mRNA_L-elsbetiae_contig707.15876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig707.15876.1
Unique NamemRNA_L-elsbetiae_contig707.15876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 1.330e-118
Identity = 224/350 (64.00%), Postives = 260/350 (74.29%), Query Frame = 1 
Query:   19 MVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNA-NAYTLP-WVGHPRSIASDSP-------AARDTFARTCQSRFLPSPFL---IDGDCCCVAGSGHERSAGGSRGRRSRPSPSVGALAAVGSAVDVSSSGGG-PAVVDEAAIGRKA-KQQMRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 1026
            M   SRLRPRP SW VGSARFLLS V+AIVR GLH A +A+TLP   G P    S S        A     AR  QSR     +    + G+    A  GH+R  GG R R    S  +GA+    S V V   G   PA++  +A  RKA KQ++RAMTRGLNSIT++AAYG+RE  GR    +TMAEEI+LVE +K+L+RYLK REQL+A LGGREPTREEWA+SL IST+ELA QMM S++AQE+IVEANVGLI +MARRHHPATMA+GTITSDVIQEGSLA+LRAAETF+P+LGYRFSTYAGWWVRDRVTRCVTQQ RIIRLPQYVHNFRRTAS+T++ALLKELGR
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLS-VAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGF--SSRLGAVGTAPSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGR----MTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGR 343
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.900e-115
Identity = 224/355 (63.10%), Postives = 264/355 (74.37%), Query Frame = 1 
Query:   19 MVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNA-NAYTLP-WVGHP--------RSIASDSPAARDTFARTCQSRFLPSPFL---IDGDCCCVAGSGHERSAGGSRGRRSRPSPSVGALAAVGSAVD---VSSSGG--GPAVVDEAAIGRKAK-QQMRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 1026
            M   SRLRPRP SW  GSARFLLS V+AIVR GLH A +A+TLP   GHP        R +  +  A   T AR  QSR     +    + G+    A  GH+R     RGRR R   S   L AVG+A     V   GG  GPAV+  +A  RKA  Q++RA+TRGLNSIT++AAYG+R+ AGR    +T+AEEI+LVE +K+L+RYLK REQL+A LGGREPTREEWA+SL IST+ELA QM+ S++AQE+IV ANVGLI +MARRHHPATMA+GTITSDVIQEGSLA+LRAAETF+P+LGYRFSTYAGWWVRDRVTRCVTQQ RIIRLPQYVHNFRRTAS+T++ALLKELGR
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLS-VAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLP---RGRRHRGCSSR--LGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGR----MTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGR 345
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: K9Y6K9_HALP7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=5 Tax=Cyanobacteria TaxID=1117 RepID=K9Y6K9_HALP7)

HSP 1 Score: 123 bits (308), Expect = 1.580e-27
Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = 1 
Query:  529 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 1044
            LT  +EI+L + ++ + + ++ +E+L+  LG RE T EEW    GIS +EL   M + ++A+ K++EAN+ L+  +A+++    M       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L ++LGR  T TE
Sbjct:   33 LTHEQEIILGKQVQKMMKLIEQKEELEEELG-REATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTE 199
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.150e-27
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 1 
Query:  541 EEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 1044
            EE+ L  HI++   +  A+E+L   L  R+P+R EWA+ +G+  D L L M+ SS+A+  ++ AN+ L   +A+R+      +G   SD++QEGS  L++AAE F+P  G++FSTYA WW++  + R +  Q R IRLP +VH+   +       L  ELGRT T  E
Sbjct:   75 EEVTLGRHIQLGLEWEAAKEELAVRLE-RQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKH----RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEE 237
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI001689130F (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI001689130F)

HSP 1 Score: 121 bits (303), Expect = 7.300e-27
Identity = 64/166 (38.55%), Postives = 101/166 (60.84%), Query Frame = 1 
Query:  529 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 1026
            LT  +EIV  + ++ +   L+ARE+L   L  REPTREEWA+ +G++  +L  ++ + ++A++K++EAN+ L+  +A+++    M       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L + LGR
Sbjct:   32 LTHEQEIVYGKQVQQMMPLLEAREKLMEQLD-REPTREEWAAKVGLTEADLNKRLREGNRAKQKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQSLGR 192
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI001685CB82 (RNA polymerase sigma factor, RpoD/SigA family n=5 Tax=Oscillatoriales TaxID=1150 RepID=UPI001685CB82)

HSP 1 Score: 121 bits (303), Expect = 8.510e-27
Identity = 66/172 (38.37%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:  529 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 1044
            LT  EEIVL + ++ +  +++A+E L A L  REP ++EWAS + IS  EL+  ++   +A++K++EAN+ L+  +A+++    +       D+IQEG+L L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L ++LGR+ T  E
Sbjct:   40 LTHEEEIVLGKQVQQMMAFVEAKEALSAKLN-REPNQQEWASHVEISEAELSRILLVGQRAKQKMIEANLRLVVAIAKKYQKRNLE----LLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQQLGRSATPAE 206
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: UPI0019F0A41F (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019F0A41F)

HSP 1 Score: 120 bits (302), Expect = 8.530e-27
Identity = 73/195 (37.44%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:  442 MRAMTRGLNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 1026
            M+A+T+ +++I  Y      ++ GR    L+  EEI+L + I+ L    K RE+LK  LG REPTR EWA +  IS  EL  ++    +A+ K+VEAN+ L+  +A+++    +       D+IQEG++ + R  E F+P  GYRFSTYA WW+R  +TR + ++ R IRLP ++         T   L +E GR
Sbjct:    1 MQAVTKNIDTIRVYL-----KEIGRIPL-LSKEEEILLAKDIQQLVALEKKREKLKKELG-REPTRSEWAQAAKISEKELEQKISKGERAKRKMVEANLRLVVSIAKKY----VKNNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGR 184
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A6U3P0N0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P0N0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.030e-26
Identity = 75/197 (38.07%), Postives = 109/197 (55.33%), Query Frame = 1 
Query:  499 REKAGRKKSG-----LTMAEEIVLVEHIKVLSRYLKAREQLKAGL---GGR---EPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAK--------GTITS--DVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGR 1026
            R K   K+S      LT  EE+ L   I+ L   ++ R+ L A L   GG    EP   +WA +  +S  +L   +    +A+ ++V ANVGLI  +ARRH+ A            GTI +  D++QEG+L L+ AAE F+P  G+RFSTYA WW+R R+ + +    R+IRLP +VH+  RT + T   + KE+GR
Sbjct:  144 RTKKSTKESSSRSDLLTREEEVELTSAIRTLKSVVRIRDDLGAELSIDGGATMGEPLEADWAEACSLSVAQLRRTLHFGQEARTRLVSANVGLIMNIARRHYYALKRSVHSGKGGIGTILTLQDMVQEGNLGLMEAAERFDPARGFRFSTYAAWWIRQRILQSIADYSRVIRLPVHVHSTLRTINRTRKEMEKEIGR 340
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.410e-26
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:  529 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 1044
            LT  EE++L  H+++L ++ + RE+L+  L  R PT  EWA+++G+ T +L  Q+  S +A+  ++E+N+ L+  +A+R+   T        D+ QEGSL L++A E F+P+ G+RFSTYA WW++  V R +  Q R IRLP ++H+   T       L  +LGR  T+ E
Sbjct:  187 LTAQEEVLLARHVQLLLKWEEVRERLEIELA-RPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSV--QDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEE 355
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BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Match: A0A8J7E0C1_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7E0C1_9CYAN)

HSP 1 Score: 120 bits (300), Expect = 1.760e-26
Identity = 67/172 (38.95%), Postives = 100/172 (58.14%), Query Frame = 1 
Query:  529 LTMAEEIVLVEHIKVLSRYLKAREQLKAGLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMARRHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDRVTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTE 1044
            LT  +EI+  + ++ L   L+ + +L+  +G REPTR EWA SL +S  EL   + D  +A+ K++EAN+ L+  +A+++    M       D+IQEGSL L R  E F+P  GY+FSTYA WW+R  +TR + QQ R IRLP ++             L + LGR+ T +E
Sbjct:   28 LTHEQEIIYGKKVQKLMSLLETKNKLQEEMG-REPTRVEWADSLDMSEVELKQVLRDGEKAKRKMIEANLRLVVAIAKKYQKRNME----FLDLIQEGSLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRQLSQSLGRSATPSE 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig707.15876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNQ9_9PHAE1.330e-11864.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLA7_ECTSI2.900e-11563.10RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
K9Y6K9_HALP71.580e-2738.37RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A835ZES3_9STRA5.150e-2739.29RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI001689130F7.300e-2738.55RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI001685CB828.510e-2738.37RNA polymerase sigma factor, RpoD/SigA family n=5 ... [more]
UPI0019F0A41F8.530e-2737.44RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A6U3P0N0_9STRA1.030e-2638.07Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1B782_9STRA1.410e-2637.79Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A8J7E0C1_9CYAN1.760e-2638.95RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig707contigL-elsbetiae_contig707:26567..32049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.0
Seed ortholog evalue7.8e-98
Seed eggNOG ortholog2880.D8LLA7
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Ec32 orthologEc-27_001910.1
Exons5
Model size1625
Cds size1047
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.8369262-UTR-L-elsbetiae_contig707:26566..265781622816784.8369262-UTR-L-elsbetiae_contig707:26566..26578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig707 26567..26578 +
1691683811.2272239-UTR-L-elsbetiae_contig707:26566..265781691683811.2272239-UTR-L-elsbetiae_contig707:26566..26578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig707 26567..26578 +
1622816784.9036384-UTR-L-elsbetiae_contig707:31483..320491622816784.9036384-UTR-L-elsbetiae_contig707:31483..32049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig707 31484..32049 +
1691683811.2943377-UTR-L-elsbetiae_contig707:31483..320491691683811.2943377-UTR-L-elsbetiae_contig707:31483..32049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig707 31484..32049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.8499267-CDS-L-elsbetiae_contig707:26578..266571622816784.8499267-CDS-L-elsbetiae_contig707:26578..26657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 26579..26657 +
1691683811.2406259-CDS-L-elsbetiae_contig707:26578..266571691683811.2406259-CDS-L-elsbetiae_contig707:26578..26657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 26579..26657 +
1622816784.86024-CDS-L-elsbetiae_contig707:27012..274151622816784.86024-CDS-L-elsbetiae_contig707:27012..27415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 27013..27415 +
1691683811.2508676-CDS-L-elsbetiae_contig707:27012..274151691683811.2508676-CDS-L-elsbetiae_contig707:27012..27415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 27013..27415 +
1622816784.8708148-CDS-L-elsbetiae_contig707:29458..296781622816784.8708148-CDS-L-elsbetiae_contig707:29458..29678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 29459..29678 +
1691683811.267377-CDS-L-elsbetiae_contig707:29458..296781691683811.267377-CDS-L-elsbetiae_contig707:29458..29678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 29459..29678 +
1622816784.8819585-CDS-L-elsbetiae_contig707:30213..304631622816784.8819585-CDS-L-elsbetiae_contig707:30213..30463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 30214..30463 +
1691683811.275042-CDS-L-elsbetiae_contig707:30213..304631691683811.275042-CDS-L-elsbetiae_contig707:30213..30463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 30214..30463 +
1622816784.8925593-CDS-L-elsbetiae_contig707:31388..314831622816784.8925593-CDS-L-elsbetiae_contig707:31388..31483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 31389..31483 +
1691683811.2839055-CDS-L-elsbetiae_contig707:31388..314831691683811.2839055-CDS-L-elsbetiae_contig707:31388..31483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig707 31389..31483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig707.15876.1prot_L-elsbetiae_contig707.15876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig707 26579..31483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig707.15876.1

>prot_L-elsbetiae_contig707.15876.1 ID=prot_L-elsbetiae_contig707.15876.1|Name=mRNA_L-elsbetiae_contig707.15876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=349bp
MAMVHSSRLRPRPLSWRVGSARFLLSAVSAIVRGGLHNANAYTLPWVGHP
RSIASDSPAARDTFARTCQSRFLPSPFLIDGDCCCVAGSGHERSAGGSRG
RRSRPSPSVGALAAVGSAVDVSSSGGGPAVVDEAAIGRKAKQQMRAMTRG
LNSITAYAAYGAREKAGRKKSGLTMAEEIVLVEHIKVLSRYLKAREQLKA
GLGGREPTREEWASSLGISTDELALQMMDSSQAQEKIVEANVGLIKMMAR
RHHPATMAKGTITSDVIQEGSLALLRAAETFNPQLGYRFSTYAGWWVRDR
VTRCVTQQGRIIRLPQYVHNFRRTASVTDSALLKELGRTWTSTESPAC*
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mRNA from alignment at L-elsbetiae_contig707:26567..32049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig707.15876.1 ID=mRNA_L-elsbetiae_contig707.15876.1|Name=mRNA_L-elsbetiae_contig707.15876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5483bp|location=Sequence derived from alignment at L-elsbetiae_contig707:26567..32049+ (Laminarionema elsbetiae ELsaHSoW15)
TTAACACATTCGATGGCCATGGTACATTCTTCTCGACTTCGGCCGAGACC
ACTATCATGGCGCGTCGGGAGTGCGCGGTTTTTGCTCTCAGGTAAGGGAC
GGAGAGAGAGGGAAAGTTTTTTTTTTGGCATCCACGCGGACGCATGGTCT
CCTCTTCTATTCTCTCCTCCCAATTTGCACCTTGCACGAGTCCTGTTCAT
GTCTGAAAGCTCGAGACAGGGTTGTGGAGGAGGCGATTGCTTGCACTACG
AACTTCCGTTCTATTCCAGGACAGGGTCTCTTAGTGGTAGATGCGTGCCT
GGTGGTTTGGCGGTTTTTGGTTGTGCCTCGGGAAAAGCACCTCGAGGGTT
CATGTTGCCTTTCTTTTTTGCTTTTTTGTTGCCTCCAAAAGCCGGTGTTT
TTCTCGCTCTGTTGTCTGCCCCTCTGCCCCTCGACCGTGTGAACAGCAGT
TTCAGCTATCGTGCGGGGTGGACTTCACAATGCGAACGCCTACACCCTGC
CTTGGGTGGGCCACCCTCGCAGCATCGCGTCTGATAGTCCGGCAGCAAGG
GATACTTTCGCGAGGACGTGCCAGTCAAGATTTCTCCCCTCCCCCTTTCT
TATAGACGGTGACTGCTGCTGTGTTGCGGGTTCTGGGCACGAGCGATCAG
CTGGCGGGAGCCGTGGGCGACGGAGCCGCCCCTCGCCCTCGGTCGGTGCT
CTTGCTGCGGTGGGGAGTGCTGTTGATGTTAGTAGTAGTGGTGGTGGCCC
TGCTGTTGTGGATGAAGCAGCAATCGGGAGGAAGGCGAAGCAGCAGATGC
GAGCGATGACCCGAGGTCTCAACAGCATAACGGCGTACGCTGCCTACGGG
TGAGAGAGAGAGACACACACAGAGAGAGGAAGAGCACAAGCGCTAGAAGA
GTGGATGCAGGATGCTTGCCTGATACACGGTTACTACTACTATGCATTTA
TGTATCGTATATGGCCCAGTTTCTGTATAATCCGAAATGGTCACTATTCC
TCGGCGGTGCCGCTTTCCGCCTTCGGCGGCTTGTCCCCACATCCACGAAG
CACATTAGAGCATGATCTATCGCCGGTTGTGTTCTTCTCGATTTCATAAA
TACTCGCTTATGTGTAGGTGTTCGTGGGTATTCAGTTTCCACGCAGCAGT
AACAGAGAAGCTACCGCGGGTGGGATGTTTGCTGCTCCAACATAACAATG
TAGGCGGCGGGAATTAAATGGCGGGCGGGCGGGGGGTGGGGGGGGCGTAT
CGGAGACTGGTCAGGCGATGTGTAACCTCGCACATACGCACACAATCACG
TTATTTGTTTGCAGCGTGTTCGCCACGGGAGTGGGCCCGTTTCCCATGTG
CGGTGAGGTTGTGAAAGTACGCTGGCGACCCCGCATACGGCAGGAGGCAG
GAGGAGAGTGAAAGTGCGGCCCGACTAAAATAAATACCCCGCCTCTGTAA
ATGAAGGAGCATCGACGTTTACACTCCTGTAGAATACAAATACAGCATGA
GTACAAAACAATGGGTATGTAGATTAAGCAACCCGCTTGTTGTGTGGCCC
AGGGCCCCGCGTATCGGCGAAATCTGGCATTTTCCTATGTGAAAATACCC
TTCAAATTCAGTCAATATTATACTGGAGTATGGTTTAATACTGTTTTCAA
GCGGTTTGAAGTTTGAGGTAGTTTCGCACACGAGAGAGCATTGCAATCGA
GAAGAATAAGTGAAACAAAGCACGCGATATTGTGAGTAAAATGGGCGAAA
CGTTCTCCAGATGCTGAACAGAAAATACCTCCCCAAAAACAAACGCCTTC
GGCGAACAAGGAGGCCTTTTTTTGTTCTCGCCTGCGGCGCAATTGTTTTG
TTCCTGCGGCAAGCCGCGGATACGCCCCGCAAGAACCTGCGCTGCGCGCA
AATTGAAAATTTCCGATAATATCTGCGCCAGCCCACGGCCGCATGCCATT
TTTTTTTTAACCCTTGGTGTGGCCCCCACCCCCCGCTCCCTTCATGCATG
AAGTCCTTCCAATATGTATCTTGTTTTACCACGTTTGTGGTCTTGTCGTG
CCTGCCAGTGCCGTGCGTCACGCGCACCCCCGCGCCTCCAGGCTCAAATT
CGGCGTTACATACAATAGCCTTCCGATAGAAATCAGGAGCCACGGGACTC
TTGTGCAGGTGTGGTATTTATGTATCATGTTCCTACAGAGTGCCGAGAAG
AACGTAAACTTGGCCCGGCCGAGTAGGAAAACACCTACGGTATGTACGTA
CTCGGAGTATGTACATACAATATTAATATTTGAAGACTTCAATGCCTCCC
TGCACGACTCTAGGTTTTAGTGCATACCCACAGGTATCTTGGCCGACTTG
AGCACCTAGCGCCCCGATACATCAGTAGAACGTTTGCCCGGCGGGTGGTA
AGACTGCCGTGGTATCCGTGGCCGGCCGGCAAGAACAAGCCCCCTTAAAA
AAAGTGTTGACCAGAGATTTCCAGACCGCAGACTAACCCCAAGACACACA
CGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTCTCGCCGCTT
GCGGTGTCTGACGGTGGCGACGTTCGTTTTGCTGGCGTTAGCGATGGGTG
TGGCGTCCGCTGTGACACTCGGAGAGCAGGTGGCCCCGGGAAGAGATCGG
CCAGCTCTCGGGCATGACGCTAGTGCTGTCTTCGCCTGTCTCGTTCTCTC
TCTCTCTCTCTCTCTCTCTCTTTAAGCATTTTCAACTGGGGCGAGAGTAG
TTTTGTCGACGCAGAACCATCAGAGCCGCACCCCTAAATTTCGCGGGTAA
CATTACGCACACTTCGTATCTACAAAAGAGTAAATATTTAAGGCAAAATT
ATAAGCGATTCGCCCCCTTTCACACGCGCAATAATGCCACAGGGCGCGAG
AAAAAGCGGGTCGGAAGAAGAGCGGCCTGACGATGGCGGAAGAGATCGTG
CTCGTGGAGCACATCAAGGTCCTCTCGCGGTACCTCAAGGCCCGTGAGCA
GCTGAAGGCCGGGCTCGGAGGCCGTGAGCCGACCCGCGAGGAGTGGGCGT
CGAGCCTCGGCATCTCCACGGACGAGCTGGCCCTCCAGATGATGGACTCT
TCGCAAGCGCAGGTGTGTGTGTGTTTGTGTGTGTGTGTGTATGTGTGTAT
GTGTGTGTGTGTGTATAAATATGTTTTTCTCTTCCATTATTGGCTTATTC
GTCGTCTGCCCCACCGGCCCCCTTCCTCCACTACGACAATTCAGCTAGAC
GACCCAACCGGGGTCAGCGAAAGTTCGTCAGTCGTGATCAATAAAGTACT
ACTGCTGTTGTGGACAAATAAATTAGCATCGCCCCAAGCAGGGAAGGGGA
AGGGACGAGTGGAAGCCCCCATGTCCTCTGGCCATTAACACCAAACGCTT
GTGCATGGGGTCGGGGTCCGATGTTAAAACCCTCGAAGAAACGGAAGCGC
AACAAAAAAAATGGAAACGGTACGTAGATACATACCACACCCGGAAGCCA
CCCCACCAAAAAAGCCCTGGCTCCTTCGCTCCTAAATTACTCGCGTACAT
CTCATCTGCACGTTCATAATAACATATGATGGGATGCACCTGACAACCCG
AAACTCACGGCACGGCACGGGACGGGACGGGACGGGACGGCACGCAGGAG
AAAATAGTGGAGGCGAACGTCGGGCTGATCAAGATGATGGCCCGGAGGCA
CCACCCGGCCACCATGGCCAAGGGCACCATCACGAGCGACGTGATCCAGG
AGGGGAGTCTGGCCCTGCTCCGGGCGGCCGAGACGTTCAACCCGCAGCTG
GGCTACCGGTTCTCGACGTACGCCGGGTGGTGGGTGAGGGACAGGGTGAC
GCGGTGCGTGACCCAGCAGGGTCGGATCATTCGGCTCCCGCAGTACGGTG
AGATGGAGAGAGTGTTGCTTTTGATTATCATTTTGTGTTGTGTCTATTTT
TTTGCTTGTCACTCTTTGTCTTGCCGGGTCCGGCTGTCATGGTACACATA
GCCGAAAGGTTGGGGTTGGGAGGGGGGGGGGGGGGGGGGGGCGGCCGCAA
GGCTTTGATAGGTGCAGAAGAGAGAGGGATCGCCGGAATTTTGAGGTCGA
TTTTGCCGTGAGCTTTTTCGCGTGGTGACGGACATAGCAAGGGGCGAGAG
ACTGTTCTGCGGGCCGGCCCGCCTTCTAAACCACACTCGTGGAAGCGCGC
GAGTTTGCTATGGGGCGCTCGTCTTCTCTAGTACCTACCCACGCGGCGTG
TTGCACTGATTGCACTGGTCTTGTGAGAGAGGTGGTTGCAGACGATGGCG
GTTATCCCGCCTTGCAATGCTGCTGTACCGCATATGTATGTACGTCGTCT
TCAGTTTCAATGAGAACCAAAAGTACGAGGTTTAGTGATGCAGTCTTGCA
AGTCTGCGCTTGACTGTCTTATGTATGTAGTCGCAGCGCGAGAGATGTAA
CTGCTGTTTGATGCCACGTAAAATTGCTGAACGCGCTTTTTTTTTTTCAT
TACCGATACTCACACGTTTTACCAGCTTTTCACATCGTACCCGCCGTGGC
GAATCGTTGGACTAACTTGCCCTGGCTCTTCGCGCCGCCTTTTGCCCTCC
TGCCTGCTGCCCCGCGTCTTTCCCCAACCTCCCTTGTTCCCTTCTCCCCT
TCTCCCCTCCTGCGTTTCTCCCTCTGGTTTCTCGCTTTCTCGCTACATAC
TTCACAATCGGGGTTGTGCAATGGCTTTCTTTTCCTGCGAACGCGACAAA
AAAAAAACGGACCGAAACGAAACCACGAACGGACCAAAACACAACATCGT
GGATAAAATAAAAAATAAAAAGTGCACAATTTCCGACGAACGGCGTCCGT
CACGGATTCGGCTCTGCTGAAGGAGCTGGGCCGCACGTGGACGTCAACCG
AGTCACCCGCCTGCTGAACTGTCCGGACGCCTCCTCTCTCGACGTCGGGC
CGCTCCTGTCCTCTCCGATGGCCGGCAGCGGCATCGGCGGCGGCGGCTCG
AGCGCCGAGGGCGGGGGGGGGCGCCGGGGTGGGGGCGGAGAGGGGGCGAA
GGGAGGGGGACGGGCGAAGCCCCCGGCGGGGGTGGGGTACCGGCACGAGA
AGGTGGCGTGCTCGATGGTGAACCCCAAGCAGCAGGCGGAGGCGGACCTG
TTCGAGAGCAAGCTCGACAGGCTGATGAGCGTGCTGAGCGAGGACGAGAG
GCTGGTGGTGAAGCTGCGGTACGGGCTGGGGGGCTCGTCGCCGACAACCC
TAAATGAGGTCGCCCAGAGGGCCGGCTCTACCACGCACAGGGTGAGGATG
GTGGAGACGCGCGCGCTCAACAAGCTGCGCCGCCGACCGGGGAGGCACAG
GCACCTCGTGGCGCGAGGCCGGGGCCGTGCTGCCGCCGCCGCCGGTGGCG
GTCTCGGTGCCCGGAGAGCAGGAACGGCGGCGCGACGAGTGGGCGGTGTG
CTGGCGAGGGACTTCGGTTGAGCTGGCGAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig707:26567..32049+

>mRNA_L-elsbetiae_contig707.15876.1 ID=mRNA_L-elsbetiae_contig707.15876.1|Name=mRNA_L-elsbetiae_contig707.15876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig707:26567..32049+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATGGTACATTCTTCTCGACTTCGGCCGAGACCACTATCATGGCG
CGTCGGGAGTGCGCGGTTTTTGCTCTCAGATGGCCATGGTACATTCTTCT
CGACTTCGGCCGAGACCACTATCATGGCGCGTCGGGAGTGCGCGGTTTTT
GCTCTCAGCAGTTTCAGCTATCGTGCGGGGTGGACTTCACAATGCGAACG
CCTACACCCTGCCTTGGGTGGGCCACCCTCGCAGCATCGCGTCTGATAGT
CCGGCAGCAAGGGATACTTTCGCGAGGACGTGCCAGTCAAGATTTCTCCC
CTCCCCCTTTCTTATAGACGGTGACTGCTGCTGTGTTGCGGGTTCTGGGC
ACGAGCGATCAGCTGGCGGGAGCCGTGGGCGACGGAGCCGCCCCTCGCCC
TCGGTCGGTGCTCTTGCTGCGGTGGGGAGTGCTGTTGATGTTAGTAGTAG
TGGTGGTGGCCCTGCTGTTGTGGATGAAGCAGCAATCGGGAGGAAGGCGA
AGCAGCAGATGCGAGCGATGACCCGAGGTCTCAACAGCATAACGGCGTAC
GCTGCCTACGGCAGTTTCAGCTATCGTGCGGGGTGGACTTCACAATGCGA
ACGCCTACACCCTGCCTTGGGTGGGCCACCCTCGCAGCATCGCGTCTGAT
AGTCCGGCAGCAAGGGATACTTTCGCGAGGACGTGCCAGTCAAGATTTCT
CCCCTCCCCCTTTCTTATAGACGGTGACTGCTGCTGTGTTGCGGGTTCTG
GGCACGAGCGATCAGCTGGCGGGAGCCGTGGGCGACGGAGCCGCCCCTCG
CCCTCGGTCGGTGCTCTTGCTGCGGTGGGGAGTGCTGTTGATGTTAGTAG
TAGTGGTGGTGGCCCTGCTGTTGTGGATGAAGCAGCAATCGGGAGGAAGG
CGAAGCAGCAGATGCGAGCGATGACCCGAGGTCTCAACAGCATAACGGCG
TACGCTGCCTACGGGGCGCGAGAAAAAGCGGGTCGGAAGAAGAGCGGCCT
GACGATGGCGGAAGAGATCGTGCTCGTGGAGCACATCAAGGTCCTCTCGC
GGTACCTCAAGGCCCGTGAGCAGCTGAAGGCCGGGCTCGGAGGCCGTGAG
CCGACCCGCGAGGAGTGGGCGTCGAGCCTCGGCATCTCCACGGACGAGCT
GGCCCTCCAGATGATGGACTCTTCGCAAGCGCAGGGCGCGAGAAAAAGCG
GGTCGGAAGAAGAGCGGCCTGACGATGGCGGAAGAGATCGTGCTCGTGGA
GCACATCAAGGTCCTCTCGCGGTACCTCAAGGCCCGTGAGCAGCTGAAGG
CCGGGCTCGGAGGCCGTGAGCCGACCCGCGAGGAGTGGGCGTCGAGCCTC
GGCATCTCCACGGACGAGCTGGCCCTCCAGATGATGGACTCTTCGCAAGC
GCAGGAGAAAATAGTGGAGGCGAACGTCGGGCTGATCAAGATGATGGCCC
GGAGGCACCACCCGGCCACCATGGCCAAGGGCACCATCACGAGCGACGTG
ATCCAGGAGGGGAGTCTGGCCCTGCTCCGGGCGGCCGAGACGTTCAACCC
GCAGCTGGGCTACCGGTTCTCGACGTACGCCGGGTGGTGGGTGAGGGACA
GGGTGACGCGGTGCGTGACCCAGCAGGGTCGGATCATTCGGCTCCCGCAG
TACGGAGAAAATAGTGGAGGCGAACGTCGGGCTGATCAAGATGATGGCCC
GGAGGCACCACCCGGCCACCATGGCCAAGGGCACCATCACGAGCGACGTG
ATCCAGGAGGGGAGTCTGGCCCTGCTCCGGGCGGCCGAGACGTTCAACCC
GCAGCTGGGCTACCGGTTCTCGACGTACGCCGGGTGGTGGGTGAGGGACA
GGGTGACGCGGTGCGTGACCCAGCAGGGTCGGATCATTCGGCTCCCGCAG
TACGTGCACAATTTCCGACGAACGGCGTCCGTCACGGATTCGGCTCTGCT
GAAGGAGCTGGGCCGCACGTGGACGTCAACCGAGTCACCCGCCTGCTGAT
GCACAATTTCCGACGAACGGCGTCCGTCACGGATTCGGCTCTGCTGAAGG
AGCTGGGCCGCACGTGGACGTCAACCGAGTCACCCGCCTGCTGA
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