mRNA_L-elsbetiae_contig11841.1588.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11841.1588.1
Unique NamemRNA_L-elsbetiae_contig11841.1588.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: D7FPE7_ECTSI (Intraflagellar transport protein 74 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.230e-45
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            +KQYR RVEAMRGQVQQLTARHE CKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVK+LN
Sbjct:   85 RKQYRWRVEAMRGQVQQLTARHEACKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKDLN 167
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A6H5JU35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU35_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.320e-45
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            +KQYR RVEAMRGQVQQLTARHE CKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGR++DFQSLRGECMGMVK+LN
Sbjct:   30 RKQYRWRVEAMRGQVQQLTARHEACKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGRDLDFQSLRGECMGMVKDLN 112
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A836CBQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.980e-21
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            K+QY  R E MR Q+  + A  E  K+E A SE G+ LE LE+K+R YETNIF L+EFVETKGREIDF+ +R +C  +V++LN
Sbjct:   32 KEQYMRRREGMRAQLSAMAASCEAAKREAAMSEVGRELENLEQKLRAYETNIFSLREFVETKGREIDFEPIRADCAQVVRQLN 114
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A662XXK3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXK3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.620e-16
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KKQY GR +AMR QV  L+ + ET  +E+AAS+T K L+ALE+K+R +E NIF LKE++++K RE+D+  L+ +C   ++ELN
Sbjct:  537 KKQYIGRRDAMRQQVTALSGQLETLAQEIAASDTAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYDHLKQDCFRTLQELN 619
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A0P1B0N8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0N8_PLAHL)

HSP 1 Score: 81.6 bits (200), Expect = 2.950e-16
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KKQY GR +AMR Q+  L+A+ E  K E+A  ET K L+ALE+K+R +E NIF LKE++++K RE+D++  + EC+  ++ELN
Sbjct:  431 KKQYIGRRDAMRQQITALSAQVENVKHEIAQQETAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYEHTKQECLRTLQELN 513
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A6A3W1G4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W1G4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.090e-16
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 KQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KQY GR +AMR QV  LT + E   +E AA ET K L+ALE+K+R +E NIF LKE++++K RE+D++ L+ +C   +++LN
Sbjct:  100 KQYIGRRDAMRQQVTALTTQLENLVQETAAQETAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYEHLKQDCFRTLQDLN 181
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A7S2C280_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C280_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.120e-15
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   10 YRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            Y+ R +  + QV+ L+A +E+ KK+L ASET   LE+LE+K+RTY  NIF L+E+VETKGRE DF+SL+  C+ +   LN
Sbjct:  288 YQKRTKTSKEQVKGLSASYESAKKQLEASETHTRLESLEKKLRTYAQNIFTLQEYVETKGRETDFESLKNNCVNICGNLN 367
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A662WLW1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLW1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.760e-15
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KKQY  R +AMR QV  L+ + ET  +E+AAS+T K L+ALE+K+R +E NIF LKE++++K RE+D+  L+ +C   +++LN
Sbjct: 1304 KKQYISRRDAMRQQVTALSGQLETLAQEIAASDTAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYDHLKQDCFRTLQDLN 1386
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BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: D0NIV2_PHYIT (Intraflagellar Transport Protein 72/74 n=9 Tax=Phytophthora TaxID=4783 RepID=D0NIV2_PHYIT)

HSP 1 Score: 77.0 bits (188), Expect = 1.280e-14
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KKQY GR +AMR QV  L+ + E    E A  ET K L+ALE+K+R +E NIF LKE++++K RE+D++ L+ +C   ++ELN
Sbjct:  555 KKQYIGRRDAMRQQVTSLSTQLENLVHETAQQETAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYEHLKQDCFRTLQELN 637
[Close]
BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Match: A0A6A3K1M9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K1M9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.590e-14
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 KKQYRGRVEAMRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVETKGREIDFQSLRGECMGMVKELN 249
            KKQY  R +AMR QV  LT + E   +E AA ET K L+ALE+K+R +E NIF LKE++++K RE+D++ L+ +C   +++L+
Sbjct:  169 KKQYISRRDAMRQQVTALTTQLENLVQETAAQETAKNLDALEQKLRHHEQNIFHLKEYIDSKSREVDYEHLKQDCFRTLQDLS 251
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11841.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPE7_ECTSI1.230e-4595.18Intraflagellar transport protein 74 n=1 Tax=Ectoca... [more]
A0A6H5JU35_9PHAE1.320e-4592.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBQ5_9STRA5.980e-2155.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XXK3_9STRA1.620e-1650.60Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0P1B0N8_PLAHL2.950e-1649.40Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A6A3W1G4_9STRA5.090e-1648.78Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A7S2C280_9STRA1.120e-1551.25Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A662WLW1_9STRA2.760e-1548.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D0NIV2_PHYIT1.280e-1448.19Intraflagellar Transport Protein 72/74 n=9 Tax=Phy... [more]
A0A6A3K1M9_9STRA1.590e-1446.99Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11841contigL-elsbetiae_contig11841:1978..2945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog157072.XP_008875377.1
Preferred nameIFT74
KEGG koko:K19679
Hectar predicted targeting categoryother localisation
GOsGO:0002064,GO:0003334,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008092,GO:0008150,GO:0008285,GO:0008544,GO:0009799,GO:0009855,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030155,GO:0030216,GO:0030705,GO:0030855,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032991,GO:0033628,GO:0033630,GO:0035735,GO:0042073,GO:0042127,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043588,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045785,GO:0045893,GO:0045935,GO:0045944,GO:0046907,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060271,GO:0060429,GO:0065007,GO:0070925,GO:0071840,GO:0072359,GO:0080090,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902680,GO:1903506,GO:1903508,GO:1905515,GO:2000112,GO:2001141
EggNOG free text desc.beta-tubulin binding
EggNOG OGs28JR0@1,2QS4E@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size249
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11841.1588.1prot_L-elsbetiae_contig11841.1588.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11841 2008..2945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.7081034-UTR-L-elsbetiae_contig11841:1977..20071622815386.7081034-UTR-L-elsbetiae_contig11841:1977..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11841 1978..2007 +
1691682872.9934769-UTR-L-elsbetiae_contig11841:1977..20071691682872.9934769-UTR-L-elsbetiae_contig11841:1977..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11841 1978..2007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.7190423-CDS-L-elsbetiae_contig11841:2007..20791622815386.7190423-CDS-L-elsbetiae_contig11841:2007..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11841 2008..2079 +
1691682873.0059955-CDS-L-elsbetiae_contig11841:2007..20791691682873.0059955-CDS-L-elsbetiae_contig11841:2007..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11841 2008..2079 +
1622815386.7540238-CDS-L-elsbetiae_contig11841:2798..29451622815386.7540238-CDS-L-elsbetiae_contig11841:2798..2945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11841 2799..2945 +
1691682873.0152442-CDS-L-elsbetiae_contig11841:2798..29451691682873.0152442-CDS-L-elsbetiae_contig11841:2798..2945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11841 2799..2945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11841.1588.1

>prot_L-elsbetiae_contig11841.1588.1 ID=prot_L-elsbetiae_contig11841.1588.1|Name=mRNA_L-elsbetiae_contig11841.1588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MRGQVQQLTARHETCKKELAASETGKTLEALERKMRTYETNIFFLKEFVE
TKGREIDFQSLRGECMGMVKELN
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mRNA from alignment at L-elsbetiae_contig11841:1978..2945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11841.1588.1 ID=mRNA_L-elsbetiae_contig11841.1588.1|Name=mRNA_L-elsbetiae_contig11841.1588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=968bp|location=Sequence derived from alignment at L-elsbetiae_contig11841:1978..2945+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGCAGTACCGTGGGCGGGTCGAGGCCATGCGGGGGCAAGTCCAGCA
GCTCACCGCGAGGCACGAGACCTGCAAGAAGGAGCTCGCCGCCAGCGAGA
CGGTGAGCGAGTTTGTGTGTGATCAAATGTGGTCCGTGTGGTGTGATCTG
AGCGATAAATACCTATCTATAGAAAGGATGCACCGGCCGGTCGGTCGGAT
GCCTCGCCTCAAGGGGCCCACGAGATAGGAAACGCATACGGGAGGTGGAG
GTCAATTTCATGTGTAGGCTGTACCAAGCGAGCAAACTCCCCCTAGACCA
TGAAGAACCTGCTGCGTGTTTGTTTCAGAACCTGAACTTCACCCCGAAGA
AAGACAGGTAGTAAACTGCGATTGGGAGCACGAAAACGGGGTTGCATTGG
GTCCCCTGCCTGCCTGCCTATGTTTTGGTATGTTCTTCGCCTCCGTTTTG
TTTCGAAGGCGCACGGAGGGTGCTAAAAGGTTGGTTAAAAGGGTGTGGGC
ACTCGGGAAATATGCAGGAATCTCGGAACGAACGCTTTTGTACGGCGGGG
AATAAACATATACTCATGACCAGCATCATGCATGCCGCATGTAGTCGTTA
GACCGTAGCATACACCTTGCACCTCGTCAGAGCCGTGGCGCTATGTAGCG
TATACATACATACCTACATATCGACCTTTTCAGCGGACACACTCTCGCGC
AGCATCGAGCGCGAAGCGATGTGAGGCGTTCGTTTCAAATCAATGTGTCT
CTTGATGCGTGCGAGAGCGAACCGAAAAGCACCCCCCCCCGTGTATGCAT
GCATGCATGTACAAACCTCAGGGGAAAACTCTGGAAGCCCTGGAGAGGAA
AATGCGCACGTACGAGACGAATATCTTCTTCCTGAAAGAGTTCGTAGAGA
CAAAGGGGCGGGAGATCGACTTCCAGAGCCTCAGGGGGGAGTGCATGGGT
ATGGTGAAGGAGCTTAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11841:1978..2945+

>mRNA_L-elsbetiae_contig11841.1588.1 ID=mRNA_L-elsbetiae_contig11841.1588.1|Name=mRNA_L-elsbetiae_contig11841.1588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig11841:1978..2945+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGGGCAAGTCCAGCAGCTCACCGCGAGGCACGAGACCTGCAAGAA
GGAGCTCGCCGCCAGCGAGACGATGCGGGGGCAAGTCCAGCAGCTCACCG
CGAGGCACGAGACCTGCAAGAAGGAGCTCGCCGCCAGCGAGACGGGGAAA
ACTCTGGAAGCCCTGGAGAGGAAAATGCGCACGTACGAGACGAATATCTT
CTTCCTGAAAGAGTTCGTAGAGACAAAGGGGCGGGAGATCGACTTCCAGA
GCCTCAGGGGGGAGTGCATGGGTATGGTGAAGGAGCTTAACGGGAAAACT
CTGGAAGCCCTGGAGAGGAAAATGCGCACGTACGAGACGAATATCTTCTT
CCTGAAAGAGTTCGTAGAGACAAAGGGGCGGGAGATCGACTTCCAGAGCC
TCAGGGGGGAGTGCATGGGTATGGTGAAGGAGCTTAAC
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