mRNA_L-elsbetiae_contig7071.15877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7071.15877.1
Unique NamemRNA_L-elsbetiae_contig7071.15877.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7071.15877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7071contigL-elsbetiae_contig7071:2504..4572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size844
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7071.15877.1prot_L-elsbetiae_contig7071.15877.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7071 2825..4511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.9354506-UTR-L-elsbetiae_contig7071:2503..28241622816784.9354506-UTR-L-elsbetiae_contig7071:2503..2824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7071 2504..2824 -
1691683811.308858-UTR-L-elsbetiae_contig7071:2503..28241691683811.308858-UTR-L-elsbetiae_contig7071:2503..2824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7071 2504..2824 -
1622816784.9676523-UTR-L-elsbetiae_contig7071:4511..45721622816784.9676523-UTR-L-elsbetiae_contig7071:4511..4572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7071 4512..4572 -
1691683811.347379-UTR-L-elsbetiae_contig7071:4511..45721691683811.347379-UTR-L-elsbetiae_contig7071:4511..4572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7071 4512..4572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.9461803-CDS-L-elsbetiae_contig7071:2824..30461622816784.9461803-CDS-L-elsbetiae_contig7071:2824..3046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7071 2825..3046 -
1691683811.3223922-CDS-L-elsbetiae_contig7071:2824..30461691683811.3223922-CDS-L-elsbetiae_contig7071:2824..3046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7071 2825..3046 -
1622816784.9576087-CDS-L-elsbetiae_contig7071:4271..45111622816784.9576087-CDS-L-elsbetiae_contig7071:4271..4511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7071 4272..4511 -
1691683811.3325415-CDS-L-elsbetiae_contig7071:4271..45111691683811.3325415-CDS-L-elsbetiae_contig7071:4271..4511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7071 4272..4511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7071.15877.1

>prot_L-elsbetiae_contig7071.15877.1 ID=prot_L-elsbetiae_contig7071.15877.1|Name=mRNA_L-elsbetiae_contig7071.15877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MEEEEDEVAVEGAGPASLLGSVVGVGSKRAREEDDDVSSVGLLQQAIAAE
ELARIPTQETQGAAPAKRRTLVTDISTETQIKARMATLNSLLQHMEHVKS
YSDPIQEMIHQTGRGEVAEALRLCRLEPDTYAEEVKNMVYLQEGLKSPLT
LTR*
back to top

mRNA from alignment at L-elsbetiae_contig7071:2504..4572-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7071.15877.1 ID=mRNA_L-elsbetiae_contig7071.15877.1|Name=mRNA_L-elsbetiae_contig7071.15877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2069bp|location=Sequence derived from alignment at L-elsbetiae_contig7071:2504..4572- (Laminarionema elsbetiae ELsaHSoW15)
CGACCACGGCGGGCTTCGCTGCACCAGCGATTTGGTCATATTTCCCCTGT
GCGACGACGACATGGAGGAGGAAGAGGACGAGGTCGCGGTCGAGGGCGCT
GGTCCGGCCTCGCTGCTGGGGTCGGTTGTGGGTGTAGGCTCCAAGCGTGC
GCGGGAAGAAGACGACGACGTCTCGTCGGTGGGCCTGCTTCAGCAGGCGA
TCGCGGCGGAGGAACTTGCTCGCATCCCGACACAGGAGACCCAGGGAGCA
GCGCCCGCCAAGAGGAGAACGCTGGTGACCGACATCTCCACCGAGACCCA
GGTGAGCGTGCTGAGATCACGTCTTTGTTGCGGCCCACCGGTTCCCTTCC
CCCCCCCCCCCCCCGCCTTCCCTGGCGGTCACCTCACATGAGTCACAGGC
TTCACTCGACTATCTGTCCTCTCACATCACATATATCCGCGGGCCGTTGA
AATTTTTGTTTTAGTTTTGGCCGGGATCCTCCGGAGGGCGCGTTCGTTGG
TGCGTCTGTGCCTTCGGGGATTTATTTCGGGGGGGCGTCGGATTGCTGTA
CTGTGTGTATGTTTGAGCGGTGGGCCCGCTTCGTAGCTCCCTCCCTTCAC
CTTTCACACCCCCCTTATTTTCTGCGCTCCCGAAAAGAAGAAAAAAAAAA
ACATCGTTGACACTTCCTGTTTGATGCCCTCTTGGCGCACATACATGCAT
GTCACATGCGCTACCTACCTGCGTTTCGTACTCTTATCTGTCTACTGGTT
TATTCTTTGGTTTCACGGCGGAGTCACTGCGGACATCCCTGCTCTCCCCC
CTCCCTTTCCATGACCTTTTTTTGAATGCCTATGGTGTTTGTGATCCGAA
AAGATGTCACATCCGCGTGAAGGGTGGCTTTTCGTGTGGGAGCGCAACGC
TCGTCACGAAGGTTGTCGTTCTCCCTCCGGGCATTGTCAGTGGACGATAT
GTAAAGGGGCTGTTGGTCTTACACTCGTCACAGCACCTCGGGGCCATTTC
ATGCCCGAGGTTTGCGTTCCTGCGAGCTGGCTCCTACTGAGTGGCTCAGT
TGCAGTTTTGATCACATTTCACACGGGGTAACTTTTCGGATACGGATCCC
GATCACGCGGTGGTCTCTCTCCCACTTGCCACTCACACATCCCCGCAAAT
GCGGTCACATCAGGCGCTGTTGGCGTGTCACATACTGCTTTTCTGTCAGA
TGGTTTCCACGGGAGTTCCGTCTCAGGATGGATTTACAAGGCGTCTCACG
ATATATAAATTTTTATTTTTATTTTTATTTTATTTTTTTCTGTCACGATC
TCGGACATGGTCACGGAATGATTTCCATTTTCCTGCCGCGTGGAGTTATC
TCACATCTCGCACGGGCCGCGGCTCTCACATCCCACCTCACACACGGGTT
TTAAGTTGCGTTCCCGCGCTGTCACTGTTGTGTATGTATATGGAACCCCC
TTCTCACTTGGGGCCGCCTCGCGTTATGGGCTCTGCTGTTCTCTGCCGGT
TTCGGAACCGTGATCACTTGTTACAGATCAAGGCTAGGATGGCCACGCTC
AATTCCCTCCTCCAGCACATGGAACATGTGAAGAGTTATTCCGACCCCAT
TCAGGAGATGATTCACCAGACGGGTAGGGGCGAAGTTGCGGAGGCCCTAC
GCCTCTGTAGGTTGGAACCAGACACCTACGCAGAGGAGGTGAAGAATATG
GTATACCTGCAGGAGGGTCTCAAAAGTCCCTTAACACTCACCAGGTAGTC
ATGGGGGTCCTTTGGTTGCGTGCACGCTTGCTTGAGACATGCCAAGACGG
CACTTCTGTTGATTTCAAACGGATGGGTGAAGAGTTCTATACTCTTAAGA
AGGCTGTCAGCCTTGGAAAACACGACCCCCAGCGTGGGGCGGGGCTTCAA
CCCGTAGCACTAACCCCGGCTTTTCAGGGGGCGGCGTTTGGGGGCCCCGT
AGGGATGCCTCACATGCCGGGTTTCGCAGCCCCTTCTTTCCAGCCGCCCC
AACCTCCGTTCGAGCCACCCGCTTTTAACAGCCACGGGTATGGAGGCCCG
CCGGGCGGGTTTCACAAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7071:2504..4572-

>mRNA_L-elsbetiae_contig7071.15877.1 ID=mRNA_L-elsbetiae_contig7071.15877.1|Name=mRNA_L-elsbetiae_contig7071.15877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig7071:2504..4572- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGGAAGAGGACGAGGTCGCGGTCGAGGGCGCTGGTCCGGCCTC
GCTGCTGGGGTCGGTTGTGGGTGTAGGCTCCAAGCGTGCGCGGGAAGAAG
ACGACGACGTCTCGTCGGTGGGCCTGCTTCAGCAGGCGATCGCGGCGGAG
GAACTTGCTCGCATCCCGACACAGGAGACCCAGGGAGCAGCGCCCGCCAA
GAGGAGAACGCTGGTGACCGACATCTCCACCGAGACCCAGATGGAGGAGG
AAGAGGACGAGGTCGCGGTCGAGGGCGCTGGTCCGGCCTCGCTGCTGGGG
TCGGTTGTGGGTGTAGGCTCCAAGCGTGCGCGGGAAGAAGACGACGACGT
CTCGTCGGTGGGCCTGCTTCAGCAGGCGATCGCGGCGGAGGAACTTGCTC
GCATCCCGACACAGGAGACCCAGGGAGCAGCGCCCGCCAAGAGGAGAACG
CTGGTGACCGACATCTCCACCGAGACCCAGATCAAGGCTAGGATGGCCAC
GCTCAATTCCCTCCTCCAGCACATGGAACATGTGAAGAGTTATTCCGACC
CCATTCAGGAGATGATTCACCAGACGGGTAGGGGCGAAGTTGCGGAGGCC
CTACGCCTCTGTAGGTTGGAACCAGACACCTACGCAGAGGAGGTGAAGAA
TATGGTATACCTGCAGGAGGGTCTCAAAAGTCCCTTAACACTCACCAGGT
AGATCAAGGCTAGGATGGCCACGCTCAATTCCCTCCTCCAGCACATGGAA
CATGTGAAGAGTTATTCCGACCCCATTCAGGAGATGATTCACCAGACGGG
TAGGGGCGAAGTTGCGGAGGCCCTACGCCTCTGTAGGTTGGAACCAGACA
CCTACGCAGAGGAGGTGAAGAATATGGTATACCTGCAGGAGGGTCTCAAA
AGTCCCTTAACACTCACCAGGTAG
back to top