGAAACATCCGTCTCCACCGAGCAGACC
GAGATGGTTTCGTACTTCTTGATGAAAGACCACAGGTGTGTAGGGGCGAA
GAGCCTGGCGCATGTCCTTAGCGATGCACTCGTCCAAAGACGCCGGCCAA
CAAAATGCTTCGTGCTTGCAGATAGAGAGTCAGAGTCAGAGAGTAGATGA
AGAGAGAGAGAGAGGGAGATTCACAAGGGAGCACTTTCTCGCTTAAGTCG
CTAAGTCTGCTGATGCTTTTTGTCGAGCTTCGAGGTATCAACACAGCAAC
CCCTTTTATTTTGCTGTGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGA
TGGTGCTGCTGATGGTCCCTAATTTGAGGATGCTGAAATCGTTGGTGCGG
CATGTTCTCTGTACGTACGTTCCTCCTGCCAATACTTGAATGCCGCAACC
AGGATAGAACCAGGGCGAGGAACGCCTCGAACGACGGTGTGTTTCCCGGA
GGACTGCAAGCACCTCCGAGTGTACGGTTTTTTCCAGGTTTGTGCGTGTG
CCTCGCGGTTTCATTGGCATTGGTAGTGTTGACCCACTTCGCCACTACTG
TACCACTCCTTGGCTCCACACGCAGCGTATGCAGTGGTGTGTAGCCGGCC
TGGTCGATGAAAAGCTTTGCGTGATCAGCCCTGATTTTTAAAGGGGTTCG
AGGGCCCATGGTAGTGCGCCATGGTGTGATACTGAGCGCAGCCCCCCGTA
CCCCCCCCTCGTTGCCAATGATCTCCCGTGAAAATCATCTTCTCCTTTCT
GTTTTTGCAGGCAAAAGACGGCACGTGGAAGCCTTACAAAGACAAGGTCT
ACTCGCTCAACGGACGAAAAAAACAGTTCACGCTCACCGCCCTGAACGTC
AACATCAAGCCATATGTGTAGCTAGGACTCGTCCGTGAAGTAATGCTATC
TATCTACCAGGTTGTTGGTGTATTTGTGGTCGCCATGATAACCCCGGCGC
GCTGTTGAACGGCCGCCGCTGGTAATTTATATCGCCAGGTCATTCCTTTT
TACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7076:8402..10157+

>mRNA_L-elsbetiae_contig7076.15881.1 ID=mRNA_L-elsbetiae_contig7076.15881.1|Name=mRNA_L-elsbetiae_contig7076.15881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig7076:8402..10157+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACTCGAGCAATCCAGGAGACGGTCGTAACCACGATGCAAACCAA
GCTGAACGGGAAGGCAAAACTGGATGCTAGGGAAGGGGGAATGCTTGCGG
GGTTGGTAACTGGAGAAGGCGGCGGGGGGGTGGACGTACGAGCAGCGAAG
AGGGCGAAGACGGAAACATCCGTCTCCACCGAGCAGACCGAGATGGTTTC
GTACTTCTTGATGAAAGACCACAGATGAAGACTCGAGCAATCCAGGAGAC
GGTCGTAACCACGATGCAAACCAAGCTGAACGGGAAGGCAAAACTGGATG
CTAGGGAAGGGGGAATGCTTGCGGGGTTGGTAACTGGAGAAGGCGGCGGG
GGGGTGGACGTACGAGCAGCGAAGAGGGCGAAGACGGAAACATCCGTCTC
CACCGAGCAGACCGAGATGGTTTCGTACTTCTTGATGAAAGACCACAGGA
TAGAACCAGGGCGAGGAACGCCTCGAACGACGGTGTGTTTCCCGGAGGAC
TGCAAGCACCTCCGAGTGTACGGTTTTTTCCAGGATAGAACCAGGGCGAG
GAACGCCTCGAACGACGGTGTGTTTCCCGGAGGACTGCAAGCACCTCCGA
GTGTACGGTTTTTTCCAGGCAAAAGACGGCACGTGGAAGCCTTACAAAGA
CAAGGTCTACTCGCTCAACGGACGAAAAAAACAGTTCACGCTCACCGCCC
TGAACGTCAACATCAAGCCATATGTGTAGGCAAAAGACGGCACGTGGAAG
CCTTACAAAGACAAGGTCTACTCGCTCAACGGACGAAAAAAACAGTTCAC
GCTCACCGCCCTGAACGTCAACATCAAGCCATATGTGTAG
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